RNA–Protein interactions for RNA: ENST00000490006.6

LINC01140-207, Transcript of long intergenic non-protein coding RNA 1140, humanhuman

TSL 2

Gene LINC01140, Length 1,389 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01140-207ENST00000490006 AEBP2Q6ZN18 517 aaPredicted RBP25.44■■□□□ 1.66
LINC01140-207ENST00000490006 NISCHQ9Y2I1 1504 aa24.72■■□□□ 1.55
LINC01140-207ENST00000490006 CHIC1Q5VXU3 224 aa23.91■■□□□ 1.42
LINC01140-207ENST00000490006 SENP3Q9H4L4 574 aaPredicted RBP21.74■■□□□ 1.07
LINC01140-207ENST00000490006 CCDC180Q9P1Z9 1646 aa21.69■■□□□ 1.06
LINC01140-207ENST00000490006 PHF23Q9BUL5 403 aaPredicted RBP21.44■■□□□ 1.02
LINC01140-207ENST00000490006 ABCC9O60706 1549 aa21.24■□□□□ 0.99
LINC01140-207ENST00000490006 DCAF8L2P0C7V8 631 aa20.98■□□□□ 0.95
LINC01140-207ENST00000490006 ZCCHC6Q5VYS8 1495 aaKnown RBP20.58■□□□□ 0.89
LINC01140-207ENST00000490006 NACADO15069 1562 aa20.4■□□□□ 0.86
LINC01140-207ENST00000490006 RB1CC1Q8TDY2 1594 aa20.39■□□□□ 0.85
LINC01140-207ENST00000490006 DCAF1Q9Y4B6 1507 aa20.32■□□□□ 0.84
LINC01140-207ENST00000490006 FOXD1Q16676 465 aa20.31■□□□□ 0.84
LINC01140-207ENST00000490006 MYO15BQ96JP2 1530 aa20.25■□□□□ 0.83
LINC01140-207ENST00000490006 PABPN1Q86U42 306 aaKnown RBP eCLIP20.04■□□□□ 0.8
LINC01140-207ENST00000490006 SHROOM4Q9ULL8 1493 aa20.03■□□□□ 0.8
LINC01140-207ENST00000490006 SCRIBQ14160 1630 aa20.03■□□□□ 0.8
LINC01140-207ENST00000490006 UNC13AQ9UPW8 1703 aa19.91■□□□□ 0.78
LINC01140-207ENST00000490006 BICRAQ9NZM4 1560 aa19.74■□□□□ 0.75
LINC01140-207ENST00000490006 CECR2Q9BXF3 1484 aa19.32■□□□□ 0.68
LINC01140-207ENST00000490006 DNAJC5BQ9UF47 199 aa19.3■□□□□ 0.68
LINC01140-207ENST00000490006 EIF4G1Q04637 1599 aaKnown RBP19.22■□□□□ 0.67
LINC01140-207ENST00000490006 CC2D2AQ9P2K1 1620 aa19.11■□□□□ 0.65
LINC01140-207ENST00000490006 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
LINC01140-207ENST00000490006 BAZ1AQ9NRL2 1556 aaPredicted RBP19.1■□□□□ 0.65
LINC01140-207ENST00000490006 MSH5O43196 834 aa19.1■□□□□ 0.65
LINC01140-207ENST00000490006 SMARCA4P51532 1647 aa19.08■□□□□ 0.65
LINC01140-207ENST00000490006 PLPPR3Q6T4P5 718 aa19.08■□□□□ 0.65
LINC01140-207ENST00000490006 POTEDQ86YR6 584 aa19.07■□□□□ 0.64
LINC01140-207ENST00000490006 SUPT5HO00267 1087 aaKnown RBP19.06■□□□□ 0.64
LINC01140-207ENST00000490006 RSF1Q96T23 1441 aaPredicted RBP19.01■□□□□ 0.63
LINC01140-207ENST00000490006 ATAD2BQ9ULI0 1458 aa18.96■□□□□ 0.63
LINC01140-207ENST00000490006 WIZO95785 1651 aa18.93■□□□□ 0.62
LINC01140-207ENST00000490006 PIAS4Q8N2W9 510 aaPredicted RBP18.92■□□□□ 0.62
LINC01140-207ENST00000490006 SMARCA2P51531 1590 aa18.89■□□□□ 0.62
LINC01140-207ENST00000490006 NCAPD3P42695 1498 aa18.86■□□□□ 0.61
LINC01140-207ENST00000490006 BAZ1BQ9UIG0 1483 aaKnown RBP18.84■□□□□ 0.61
LINC01140-207ENST00000490006 PPP6R1Q9UPN7 881 aa18.79■□□□□ 0.6
LINC01140-207ENST00000490006 PEG3Q9GZU2 1588 aa18.78■□□□□ 0.6
LINC01140-207ENST00000490006 ADRA2BP18089 450 aa18.71■□□□□ 0.59
LINC01140-207ENST00000490006 HMGXB3Q12766 1538 aa18.71■□□□□ 0.59
LINC01140-207ENST00000490006 TOP2AP11388 1531 aaKnown RBP18.65■□□□□ 0.58
LINC01140-207ENST00000490006 CCDC88BA6NC98 1476 aa18.54■□□□□ 0.56
LINC01140-207ENST00000490006 NESP48681 1621 aa18.44■□□□□ 0.54
LINC01140-207ENST00000490006 CADPSQ9ULU8 1353 aa18.41■□□□□ 0.54
LINC01140-207ENST00000490006 CFTRP13569 1480 aa18.28■□□□□ 0.52
LINC01140-207ENST00000490006 ERCC6Q03468 1493 aa18.28■□□□□ 0.52
LINC01140-207ENST00000490006 LAMC3Q9Y6N6 1575 aa18.27■□□□□ 0.52
LINC01140-207ENST00000490006 PDS5BQ9NTI5 1447 aa18.25■□□□□ 0.51
LINC01140-207ENST00000490006 FANCD2Q9BXW9 1451 aa18.19■□□□□ 0.5
LINC01140-207ENST00000490006 KIF21AQ7Z4S6 1674 aa18.14■□□□□ 0.49
LINC01140-207ENST00000490006 CEP164Q9UPV0 1460 aa18.11■□□□□ 0.49
LINC01140-207ENST00000490006 PRDM2Q13029 1718 aa18.07■□□□□ 0.48
LINC01140-207ENST00000490006 MRC2Q9UBG0 1479 aa18.01■□□□□ 0.47
LINC01140-207ENST00000490006 ABCC8Q09428 1581 aa17.98■□□□□ 0.47
LINC01140-207ENST00000490006 URB2Q14146 1524 aaKnown RBP17.97■□□□□ 0.47
LINC01140-207ENST00000490006 WRNQ14191 1432 aaPredicted RBP eCLIP17.92■□□□□ 0.46
LINC01140-207ENST00000490006 THOC2Q8NI27 1593 aaKnown RBP17.92■□□□□ 0.46
LINC01140-207ENST00000490006 TRIM41Q8WV44 630 aa17.91■□□□□ 0.46
LINC01140-207ENST00000490006 TOPBP1Q92547 1522 aa17.91■□□□□ 0.46
LINC01140-207ENST00000490006 CUX1P39880 1505 aa17.89■□□□□ 0.45
LINC01140-207ENST00000490006 WDR62O43379 1518 aa17.86■□□□□ 0.45
LINC01140-207ENST00000490006 DNMBPQ6XZF7 1577 aa17.86■□□□□ 0.45
LINC01140-207ENST00000490006 SYNJ1O43426 1573 aa17.81■□□□□ 0.44
LINC01140-207ENST00000490006 SOGA1O94964 1423 aa17.8■□□□□ 0.44
LINC01140-207ENST00000490006 CUX2O14529 1486 aa17.8■□□□□ 0.44
LINC01140-207ENST00000490006 FGD5Q6ZNL6 1462 aa17.79■□□□□ 0.44
LINC01140-207ENST00000490006 RAD54L2Q9Y4B4 1467 aa17.79■□□□□ 0.44
LINC01140-207ENST00000490006 POLA1P09884 1462 aaPredicted RBP17.77■□□□□ 0.44
LINC01140-207ENST00000490006 TOP2BQ02880 1626 aa17.75■□□□□ 0.43
LINC01140-207ENST00000490006 TDRD9Q8NDG6 1382 aaKnown RBP17.72■□□□□ 0.43
LINC01140-207ENST00000490006 BIVM-ERCC5R4GMW8 1640 aa17.71■□□□□ 0.43
LINC01140-207ENST00000490006 IFT140Q96RY7 1462 aa17.7■□□□□ 0.42
LINC01140-207ENST00000490006 FAM9AQ8IZU1 332 aaPredicted RBP17.67■□□□□ 0.42
LINC01140-207ENST00000490006 ZNF608Q9ULD9 1512 aaPredicted RBP17.67■□□□□ 0.42
LINC01140-207ENST00000490006 AQRO60306 1485 aaKnown RBP eCLIP17.67■□□□□ 0.42
LINC01140-207ENST00000490006 TARBP1Q13395 1621 aaKnown RBP17.62■□□□□ 0.41
LINC01140-207ENST00000490006 FBLN2P98095 1184 aa17.58■□□□□ 0.4
LINC01140-207ENST00000490006 ABCA10Q8WWZ4 1543 aa17.58■□□□□ 0.4
LINC01140-207ENST00000490006 GAPVD1Q14C86 1478 aa17.55■□□□□ 0.4
LINC01140-207ENST00000490006 RUSC2Q8N2Y8 1516 aa17.54■□□□□ 0.4
LINC01140-207ENST00000490006 KIF27Q86VH2 1401 aa17.53■□□□□ 0.4
LINC01140-207ENST00000490006 EHMT2Q96KQ7 1210 aa17.53■□□□□ 0.4
LINC01140-207ENST00000490006 EIF4G3O43432 1585 aaKnown RBP17.51■□□□□ 0.39
LINC01140-207ENST00000490006 WDR97A6NE52 1622 aa17.48■□□□□ 0.39
LINC01140-207ENST00000490006 CHMP7Q8WUX9 453 aaPredicted RBP17.48■□□□□ 0.39
LINC01140-207ENST00000490006 GRIN2BQ13224 1484 aa17.47■□□□□ 0.39
LINC01140-207ENST00000490006 IGF1RP08069 1367 aa17.46■□□□□ 0.39
LINC01140-207ENST00000490006 CSRNP3Q8WYN3 585 aa17.45■□□□□ 0.38
LINC01140-207ENST00000490006 SNAPC4Q5SXM2 1469 aa17.43■□□□□ 0.38
LINC01140-207ENST00000490006 ABCA5Q8WWZ7 1642 aa17.42■□□□□ 0.38
LINC01140-207ENST00000490006 PBRM1Q86U86 1689 aa17.41■□□□□ 0.38
LINC01140-207ENST00000490006 CARMIL1Q5VZK9 1371 aa17.39■□□□□ 0.37
LINC01140-207ENST00000490006 ERICH3Q5RHP9 1530 aa17.35■□□□□ 0.37
LINC01140-207ENST00000490006 OSCARQ8IYS5 282 aa17.35■□□□□ 0.37
LINC01140-207ENST00000490006 MAGI1Q96QZ7 1491 aaPredicted RBP17.34■□□□□ 0.37
LINC01140-207ENST00000490006 FHAD1B1AJZ9 1412 aa17.33■□□□□ 0.37
LINC01140-207ENST00000490006 EEA1Q15075 1411 aa17.32■□□□□ 0.36
LINC01140-207ENST00000490006 SYNJ2O15056 1496 aa17.3■□□□□ 0.36
LINC01140-207ENST00000490006 UBTFP17480 764 aaKnown RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms