RNA–Protein interactions for RNA: ENST00000488072.1

SHROOM1-205, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 423 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-205ENST00000488072 NISCHQ9Y2I1 1504 aa41.29■■■■■ 4.2
SHROOM1-205ENST00000488072 CCDC180Q9P1Z9 1646 aa36.41■■■■□ 3.42
SHROOM1-205ENST00000488072 ABCC9O60706 1549 aa35.74■■■■□ 3.31
SHROOM1-205ENST00000488072 DCAF8L2P0C7V8 631 aa34.63■■■■□ 3.13
SHROOM1-205ENST00000488072 ZCCHC6Q5VYS8 1495 aaKnown RBP34.43■■■■□ 3.1
SHROOM1-205ENST00000488072 NACADO15069 1562 aa34.23■■■■□ 3.07
SHROOM1-205ENST00000488072 RB1CC1Q8TDY2 1594 aa34.23■■■■□ 3.07
SHROOM1-205ENST00000488072 MYO15BQ96JP2 1530 aa34.02■■■■□ 3.04
SHROOM1-205ENST00000488072 DCAF1Q9Y4B6 1507 aa34.01■■■■□ 3.04
SHROOM1-205ENST00000488072 PABPN1Q86U42 306 aaKnown RBP eCLIP33.56■■■□□ 2.96
SHROOM1-205ENST00000488072 UNC13AQ9UPW8 1703 aa33.53■■■□□ 2.96
SHROOM1-205ENST00000488072 SCRIBQ14160 1630 aa33.5■■■□□ 2.95
SHROOM1-205ENST00000488072 BICRAQ9NZM4 1560 aa33.35■■■□□ 2.93
SHROOM1-205ENST00000488072 SHROOM4Q9ULL8 1493 aa33.05■■■□□ 2.88
SHROOM1-205ENST00000488072 DNAJC5BQ9UF47 199 aa32.77■■■□□ 2.84
SHROOM1-205ENST00000488072 EIF4G1Q04637 1599 aaKnown RBP32.4■■■□□ 2.78
SHROOM1-205ENST00000488072 CECR2Q9BXF3 1484 aa32.31■■■□□ 2.76
SHROOM1-205ENST00000488072 CC2D2AQ9P2K1 1620 aa32.23■■■□□ 2.75
SHROOM1-205ENST00000488072 SMARCA4P51532 1647 aa31.97■■■□□ 2.71
SHROOM1-205ENST00000488072 MROH2BQ7Z745 1585 aa31.93■■■□□ 2.7
SHROOM1-205ENST00000488072 BAZ1AQ9NRL2 1556 aaPredicted RBP31.9■■■□□ 2.7
SHROOM1-205ENST00000488072 ATAD2BQ9ULI0 1458 aa31.79■■■□□ 2.68
SHROOM1-205ENST00000488072 NCAPD3P42695 1498 aa31.67■■■□□ 2.66
SHROOM1-205ENST00000488072 RSF1Q96T23 1441 aaPredicted RBP31.63■■■□□ 2.65
SHROOM1-205ENST00000488072 SMARCA2P51531 1590 aa31.62■■■□□ 2.65
SHROOM1-205ENST00000488072 WIZO95785 1651 aa31.57■■■□□ 2.65
SHROOM1-205ENST00000488072 PEG3Q9GZU2 1588 aa31.56■■■□□ 2.64
SHROOM1-205ENST00000488072 BAZ1BQ9UIG0 1483 aaKnown RBP31.5■■■□□ 2.63
SHROOM1-205ENST00000488072 HMGXB3Q12766 1538 aa31.46■■■□□ 2.63
SHROOM1-205ENST00000488072 TOP2AP11388 1531 aaKnown RBP31.15■■■□□ 2.58
SHROOM1-205ENST00000488072 SUPT5HO00267 1087 aaKnown RBP31.15■■■□□ 2.58
SHROOM1-205ENST00000488072 NESP48681 1621 aa31.04■■■□□ 2.56
SHROOM1-205ENST00000488072 CCDC88BA6NC98 1476 aa30.89■■■□□ 2.54
SHROOM1-205ENST00000488072 CADPSQ9ULU8 1353 aa30.8■■■□□ 2.52
SHROOM1-205ENST00000488072 LAMC3Q9Y6N6 1575 aa30.71■■■□□ 2.51
SHROOM1-205ENST00000488072 ERCC6Q03468 1493 aa30.66■■■□□ 2.5
SHROOM1-205ENST00000488072 CFTRP13569 1480 aa30.64■■■□□ 2.5
SHROOM1-205ENST00000488072 PDS5BQ9NTI5 1447 aa30.55■■■□□ 2.48
SHROOM1-205ENST00000488072 KIF21AQ7Z4S6 1674 aa30.52■■■□□ 2.48
SHROOM1-205ENST00000488072 FANCD2Q9BXW9 1451 aa30.46■■■□□ 2.47
SHROOM1-205ENST00000488072 CEP164Q9UPV0 1460 aa30.35■■■□□ 2.45
SHROOM1-205ENST00000488072 THOC2Q8NI27 1593 aaKnown RBP30.35■■■□□ 2.45
SHROOM1-205ENST00000488072 MRC2Q9UBG0 1479 aa30.28■■■□□ 2.44
SHROOM1-205ENST00000488072 PRDM2Q13029 1718 aa30.25■■■□□ 2.43
SHROOM1-205ENST00000488072 URB2Q14146 1524 aaKnown RBP30.21■■■□□ 2.43
SHROOM1-205ENST00000488072 CUX2O14529 1486 aa30.15■■■□□ 2.42
SHROOM1-205ENST00000488072 WDR62O43379 1518 aa30.14■■■□□ 2.42
SHROOM1-205ENST00000488072 TOPBP1Q92547 1522 aa30.01■■■□□ 2.39
SHROOM1-205ENST00000488072 DNMBPQ6XZF7 1577 aa29.92■■■□□ 2.38
SHROOM1-205ENST00000488072 CUX1P39880 1505 aa29.91■■■□□ 2.38
SHROOM1-205ENST00000488072 ABCC8Q09428 1581 aa29.9■■■□□ 2.38
SHROOM1-205ENST00000488072 POLA1P09884 1462 aaPredicted RBP29.78■■■□□ 2.36
SHROOM1-205ENST00000488072 RAD54L2Q9Y4B4 1467 aa29.77■■■□□ 2.36
SHROOM1-205ENST00000488072 FGD5Q6ZNL6 1462 aa29.75■■■□□ 2.35
SHROOM1-205ENST00000488072 WRNQ14191 1432 aaPredicted RBP eCLIP29.75■■■□□ 2.35
SHROOM1-205ENST00000488072 SYNJ1O43426 1573 aa29.73■■■□□ 2.35
SHROOM1-205ENST00000488072 ZNF608Q9ULD9 1512 aaPredicted RBP29.71■■■□□ 2.35
SHROOM1-205ENST00000488072 IFT140Q96RY7 1462 aa29.68■■■□□ 2.34
SHROOM1-205ENST00000488072 SOGA1O94964 1423 aa29.67■■■□□ 2.34
SHROOM1-205ENST00000488072 TARBP1Q13395 1621 aaKnown RBP29.63■■■□□ 2.33
SHROOM1-205ENST00000488072 TOP2BQ02880 1626 aa29.6■■■□□ 2.33
SHROOM1-205ENST00000488072 AQRO60306 1485 aaKnown RBP eCLIP29.58■■■□□ 2.33
SHROOM1-205ENST00000488072 BIVM-ERCC5R4GMW8 1640 aa29.57■■■□□ 2.32
SHROOM1-205ENST00000488072 TDRD9Q8NDG6 1382 aaKnown RBP29.57■■■□□ 2.32
SHROOM1-205ENST00000488072 EIF4G3O43432 1585 aaKnown RBP29.47■■■□□ 2.31
SHROOM1-205ENST00000488072 ABCA10Q8WWZ4 1543 aa29.4■■■□□ 2.3
SHROOM1-205ENST00000488072 WDR97A6NE52 1622 aa29.39■■■□□ 2.3
SHROOM1-205ENST00000488072 GAPVD1Q14C86 1478 aa29.29■■■□□ 2.28
SHROOM1-205ENST00000488072 TRIM41Q8WV44 630 aa29.27■■■□□ 2.28
SHROOM1-205ENST00000488072 ABCA5Q8WWZ7 1642 aa29.26■■■□□ 2.27
SHROOM1-205ENST00000488072 SNAPC4Q5SXM2 1469 aa29.23■■■□□ 2.27
SHROOM1-205ENST00000488072 GRIN2BQ13224 1484 aa29.23■■■□□ 2.27
SHROOM1-205ENST00000488072 FBLN2P98095 1184 aa29.18■■■□□ 2.26
SHROOM1-205ENST00000488072 CHIC1Q5VXU3 224 aa29.17■■■□□ 2.26
SHROOM1-205ENST00000488072 PBRM1Q86U86 1689 aa29.15■■■□□ 2.26
SHROOM1-205ENST00000488072 RUSC2Q8N2Y8 1516 aa29.13■■■□□ 2.25
SHROOM1-205ENST00000488072 DNAJC5Q9H3Z4 198 aa29.12■■■□□ 2.25
SHROOM1-205ENST00000488072 KIF27Q86VH2 1401 aa29.07■■■□□ 2.24
SHROOM1-205ENST00000488072 MAGI1Q96QZ7 1491 aaPredicted RBP29.06■■■□□ 2.24
SHROOM1-205ENST00000488072 OSCARQ8IYS5 282 aa29.06■■■□□ 2.24
SHROOM1-205ENST00000488072 CHMP7Q8WUX9 453 aaPredicted RBP29.05■■■□□ 2.24
SHROOM1-205ENST00000488072 CHD1O14646 1710 aa29.05■■■□□ 2.24
SHROOM1-205ENST00000488072 IGF1RP08069 1367 aa29.03■■■□□ 2.24
SHROOM1-205ENST00000488072 SYNJ2O15056 1496 aa29■■■□□ 2.23
SHROOM1-205ENST00000488072 ERICH3Q5RHP9 1530 aa28.99■■■□□ 2.23
SHROOM1-205ENST00000488072 ADAMTS12P58397 1594 aa28.98■■■□□ 2.23
SHROOM1-205ENST00000488072 FHAD1B1AJZ9 1412 aa28.94■■■□□ 2.22
SHROOM1-205ENST00000488072 GRIN2AQ12879 1464 aa28.88■■■□□ 2.21
SHROOM1-205ENST00000488072 FAM9AQ8IZU1 332 aaPredicted RBP28.87■■■□□ 2.21
SHROOM1-205ENST00000488072 CARMIL1Q5VZK9 1371 aa28.83■■■□□ 2.21
SHROOM1-205ENST00000488072 CEP170Q5SW79 1584 aa28.77■■■□□ 2.2
SHROOM1-205ENST00000488072 CLASP1Q7Z460 1538 aa28.74■■■□□ 2.19
SHROOM1-205ENST00000488072 NUP160Q12769 1436 aa28.74■■■□□ 2.19
SHROOM1-205ENST00000488072 CUL7Q14999 1698 aa28.73■■■□□ 2.19
SHROOM1-205ENST00000488072 CSRNP3Q8WYN3 585 aa28.69■■■□□ 2.18
SHROOM1-205ENST00000488072 RAPGEF2Q9Y4G8 1499 aa28.63■■■□□ 2.17
SHROOM1-205ENST00000488072 PRXQ9BXM0 1461 aa28.61■■■□□ 2.17
SHROOM1-205ENST00000488072 ARHGEF11O15085 1522 aa28.6■■■□□ 2.17
SHROOM1-205ENST00000488072 EHMT2Q96KQ7 1210 aa28.59■■■□□ 2.17
SHROOM1-205ENST00000488072 RIMBP3CA6NJZ7 1639 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms