RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 NISCHQ9Y2I1 1504 aa26.03■■□□□ 1.76
VPS13D-210ENST00000489961 CCDC180Q9P1Z9 1646 aa23.1■■□□□ 1.29
VPS13D-210ENST00000489961 ABCC9O60706 1549 aa22.37■■□□□ 1.17
VPS13D-210ENST00000489961 ZCCHC6Q5VYS8 1495 aaKnown RBP21.72■■□□□ 1.07
VPS13D-210ENST00000489961 DCAF8L2P0C7V8 631 aa21.68■■□□□ 1.06
VPS13D-210ENST00000489961 NACADO15069 1562 aa21.65■■□□□ 1.06
VPS13D-210ENST00000489961 RB1CC1Q8TDY2 1594 aa21.65■■□□□ 1.06
VPS13D-210ENST00000489961 MYO15BQ96JP2 1530 aa21.58■■□□□ 1.04
VPS13D-210ENST00000489961 DCAF1Q9Y4B6 1507 aa21.55■■□□□ 1.04
VPS13D-210ENST00000489961 UNC13AQ9UPW8 1703 aa21.15■□□□□ 0.98
VPS13D-210ENST00000489961 SCRIBQ14160 1630 aa21.07■□□□□ 0.96
VPS13D-210ENST00000489961 BICRAQ9NZM4 1560 aa20.94■□□□□ 0.94
VPS13D-210ENST00000489961 PABPN1Q86U42 306 aaKnown RBP eCLIP20.92■□□□□ 0.94
VPS13D-210ENST00000489961 SHROOM4Q9ULL8 1493 aa20.78■□□□□ 0.92
VPS13D-210ENST00000489961 EIF4G1Q04637 1599 aaKnown RBP20.39■□□□□ 0.85
VPS13D-210ENST00000489961 DNAJC5BQ9UF47 199 aa20.31■□□□□ 0.84
VPS13D-210ENST00000489961 CC2D2AQ9P2K1 1620 aa20.26■□□□□ 0.83
VPS13D-210ENST00000489961 CECR2Q9BXF3 1484 aa20.23■□□□□ 0.83
VPS13D-210ENST00000489961 BAZ1AQ9NRL2 1556 aaPredicted RBP20.18■□□□□ 0.82
VPS13D-210ENST00000489961 SMARCA4P51532 1647 aa20.17■□□□□ 0.82
VPS13D-210ENST00000489961 MROH2BQ7Z745 1585 aa20.05■□□□□ 0.8
VPS13D-210ENST00000489961 SMARCA2P51531 1590 aa20.01■□□□□ 0.79
VPS13D-210ENST00000489961 ATAD2BQ9ULI0 1458 aa19.99■□□□□ 0.79
VPS13D-210ENST00000489961 PEG3Q9GZU2 1588 aa19.96■□□□□ 0.79
VPS13D-210ENST00000489961 NCAPD3P42695 1498 aa19.96■□□□□ 0.79
VPS13D-210ENST00000489961 HMGXB3Q12766 1538 aa19.9■□□□□ 0.78
VPS13D-210ENST00000489961 RSF1Q96T23 1441 aaPredicted RBP19.89■□□□□ 0.77
VPS13D-210ENST00000489961 WIZO95785 1651 aa19.87■□□□□ 0.77
VPS13D-210ENST00000489961 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
VPS13D-210ENST00000489961 TOP2AP11388 1531 aaKnown RBP19.67■□□□□ 0.74
VPS13D-210ENST00000489961 SUPT5HO00267 1087 aaKnown RBP19.54■□□□□ 0.72
VPS13D-210ENST00000489961 LAMC3Q9Y6N6 1575 aa19.43■□□□□ 0.7
VPS13D-210ENST00000489961 CCDC88BA6NC98 1476 aa19.41■□□□□ 0.7
VPS13D-210ENST00000489961 NESP48681 1621 aa19.41■□□□□ 0.7
VPS13D-210ENST00000489961 CADPSQ9ULU8 1353 aa19.39■□□□□ 0.69
VPS13D-210ENST00000489961 CFTRP13569 1480 aa19.31■□□□□ 0.68
VPS13D-210ENST00000489961 ERCC6Q03468 1493 aa19.3■□□□□ 0.68
VPS13D-210ENST00000489961 PDS5BQ9NTI5 1447 aa19.28■□□□□ 0.68
VPS13D-210ENST00000489961 PRDM2Q13029 1718 aa19.25■□□□□ 0.67
VPS13D-210ENST00000489961 KIF21AQ7Z4S6 1674 aa19.23■□□□□ 0.67
VPS13D-210ENST00000489961 FANCD2Q9BXW9 1451 aa19.17■□□□□ 0.66
VPS13D-210ENST00000489961 CEP164Q9UPV0 1460 aa19.15■□□□□ 0.66
VPS13D-210ENST00000489961 THOC2Q8NI27 1593 aaKnown RBP19.1■□□□□ 0.65
VPS13D-210ENST00000489961 MRC2Q9UBG0 1479 aa19.07■□□□□ 0.64
VPS13D-210ENST00000489961 CUX2O14529 1486 aa19.02■□□□□ 0.63
VPS13D-210ENST00000489961 WDR62O43379 1518 aa19■□□□□ 0.63
VPS13D-210ENST00000489961 URB2Q14146 1524 aaKnown RBP18.95■□□□□ 0.62
VPS13D-210ENST00000489961 ABCC8Q09428 1581 aa18.93■□□□□ 0.62
VPS13D-210ENST00000489961 DNMBPQ6XZF7 1577 aa18.89■□□□□ 0.62
VPS13D-210ENST00000489961 TOPBP1Q92547 1522 aa18.89■□□□□ 0.61
VPS13D-210ENST00000489961 CUX1P39880 1505 aa18.8■□□□□ 0.6
VPS13D-210ENST00000489961 WRNQ14191 1432 aaPredicted RBP eCLIP18.77■□□□□ 0.6
VPS13D-210ENST00000489961 POLA1P09884 1462 aaPredicted RBP18.73■□□□□ 0.59
VPS13D-210ENST00000489961 IFT140Q96RY7 1462 aa18.73■□□□□ 0.59
VPS13D-210ENST00000489961 BIVM-ERCC5R4GMW8 1640 aa18.73■□□□□ 0.59
VPS13D-210ENST00000489961 FGD5Q6ZNL6 1462 aa18.72■□□□□ 0.59
VPS13D-210ENST00000489961 TOP2BQ02880 1626 aa18.72■□□□□ 0.59
VPS13D-210ENST00000489961 SYNJ1O43426 1573 aa18.71■□□□□ 0.59
VPS13D-210ENST00000489961 TARBP1Q13395 1621 aaKnown RBP18.67■□□□□ 0.58
VPS13D-210ENST00000489961 SOGA1O94964 1423 aa18.66■□□□□ 0.58
VPS13D-210ENST00000489961 RAD54L2Q9Y4B4 1467 aa18.64■□□□□ 0.57
VPS13D-210ENST00000489961 ZNF608Q9ULD9 1512 aaPredicted RBP18.6■□□□□ 0.57
VPS13D-210ENST00000489961 WDR97A6NE52 1622 aa18.58■□□□□ 0.56
VPS13D-210ENST00000489961 EIF4G3O43432 1585 aaKnown RBP18.57■□□□□ 0.56
VPS13D-210ENST00000489961 ABCA10Q8WWZ4 1543 aa18.54■□□□□ 0.56
VPS13D-210ENST00000489961 TDRD9Q8NDG6 1382 aaKnown RBP18.53■□□□□ 0.56
VPS13D-210ENST00000489961 AQRO60306 1485 aaKnown RBP eCLIP18.52■□□□□ 0.564e-9■■■■□ 24.7
VPS13D-210ENST00000489961 ABCA5Q8WWZ7 1642 aa18.47■□□□□ 0.55
VPS13D-210ENST00000489961 GAPVD1Q14C86 1478 aa18.46■□□□□ 0.55
VPS13D-210ENST00000489961 TRIM41Q8WV44 630 aa18.46■□□□□ 0.55
VPS13D-210ENST00000489961 PBRM1Q86U86 1689 aa18.44■□□□□ 0.54
VPS13D-210ENST00000489961 GRIN2BQ13224 1484 aa18.44■□□□□ 0.54
VPS13D-210ENST00000489961 KIF27Q86VH2 1401 aa18.38■□□□□ 0.53
VPS13D-210ENST00000489961 SNAPC4Q5SXM2 1469 aa18.38■□□□□ 0.53
VPS13D-210ENST00000489961 MAGI1Q96QZ7 1491 aaPredicted RBP18.37■□□□□ 0.53
VPS13D-210ENST00000489961 ERICH3Q5RHP9 1530 aa18.35■□□□□ 0.53
VPS13D-210ENST00000489961 CHIC1Q5VXU3 224 aa18.33■□□□□ 0.52
VPS13D-210ENST00000489961 CHD1O14646 1710 aa18.32■□□□□ 0.52
VPS13D-210ENST00000489961 SYNJ2O15056 1496 aa18.29■□□□□ 0.52
VPS13D-210ENST00000489961 FBLN2P98095 1184 aa18.29■□□□□ 0.52
VPS13D-210ENST00000489961 ADAMTS12P58397 1594 aa18.28■□□□□ 0.52
VPS13D-210ENST00000489961 CHMP7Q8WUX9 453 aaPredicted RBP18.27■□□□□ 0.52
VPS13D-210ENST00000489961 OSCARQ8IYS5 282 aa18.26■□□□□ 0.51
VPS13D-210ENST00000489961 FHAD1B1AJZ9 1412 aa18.25■□□□□ 0.51
VPS13D-210ENST00000489961 IGF1RP08069 1367 aa18.24■□□□□ 0.51
VPS13D-210ENST00000489961 CUL7Q14999 1698 aa18.24■□□□□ 0.51
VPS13D-210ENST00000489961 RUSC2Q8N2Y8 1516 aa18.23■□□□□ 0.51
VPS13D-210ENST00000489961 GRIN2AQ12879 1464 aa18.2■□□□□ 0.5
VPS13D-210ENST00000489961 DNAJC5Q9H3Z4 198 aa18.18■□□□□ 0.5
VPS13D-210ENST00000489961 CARMIL1Q5VZK9 1371 aa18.17■□□□□ 0.5
VPS13D-210ENST00000489961 EEA1Q15075 1411 aa18.16■□□□□ 0.5
VPS13D-210ENST00000489961 CLASP1Q7Z460 1538 aa18.09■□□□□ 0.49
VPS13D-210ENST00000489961 NUP160Q12769 1436 aa18.09■□□□□ 0.49
VPS13D-210ENST00000489961 CSRNP3Q8WYN3 585 aa18.09■□□□□ 0.49
VPS13D-210ENST00000489961 CEP170Q5SW79 1584 aa18.08■□□□□ 0.49
VPS13D-210ENST00000489961 RAPGEF2Q9Y4G8 1499 aa18.08■□□□□ 0.49
VPS13D-210ENST00000489961 FAM9AQ8IZU1 332 aaPredicted RBP18.06■□□□□ 0.48
VPS13D-210ENST00000489961 PRXQ9BXM0 1461 aa18.04■□□□□ 0.48
VPS13D-210ENST00000489961 KIAA0586Q9BVV6 1533 aa17.98■□□□□ 0.47
VPS13D-210ENST00000489961 KIF21BO75037 1637 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms