RNA–Protein interactions for RNA: ENST00000492021.6

PDPK1-213, Transcript of 3-phosphoinositide dependent protein kinase 1, human

TSL 5

Gene PDPK1, Length 552 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDPK1-213	ENST00000492021	NISCH	Q9Y2I1	1504 aa		46.44	■■■■■ 5.03
PDPK1-213	ENST00000492021	CCDC180	Q9P1Z9	1646 aa		41.18	■■■■■ 4.18
PDPK1-213	ENST00000492021	ABCC9	O60706	1549 aa		39.81	■■■■□ 3.96
PDPK1-213	ENST00000492021	ZCCHC6	Q5VYS8	1495 aa	Known RBP	38.79	■■■■□ 3.8
PDPK1-213	ENST00000492021	NACAD	O15069	1562 aa		38.6	■■■■□ 3.77
PDPK1-213	ENST00000492021	MYO15B	Q96JP2	1530 aa		38.54	■■■■□ 3.76
PDPK1-213	ENST00000492021	RB1CC1	Q8TDY2	1594 aa		38.53	■■■■□ 3.76
PDPK1-213	ENST00000492021	DCAF1	Q9Y4B6	1507 aa		38.51	■■■■□ 3.76
PDPK1-213	ENST00000492021	DCAF8L2	P0C7V8	631 aa		38.47	■■■■□ 3.75
PDPK1-213	ENST00000492021	UNC13A	Q9UPW8	1703 aa		37.64	■■■■□ 3.62
PDPK1-213	ENST00000492021	SCRIB	Q14160	1630 aa		37.52	■■■■□ 3.6
PDPK1-213	ENST00000492021	BICRA	Q9NZM4	1560 aa		37.35	■■■■□ 3.57
PDPK1-213	ENST00000492021	PABPN1	Q86U42	306 aa	Known RBP eCLIP	37.21	■■■■□ 3.55
PDPK1-213	ENST00000492021	SHROOM4	Q9ULL8	1493 aa		37.08	■■■■□ 3.53
PDPK1-213	ENST00000492021	EIF4G1	Q04637	1599 aa	Known RBP	36.32	■■■■□ 3.41
PDPK1-213	ENST00000492021	DNAJC5B	Q9UF47	199 aa		36.14	■■■■□ 3.38
PDPK1-213	ENST00000492021	CECR2	Q9BXF3	1484 aa		36.1	■■■■□ 3.37
PDPK1-213	ENST00000492021	CC2D2A	Q9P2K1	1620 aa		36.07	■■■■□ 3.36
PDPK1-213	ENST00000492021	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.99	■■■■□ 3.35
PDPK1-213	ENST00000492021	SMARCA4	P51532	1647 aa		35.97	■■■■□ 3.35
PDPK1-213	ENST00000492021	MROH2B	Q7Z745	1585 aa		35.77	■■■■□ 3.32
PDPK1-213	ENST00000492021	SMARCA2	P51531	1590 aa		35.66	■■■■□ 3.3
PDPK1-213	ENST00000492021	ATAD2B	Q9ULI0	1458 aa		35.66	■■■■□ 3.3
PDPK1-213	ENST00000492021	PEG3	Q9GZU2	1588 aa		35.65	■■■■□ 3.3
PDPK1-213	ENST00000492021	NCAPD3	P42695	1498 aa		35.6	■■■■□ 3.29
PDPK1-213	ENST00000492021	RSF1	Q96T23	1441 aa	Predicted RBP	35.5	■■■■□ 3.27
PDPK1-213	ENST00000492021	HMGXB3	Q12766	1538 aa		35.49	■■■■□ 3.27
PDPK1-213	ENST00000492021	WIZ	O95785	1651 aa		35.4	■■■■□ 3.26
PDPK1-213	ENST00000492021	BAZ1B	Q9UIG0	1483 aa	Known RBP	35.38	■■■■□ 3.25
PDPK1-213	ENST00000492021	TOP2A	P11388	1531 aa	Known RBP	35.1	■■■■□ 3.21
PDPK1-213	ENST00000492021	SUPT5H	O00267	1087 aa	Known RBP	34.78	■■■■□ 3.16
PDPK1-213	ENST00000492021	CCDC88B	A6NC98	1476 aa		34.64	■■■■□ 3.14
PDPK1-213	ENST00000492021	LAMC3	Q9Y6N6	1575 aa		34.61	■■■■□ 3.13
PDPK1-213	ENST00000492021	NES	P48681	1621 aa		34.56	■■■■□ 3.12
PDPK1-213	ENST00000492021	CADPS	Q9ULU8	1353 aa		34.55	■■■■□ 3.12
PDPK1-213	ENST00000492021	CFTR	P13569	1480 aa		34.46	■■■■□ 3.11
PDPK1-213	ENST00000492021	PDS5B	Q9NTI5	1447 aa		34.33	■■■■□ 3.09
PDPK1-213	ENST00000492021	ERCC6	Q03468	1493 aa		34.3	■■■■□ 3.08
PDPK1-213	ENST00000492021	PRDM2	Q13029	1718 aa		34.24	■■■■□ 3.07
PDPK1-213	ENST00000492021	KIF21A	Q7Z4S6	1674 aa		34.2	■■■■□ 3.07
PDPK1-213	ENST00000492021	FANCD2	Q9BXW9	1451 aa		34.16	■■■■□ 3.06
PDPK1-213	ENST00000492021	CEP164	Q9UPV0	1460 aa		34.09	■■■■□ 3.05
PDPK1-213	ENST00000492021	THOC2	Q8NI27	1593 aa	Known RBP	34.03	■■■■□ 3.04
PDPK1-213	ENST00000492021	MRC2	Q9UBG0	1479 aa		33.97	■■■■□ 3.03
PDPK1-213	ENST00000492021	WDR62	O43379	1518 aa		33.87	■■■■□ 3.01
PDPK1-213	ENST00000492021	CUX2	O14529	1486 aa		33.86	■■■■□ 3.01
PDPK1-213	ENST00000492021	URB2	Q14146	1524 aa	Known RBP	33.8	■■■■□ 3
PDPK1-213	ENST00000492021	ABCC8	Q09428	1581 aa		33.7	■■■□□ 2.99
PDPK1-213	ENST00000492021	DNMBP	Q6XZF7	1577 aa		33.68	■■■□□ 2.98
PDPK1-213	ENST00000492021	TOPBP1	Q92547	1522 aa		33.67	■■■□□ 2.98
PDPK1-213	ENST00000492021	CUX1	P39880	1505 aa		33.55	■■■□□ 2.96
PDPK1-213	ENST00000492021	WRN	Q14191	1432 aa	Predicted RBP eCLIP	33.47	■■■□□ 2.95
PDPK1-213	ENST00000492021	POLA1	P09884	1462 aa	Predicted RBP	33.41	■■■□□ 2.94
PDPK1-213	ENST00000492021	TOP2B	Q02880	1626 aa		33.39	■■■□□ 2.93
PDPK1-213	ENST00000492021	BIVM-ERCC5	R4GMW8	1640 aa		33.39	■■■□□ 2.93
PDPK1-213	ENST00000492021	SYNJ1	O43426	1573 aa		33.38	■■■□□ 2.93
PDPK1-213	ENST00000492021	IFT140	Q96RY7	1462 aa		33.37	■■■□□ 2.93
PDPK1-213	ENST00000492021	FGD5	Q6ZNL6	1462 aa		33.37	■■■□□ 2.93
PDPK1-213	ENST00000492021	TARBP1	Q13395	1621 aa	Known RBP	33.28	■■■□□ 2.92
PDPK1-213	ENST00000492021	SOGA1	O94964	1423 aa		33.24	■■■□□ 2.91
PDPK1-213	ENST00000492021	RAD54L2	Q9Y4B4	1467 aa		33.21	■■■□□ 2.91
PDPK1-213	ENST00000492021	ZNF608	Q9ULD9	1512 aa	Predicted RBP	33.14	■■■□□ 2.9
PDPK1-213	ENST00000492021	WDR97	A6NE52	1622 aa		33.13	■■■□□ 2.89
PDPK1-213	ENST00000492021	ABCA10	Q8WWZ4	1543 aa		33.1	■■■□□ 2.89
PDPK1-213	ENST00000492021	EIF4G3	O43432	1585 aa	Known RBP	33.08	■■■□□ 2.89
PDPK1-213	ENST00000492021	AQR	O60306	1485 aa	Known RBP eCLIP	32.99	■■■□□ 2.87	3e-6	■■■■□ 25.5
PDPK1-213	ENST00000492021	TDRD9	Q8NDG6	1382 aa	Known RBP	32.98	■■■□□ 2.87
PDPK1-213	ENST00000492021	ABCA5	Q8WWZ7	1642 aa		32.95	■■■□□ 2.86
PDPK1-213	ENST00000492021	GAPVD1	Q14C86	1478 aa		32.88	■■■□□ 2.85
PDPK1-213	ENST00000492021	TRIM41	Q8WV44	630 aa		32.86	■■■□□ 2.85
PDPK1-213	ENST00000492021	GRIN2B	Q13224	1484 aa		32.85	■■■□□ 2.85
PDPK1-213	ENST00000492021	PBRM1	Q86U86	1689 aa		32.81	■■■□□ 2.84
PDPK1-213	ENST00000492021	KIF27	Q86VH2	1401 aa		32.74	■■■□□ 2.83
PDPK1-213	ENST00000492021	SNAPC4	Q5SXM2	1469 aa		32.74	■■■□□ 2.83
PDPK1-213	ENST00000492021	MAGI1	Q96QZ7	1491 aa	Predicted RBP	32.74	■■■□□ 2.83
PDPK1-213	ENST00000492021	CHIC1	Q5VXU3	224 aa		32.73	■■■□□ 2.83
PDPK1-213	ENST00000492021	ERICH3	Q5RHP9	1530 aa		32.72	■■■□□ 2.83
PDPK1-213	ENST00000492021	ADAMTS12	P58397	1594 aa		32.6	■■■□□ 2.81
PDPK1-213	ENST00000492021	SYNJ2	O15056	1496 aa		32.6	■■■□□ 2.81
PDPK1-213	ENST00000492021	CHD1	O14646	1710 aa		32.56	■■■□□ 2.8
PDPK1-213	ENST00000492021	IGF1R	P08069	1367 aa		32.54	■■■□□ 2.8
PDPK1-213	ENST00000492021	FHAD1	B1AJZ9	1412 aa		32.53	■■■□□ 2.8
PDPK1-213	ENST00000492021	RUSC2	Q8N2Y8	1516 aa		32.51	■■■□□ 2.79
PDPK1-213	ENST00000492021	CUL7	Q14999	1698 aa		32.5	■■■□□ 2.79
PDPK1-213	ENST00000492021	CHMP7	Q8WUX9	453 aa	Predicted RBP	32.47	■■■□□ 2.79
PDPK1-213	ENST00000492021	FBLN2	P98095	1184 aa		32.46	■■■□□ 2.79
PDPK1-213	ENST00000492021	OSCAR	Q8IYS5	282 aa		32.44	■■■□□ 2.78
PDPK1-213	ENST00000492021	GRIN2A	Q12879	1464 aa		32.42	■■■□□ 2.78
PDPK1-213	ENST00000492021	EEA1	Q15075	1411 aa		32.41	■■■□□ 2.78
PDPK1-213	ENST00000492021	CARMIL1	Q5VZK9	1371 aa		32.35	■■■□□ 2.77
PDPK1-213	ENST00000492021	DNAJC5	Q9H3Z4	198 aa		32.29	■■■□□ 2.76
PDPK1-213	ENST00000492021	NUP160	Q12769	1436 aa		32.28	■■■□□ 2.76
PDPK1-213	ENST00000492021	CLASP1	Q7Z460	1538 aa		32.26	■■■□□ 2.76
PDPK1-213	ENST00000492021	CEP170	Q5SW79	1584 aa		32.24	■■■□□ 2.75
PDPK1-213	ENST00000492021	PRX	Q9BXM0	1461 aa		32.23	■■■□□ 2.75
PDPK1-213	ENST00000492021	RAPGEF2	Q9Y4G8	1499 aa		32.23	■■■□□ 2.75
PDPK1-213	ENST00000492021	CSRNP3	Q8WYN3	585 aa		32.22	■■■□□ 2.75
PDPK1-213	ENST00000492021	FAM9A	Q8IZU1	332 aa	Predicted RBP	32.12	■■■□□ 2.73
PDPK1-213	ENST00000492021	KIAA0586	Q9BVV6	1533 aa		32.05	■■■□□ 2.72
PDPK1-213	ENST00000492021	KIF21B	O75037	1637 aa		32.04	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 147.6 ms