RNA–Protein interactions for RNA: ENST00000492118.2

ATF3-209, Transcript of activating transcription factor 3, humanhuman

TSL 2

Gene ATF3, Length 2,103 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATF3-209ENST00000492118 NISCHQ9Y2I1 1504 aa24.83■■□□□ 1.56
ATF3-209ENST00000492118 CCDC180Q9P1Z9 1646 aa21.69■■□□□ 1.06
ATF3-209ENST00000492118 ABCC9O60706 1549 aa21.08■□□□□ 0.97
ATF3-209ENST00000492118 DCAF8L2P0C7V8 631 aa20.97■□□□□ 0.95
ATF3-209ENST00000492118 ZCCHC6Q5VYS8 1495 aaKnown RBP20.76■□□□□ 0.91
ATF3-209ENST00000492118 DCAF1Q9Y4B6 1507 aa20.37■□□□□ 0.85
ATF3-209ENST00000492118 SHROOM4Q9ULL8 1493 aa20.34■□□□□ 0.85
ATF3-209ENST00000492118 NACADO15069 1562 aa20.31■□□□□ 0.84
ATF3-209ENST00000492118 RB1CC1Q8TDY2 1594 aa20.27■□□□□ 0.84
ATF3-209ENST00000492118 MYO15BQ96JP2 1530 aa20.22■□□□□ 0.83
ATF3-209ENST00000492118 SCRIBQ14160 1630 aa20.13■□□□□ 0.81
ATF3-209ENST00000492118 PABPN1Q86U42 306 aaKnown RBP eCLIP19.9■□□□□ 0.78
ATF3-209ENST00000492118 UNC13AQ9UPW8 1703 aa19.9■□□□□ 0.78
ATF3-209ENST00000492118 BICRAQ9NZM4 1560 aa19.69■□□□□ 0.74
ATF3-209ENST00000492118 CECR2Q9BXF3 1484 aa19.43■□□□□ 0.7
ATF3-209ENST00000492118 SUPT5HO00267 1087 aaKnown RBP19.4■□□□□ 0.7
ATF3-209ENST00000492118 MROH2BQ7Z745 1585 aa19.24■□□□□ 0.67
ATF3-209ENST00000492118 RSF1Q96T23 1441 aaPredicted RBP19.18■□□□□ 0.66
ATF3-209ENST00000492118 BAZ1AQ9NRL2 1556 aaPredicted RBP19.18■□□□□ 0.66
ATF3-209ENST00000492118 SMARCA4P51532 1647 aa19.16■□□□□ 0.66
ATF3-209ENST00000492118 EIF4G1Q04637 1599 aaKnown RBP19.14■□□□□ 0.65
ATF3-209ENST00000492118 WIZO95785 1651 aa19.09■□□□□ 0.65
ATF3-209ENST00000492118 CC2D2AQ9P2K1 1620 aa18.98■□□□□ 0.63
ATF3-209ENST00000492118 DNAJC5BQ9UF47 199 aa18.95■□□□□ 0.62
ATF3-209ENST00000492118 ATAD2BQ9ULI0 1458 aa18.94■□□□□ 0.62
ATF3-209ENST00000492118 SMARCA2P51531 1590 aa18.87■□□□□ 0.61
ATF3-209ENST00000492118 BAZ1BQ9UIG0 1483 aaKnown RBP18.85■□□□□ 0.61
ATF3-209ENST00000492118 PEG3Q9GZU2 1588 aa18.83■□□□□ 0.6
ATF3-209ENST00000492118 TOP2AP11388 1531 aaKnown RBP18.78■□□□□ 0.6
ATF3-209ENST00000492118 NCAPD3P42695 1498 aa18.77■□□□□ 0.6
ATF3-209ENST00000492118 HMGXB3Q12766 1538 aa18.69■□□□□ 0.58
ATF3-209ENST00000492118 CCDC88BA6NC98 1476 aa18.66■□□□□ 0.58
ATF3-209ENST00000492118 NESP48681 1621 aa18.4■□□□□ 0.54
ATF3-209ENST00000492118 CADPSQ9ULU8 1353 aa18.34■□□□□ 0.53
ATF3-209ENST00000492118 SLC24A1O60721 1099 aa18.33■□□□□ 0.52
ATF3-209ENST00000492118 CFTRP13569 1480 aa18.29■□□□□ 0.52
ATF3-209ENST00000492118 CHIC1Q5VXU3 224 aa18.25■□□□□ 0.51
ATF3-209ENST00000492118 ABCC8Q09428 1581 aa18.24■□□□□ 0.51
ATF3-209ENST00000492118 LAMC3Q9Y6N6 1575 aa18.19■□□□□ 0.5
ATF3-209ENST00000492118 FANCD2Q9BXW9 1451 aa18.16■□□□□ 0.5
ATF3-209ENST00000492118 TRIM41Q8WV44 630 aa18.16■□□□□ 0.5
ATF3-209ENST00000492118 PRDM2Q13029 1718 aa18.13■□□□□ 0.49
ATF3-209ENST00000492118 PDS5BQ9NTI5 1447 aa18.11■□□□□ 0.49
ATF3-209ENST00000492118 KIF21AQ7Z4S6 1674 aa18.11■□□□□ 0.49
ATF3-209ENST00000492118 ERCC6Q03468 1493 aa18.09■□□□□ 0.49
ATF3-209ENST00000492118 WRNQ14191 1432 aaPredicted RBP eCLIP18.08■□□□□ 0.48
ATF3-209ENST00000492118 CEP164Q9UPV0 1460 aa18.07■□□□□ 0.48
ATF3-209ENST00000492118 SYNJ1O43426 1573 aa18.02■□□□□ 0.48
ATF3-209ENST00000492118 CUX1P39880 1505 aa17.99■□□□□ 0.47
ATF3-209ENST00000492118 FAM9AQ8IZU1 332 aaPredicted RBP17.98■□□□□ 0.47
ATF3-209ENST00000492118 URB2Q14146 1524 aaKnown RBP17.95■□□□□ 0.46
ATF3-209ENST00000492118 TOPBP1Q92547 1522 aa17.91■□□□□ 0.46
ATF3-209ENST00000492118 TOP2BQ02880 1626 aa17.9■□□□□ 0.46
ATF3-209ENST00000492118 MRC2Q9UBG0 1479 aa17.9■□□□□ 0.46
ATF3-209ENST00000492118 EHMT2Q96KQ7 1210 aa17.88■□□□□ 0.45
ATF3-209ENST00000492118 DNMBPQ6XZF7 1577 aa17.87■□□□□ 0.45
ATF3-209ENST00000492118 FGD5Q6ZNL6 1462 aa17.87■□□□□ 0.45
ATF3-209ENST00000492118 BIVM-ERCC5R4GMW8 1640 aa17.86■□□□□ 0.45
ATF3-209ENST00000492118 RAD54L2Q9Y4B4 1467 aa17.83■□□□□ 0.45
ATF3-209ENST00000492118 SOGA1O94964 1423 aa17.82■□□□□ 0.44
ATF3-209ENST00000492118 THOC2Q8NI27 1593 aaKnown RBP17.82■□□□□ 0.44
ATF3-209ENST00000492118 POLA1P09884 1462 aaPredicted RBP17.81■□□□□ 0.44
ATF3-209ENST00000492118 RUSC2Q8N2Y8 1516 aa17.79■□□□□ 0.44
ATF3-209ENST00000492118 WDR62O43379 1518 aa17.78■□□□□ 0.44
ATF3-209ENST00000492118 CUX2O14529 1486 aa17.72■□□□□ 0.43
ATF3-209ENST00000492118 TDRD9Q8NDG6 1382 aaKnown RBP17.71■□□□□ 0.43
ATF3-209ENST00000492118 LOC105371045A0A1W2PR82 267 aa17.68■□□□□ 0.42
ATF3-209ENST00000492118 ZNF608Q9ULD9 1512 aaPredicted RBP17.65■□□□□ 0.42
ATF3-209ENST00000492118 AQRO60306 1485 aaKnown RBP eCLIP17.64■□□□□ 0.428e-7■□□□□ 9.1
ATF3-209ENST00000492118 TARBP1Q13395 1621 aaKnown RBP17.64■□□□□ 0.41
ATF3-209ENST00000492118 KIF27Q86VH2 1401 aa17.63■□□□□ 0.41
ATF3-209ENST00000492118 CSRNP3Q8WYN3 585 aa17.62■□□□□ 0.41
ATF3-209ENST00000492118 ABCA10Q8WWZ4 1543 aa17.62■□□□□ 0.41
ATF3-209ENST00000492118 IFT140Q96RY7 1462 aa17.61■□□□□ 0.41
ATF3-209ENST00000492118 WDR97A6NE52 1622 aa17.56■□□□□ 0.4
ATF3-209ENST00000492118 GAPVD1Q14C86 1478 aa17.56■□□□□ 0.4
ATF3-209ENST00000492118 IGF1RP08069 1367 aa17.53■□□□□ 0.4
ATF3-209ENST00000492118 EEA1Q15075 1411 aa17.52■□□□□ 0.39
ATF3-209ENST00000492118 EIF4G3O43432 1585 aaKnown RBP17.51■□□□□ 0.39
ATF3-209ENST00000492118 ABCA5Q8WWZ7 1642 aa17.5■□□□□ 0.39
ATF3-209ENST00000492118 MYT1Q01538 1121 aa17.5■□□□□ 0.39
ATF3-209ENST00000492118 UBTFP17480 764 aaKnown RBP17.49■□□□□ 0.39
ATF3-209ENST00000492118 RANGAP1P46060 587 aaPredicted RBP17.49■□□□□ 0.39
ATF3-209ENST00000492118 FBLN2P98095 1184 aa17.48■□□□□ 0.39
ATF3-209ENST00000492118 PBRM1Q86U86 1689 aa17.45■□□□□ 0.38
ATF3-209ENST00000492118 CARMIL1Q5VZK9 1371 aa17.45■□□□□ 0.38
ATF3-209ENST00000492118 RAPGEF2Q9Y4G8 1499 aa17.45■□□□□ 0.38
ATF3-209ENST00000492118 GRIN2BQ13224 1484 aa17.43■□□□□ 0.38
ATF3-209ENST00000492118 SNAPC4Q5SXM2 1469 aa17.42■□□□□ 0.38
ATF3-209ENST00000492118 ERICH3Q5RHP9 1530 aa17.39■□□□□ 0.37
ATF3-209ENST00000492118 PRXQ9BXM0 1461 aa17.38■□□□□ 0.37
ATF3-209ENST00000492118 CHMP7Q8WUX9 453 aaPredicted RBP17.37■□□□□ 0.37
ATF3-209ENST00000492118 GOLGA3Q08378 1498 aa17.36■□□□□ 0.37
ATF3-209ENST00000492118 KIF21BO75037 1637 aa17.34■□□□□ 0.37
ATF3-209ENST00000492118 CUL7Q14999 1698 aa17.33■□□□□ 0.37
ATF3-209ENST00000492118 TTBK1Q5TCY1 1321 aaPredicted RBP17.32■□□□□ 0.36
ATF3-209ENST00000492118 ADAMTS12P58397 1594 aa17.32■□□□□ 0.36
ATF3-209ENST00000492118 FHAD1B1AJZ9 1412 aa17.31■□□□□ 0.36
ATF3-209ENST00000492118 MAGI1Q96QZ7 1491 aaPredicted RBP17.29■□□□□ 0.36
ATF3-209ENST00000492118 SYNJ2O15056 1496 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms