RNA–Protein interactions for RNA: ENST00000488846.1

SMKR1-202, Transcript of small lysine rich protein 1, humanhuman

TSL 3

Gene SMKR1, Length 424 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1-202ENST00000488846 NISCHQ9Y2I1 1504 aa21.5■■□□□ 1.03
SMKR1-202ENST00000488846 CCDC180Q9P1Z9 1646 aa19.07■□□□□ 0.64
SMKR1-202ENST00000488846 ABCC9O60706 1549 aa18.48■□□□□ 0.55
SMKR1-202ENST00000488846 ZCCHC6Q5VYS8 1495 aaKnown RBP17.95■□□□□ 0.46
SMKR1-202ENST00000488846 NACADO15069 1562 aa17.91■□□□□ 0.46
SMKR1-202ENST00000488846 MYO15BQ96JP2 1530 aa17.91■□□□□ 0.46
SMKR1-202ENST00000488846 RB1CC1Q8TDY2 1594 aa17.87■□□□□ 0.45
SMKR1-202ENST00000488846 DCAF1Q9Y4B6 1507 aa17.86■□□□□ 0.45
SMKR1-202ENST00000488846 DCAF8L2P0C7V8 631 aa17.76■□□□□ 0.43
SMKR1-202ENST00000488846 UNC13AQ9UPW8 1703 aa17.47■□□□□ 0.39
SMKR1-202ENST00000488846 BICRAQ9NZM4 1560 aa17.36■□□□□ 0.37
SMKR1-202ENST00000488846 SCRIBQ14160 1630 aa17.33■□□□□ 0.37
SMKR1-202ENST00000488846 PABPN1Q86U42 306 aaKnown RBP eCLIP17.27■□□□□ 0.36
SMKR1-202ENST00000488846 SHROOM4Q9ULL8 1493 aa17.24■□□□□ 0.35
SMKR1-202ENST00000488846 AEBP2Q6ZN18 517 aaPredicted RBP17.15■□□□□ 0.34
SMKR1-202ENST00000488846 DNAJC5BQ9UF47 199 aa16.9■□□□□ 0.3
SMKR1-202ENST00000488846 EIF4G1Q04637 1599 aaKnown RBP16.87■□□□□ 0.29
SMKR1-202ENST00000488846 CC2D2AQ9P2K1 1620 aa16.76■□□□□ 0.27
SMKR1-202ENST00000488846 CECR2Q9BXF3 1484 aa16.71■□□□□ 0.27
SMKR1-202ENST00000488846 CHIC1Q5VXU3 224 aa16.68■□□□□ 0.26
SMKR1-202ENST00000488846 SMARCA4P51532 1647 aa16.65■□□□□ 0.26
SMKR1-202ENST00000488846 BAZ1AQ9NRL2 1556 aaPredicted RBP16.64■□□□□ 0.25
SMKR1-202ENST00000488846 MROH2BQ7Z745 1585 aa16.55■□□□□ 0.24
SMKR1-202ENST00000488846 NCAPD3P42695 1498 aa16.55■□□□□ 0.24
SMKR1-202ENST00000488846 PEG3Q9GZU2 1588 aa16.55■□□□□ 0.24
SMKR1-202ENST00000488846 ATAD2BQ9ULI0 1458 aa16.54■□□□□ 0.24
SMKR1-202ENST00000488846 SMARCA2P51531 1590 aa16.52■□□□□ 0.24
SMKR1-202ENST00000488846 HMGXB3Q12766 1538 aa16.46■□□□□ 0.23
SMKR1-202ENST00000488846 RSF1Q96T23 1441 aaPredicted RBP16.43■□□□□ 0.22
SMKR1-202ENST00000488846 BAZ1BQ9UIG0 1483 aaKnown RBP16.37■□□□□ 0.21
SMKR1-202ENST00000488846 WIZO95785 1651 aa16.36■□□□□ 0.21
SMKR1-202ENST00000488846 TOP2AP11388 1531 aaKnown RBP16.22■□□□□ 0.19
SMKR1-202ENST00000488846 LAMC3Q9Y6N6 1575 aa16.06■□□□□ 0.16
SMKR1-202ENST00000488846 NESP48681 1621 aa16.05■□□□□ 0.16
SMKR1-202ENST00000488846 CADPSQ9ULU8 1353 aa16.04■□□□□ 0.16
SMKR1-202ENST00000488846 CCDC88BA6NC98 1476 aa16.03■□□□□ 0.16
SMKR1-202ENST00000488846 CFTRP13569 1480 aa15.99■□□□□ 0.15
SMKR1-202ENST00000488846 SUPT5HO00267 1087 aaKnown RBP15.96■□□□□ 0.15
SMKR1-202ENST00000488846 PDS5BQ9NTI5 1447 aa15.94■□□□□ 0.14
SMKR1-202ENST00000488846 ERCC6Q03468 1493 aa15.9■□□□□ 0.14
SMKR1-202ENST00000488846 KIF21AQ7Z4S6 1674 aa15.86■□□□□ 0.13
SMKR1-202ENST00000488846 PRDM2Q13029 1718 aa15.84■□□□□ 0.13
SMKR1-202ENST00000488846 FANCD2Q9BXW9 1451 aa15.84■□□□□ 0.13
SMKR1-202ENST00000488846 THOC2Q8NI27 1593 aaKnown RBP15.82■□□□□ 0.12
SMKR1-202ENST00000488846 CEP164Q9UPV0 1460 aa15.79■□□□□ 0.12
SMKR1-202ENST00000488846 CUX2O14529 1486 aa15.78■□□□□ 0.12
SMKR1-202ENST00000488846 MRC2Q9UBG0 1479 aa15.76■□□□□ 0.11
SMKR1-202ENST00000488846 WDR62O43379 1518 aa15.73■□□□□ 0.11
SMKR1-202ENST00000488846 URB2Q14146 1524 aaKnown RBP15.68■□□□□ 0.1
SMKR1-202ENST00000488846 ABCC8Q09428 1581 aa15.62■□□□□ 0.09
SMKR1-202ENST00000488846 TOPBP1Q92547 1522 aa15.6■□□□□ 0.09
SMKR1-202ENST00000488846 DNMBPQ6XZF7 1577 aa15.59■□□□□ 0.09
SMKR1-202ENST00000488846 CUX1P39880 1505 aa15.53■□□□□ 0.08
SMKR1-202ENST00000488846 POLA1P09884 1462 aaPredicted RBP15.48■□□□□ 0.07
SMKR1-202ENST00000488846 IFT140Q96RY7 1462 aa15.47■□□□□ 0.07
SMKR1-202ENST00000488846 WRNQ14191 1432 aaPredicted RBP eCLIP15.45■□□□□ 0.06
SMKR1-202ENST00000488846 TARBP1Q13395 1621 aaKnown RBP15.44■□□□□ 0.06
SMKR1-202ENST00000488846 FGD5Q6ZNL6 1462 aa15.44■□□□□ 0.06
SMKR1-202ENST00000488846 TOP2BQ02880 1626 aa15.43■□□□□ 0.06
SMKR1-202ENST00000488846 BIVM-ERCC5R4GMW8 1640 aa15.43■□□□□ 0.06
SMKR1-202ENST00000488846 SYNJ1O43426 1573 aa15.41■□□□□ 0.06
SMKR1-202ENST00000488846 SOGA1O94964 1423 aa15.4■□□□□ 0.06
SMKR1-202ENST00000488846 ZNF608Q9ULD9 1512 aaPredicted RBP15.38■□□□□ 0.05
SMKR1-202ENST00000488846 RAD54L2Q9Y4B4 1467 aa15.38■□□□□ 0.05
SMKR1-202ENST00000488846 WDR97A6NE52 1622 aa15.35■□□□□ 0.05
SMKR1-202ENST00000488846 ABCA10Q8WWZ4 1543 aa15.33■□□□□ 0.05
SMKR1-202ENST00000488846 EIF4G3O43432 1585 aaKnown RBP15.32■□□□□ 0.04
SMKR1-202ENST00000488846 AQRO60306 1485 aaKnown RBP eCLIP15.3■□□□□ 0.04
SMKR1-202ENST00000488846 TDRD9Q8NDG6 1382 aaKnown RBP15.28■□□□□ 0.04
SMKR1-202ENST00000488846 ABCA5Q8WWZ7 1642 aa15.25■□□□□ 0.03
SMKR1-202ENST00000488846 GAPVD1Q14C86 1478 aa15.23■□□□□ 0.03
SMKR1-202ENST00000488846 GRIN2BQ13224 1484 aa15.21■□□□□ 0.03
SMKR1-202ENST00000488846 MAGI1Q96QZ7 1491 aaPredicted RBP15.18■□□□□ 0.02
SMKR1-202ENST00000488846 PBRM1Q86U86 1689 aa15.17■□□□□ 0.02
SMKR1-202ENST00000488846 SNAPC4Q5SXM2 1469 aa15.15■□□□□ 0.02
SMKR1-202ENST00000488846 DNAJC5Q9H3Z4 198 aa15.15■□□□□ 0.02
SMKR1-202ENST00000488846 ERICH3Q5RHP9 1530 aa15.15■□□□□ 0.02
SMKR1-202ENST00000488846 KIF27Q86VH2 1401 aa15.12■□□□□ 0.01
SMKR1-202ENST00000488846 TRIM41Q8WV44 630 aa15.11■□□□□ 0.01
SMKR1-202ENST00000488846 SYNJ2O15056 1496 aa15.11■□□□□ 0.01
SMKR1-202ENST00000488846 OSCARQ8IYS5 282 aa15.1■□□□□ 0.01
SMKR1-202ENST00000488846 IGF1RP08069 1367 aa15.09■□□□□ 0.01
SMKR1-202ENST00000488846 CHD1O14646 1710 aa15.09■□□□□ 0.01
SMKR1-202ENST00000488846 ADAMTS12P58397 1594 aa15.08■□□□□ 0
SMKR1-202ENST00000488846 FHAD1B1AJZ9 1412 aa15.07■□□□□ 0
SMKR1-202ENST00000488846 CHMP7Q8WUX9 453 aaPredicted RBP15.04■□□□□ -0
SMKR1-202ENST00000488846 GRIN2AQ12879 1464 aa15.02■□□□□ -0
SMKR1-202ENST00000488846 CUL7Q14999 1698 aa15.01□□□□□ -0.01
SMKR1-202ENST00000488846 FBLN2P98095 1184 aa15.01□□□□□ -0.01
SMKR1-202ENST00000488846 RUSC2Q8N2Y8 1516 aa15.01□□□□□ -0.01
SMKR1-202ENST00000488846 CLASP1Q7Z460 1538 aa14.99□□□□□ -0.01
SMKR1-202ENST00000488846 NUP160Q12769 1436 aa14.99□□□□□ -0.01
SMKR1-202ENST00000488846 CARMIL1Q5VZK9 1371 aa14.97□□□□□ -0.01
SMKR1-202ENST00000488846 CEP170Q5SW79 1584 aa14.94□□□□□ -0.02
SMKR1-202ENST00000488846 EEA1Q15075 1411 aa14.92□□□□□ -0.02
SMKR1-202ENST00000488846 PRXQ9BXM0 1461 aa14.9□□□□□ -0.02
SMKR1-202ENST00000488846 RAPGEF2Q9Y4G8 1499 aa14.89□□□□□ -0.03
SMKR1-202ENST00000488846 ARHGEF11O15085 1522 aa14.87□□□□□ -0.03
SMKR1-202ENST00000488846 CSRNP3Q8WYN3 585 aa14.86□□□□□ -0.03
SMKR1-202ENST00000488846 KIAA0586Q9BVV6 1533 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms