RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 NISCHQ9Y2I1 1504 aa24.58■■□□□ 1.53
HLA-DMB-261ENST00000487996 AEBP2Q6ZN18 517 aaPredicted RBP22.89■■□□□ 1.26
HLA-DMB-261ENST00000487996 CHIC1Q5VXU3 224 aa21.84■■□□□ 1.09
HLA-DMB-261ENST00000487996 CCDC180Q9P1Z9 1646 aa21.67■■□□□ 1.06
HLA-DMB-261ENST00000487996 ABCC9O60706 1549 aa20.65■□□□□ 0.9
HLA-DMB-261ENST00000487996 ZCCHC6Q5VYS8 1495 aaKnown RBP20.59■□□□□ 0.89
HLA-DMB-261ENST00000487996 DCAF1Q9Y4B6 1507 aa20.41■□□□□ 0.86
HLA-DMB-261ENST00000487996 DCAF8L2P0C7V8 631 aa20.33■□□□□ 0.84
HLA-DMB-261ENST00000487996 MYO15BQ96JP2 1530 aa20.32■□□□□ 0.84
HLA-DMB-261ENST00000487996 NACADO15069 1562 aa20.25■□□□□ 0.83
HLA-DMB-261ENST00000487996 RB1CC1Q8TDY2 1594 aa20.15■□□□□ 0.82
HLA-DMB-261ENST00000487996 SCRIBQ14160 1630 aa19.77■□□□□ 0.76
HLA-DMB-261ENST00000487996 SHROOM4Q9ULL8 1493 aa19.69■□□□□ 0.74
HLA-DMB-261ENST00000487996 UNC13AQ9UPW8 1703 aa19.65■□□□□ 0.74
HLA-DMB-261ENST00000487996 BICRAQ9NZM4 1560 aa19.45■□□□□ 0.7
HLA-DMB-261ENST00000487996 SENP3Q9H4L4 574 aaPredicted RBP19.42■□□□□ 0.7
HLA-DMB-261ENST00000487996 DNAJC5BQ9UF47 199 aa19.41■□□□□ 0.7
HLA-DMB-261ENST00000487996 PABPN1Q86U42 306 aaKnown RBP eCLIP19.36■□□□□ 0.69
HLA-DMB-261ENST00000487996 PHF23Q9BUL5 403 aaPredicted RBP19.23■□□□□ 0.67
HLA-DMB-261ENST00000487996 BAZ1AQ9NRL2 1556 aaPredicted RBP19.06■□□□□ 0.64
HLA-DMB-261ENST00000487996 CECR2Q9BXF3 1484 aa19.04■□□□□ 0.64
HLA-DMB-261ENST00000487996 SMARCA4P51532 1647 aa18.97■□□□□ 0.63
HLA-DMB-261ENST00000487996 EIF4G1Q04637 1599 aaKnown RBP18.93■□□□□ 0.62
HLA-DMB-261ENST00000487996 MROH2BQ7Z745 1585 aa18.93■□□□□ 0.62
HLA-DMB-261ENST00000487996 RSF1Q96T23 1441 aaPredicted RBP18.91■□□□□ 0.62
HLA-DMB-261ENST00000487996 SUPT5HO00267 1087 aaKnown RBP18.82■□□□□ 0.6
HLA-DMB-261ENST00000487996 PEG3Q9GZU2 1588 aa18.79■□□□□ 0.6
HLA-DMB-261ENST00000487996 SMARCA2P51531 1590 aa18.78■□□□□ 0.6
HLA-DMB-261ENST00000487996 WIZO95785 1651 aa18.75■□□□□ 0.59
HLA-DMB-261ENST00000487996 ATAD2BQ9ULI0 1458 aa18.73■□□□□ 0.59
HLA-DMB-261ENST00000487996 CC2D2AQ9P2K1 1620 aa18.72■□□□□ 0.59
HLA-DMB-261ENST00000487996 NCAPD3P42695 1498 aa18.66■□□□□ 0.58
HLA-DMB-261ENST00000487996 HMGXB3Q12766 1538 aa18.64■□□□□ 0.57
HLA-DMB-261ENST00000487996 BAZ1BQ9UIG0 1483 aaKnown RBP18.64■□□□□ 0.57
HLA-DMB-261ENST00000487996 TOP2AP11388 1531 aaKnown RBP18.62■□□□□ 0.57
HLA-DMB-261ENST00000487996 CCDC88BA6NC98 1476 aa18.37■□□□□ 0.53
HLA-DMB-261ENST00000487996 CADPSQ9ULU8 1353 aa18.15■□□□□ 0.5
HLA-DMB-261ENST00000487996 CFTRP13569 1480 aa18.15■□□□□ 0.5
HLA-DMB-261ENST00000487996 FOXD1Q16676 465 aa18.13■□□□□ 0.49
HLA-DMB-261ENST00000487996 LAMC3Q9Y6N6 1575 aa18.11■□□□□ 0.49
HLA-DMB-261ENST00000487996 PRDM2Q13029 1718 aa18.08■□□□□ 0.48
HLA-DMB-261ENST00000487996 NESP48681 1621 aa18■□□□□ 0.47
HLA-DMB-261ENST00000487996 PDS5BQ9NTI5 1447 aa17.98■□□□□ 0.47
HLA-DMB-261ENST00000487996 FANCD2Q9BXW9 1451 aa17.93■□□□□ 0.46
HLA-DMB-261ENST00000487996 CEP164Q9UPV0 1460 aa17.88■□□□□ 0.45
HLA-DMB-261ENST00000487996 WRNQ14191 1432 aaPredicted RBP eCLIP17.85■□□□□ 0.45
HLA-DMB-261ENST00000487996 ABCC8Q09428 1581 aa17.84■□□□□ 0.45
HLA-DMB-261ENST00000487996 KIF21AQ7Z4S6 1674 aa17.83■□□□□ 0.44
HLA-DMB-261ENST00000487996 ERCC6Q03468 1493 aa17.82■□□□□ 0.44
HLA-DMB-261ENST00000487996 DNAJC5Q9H3Z4 198 aa17.8■□□□□ 0.44
HLA-DMB-261ENST00000487996 TRIM41Q8WV44 630 aa17.78■□□□□ 0.44
HLA-DMB-261ENST00000487996 TOP2BQ02880 1626 aa17.75■□□□□ 0.43
HLA-DMB-261ENST00000487996 CUX2O14529 1486 aa17.75■□□□□ 0.43
HLA-DMB-261ENST00000487996 DNMBPQ6XZF7 1577 aa17.74■□□□□ 0.43
HLA-DMB-261ENST00000487996 BIVM-ERCC5R4GMW8 1640 aa17.74■□□□□ 0.43
HLA-DMB-261ENST00000487996 MRC2Q9UBG0 1479 aa17.74■□□□□ 0.43
HLA-DMB-261ENST00000487996 CUX1P39880 1505 aa17.74■□□□□ 0.43
HLA-DMB-261ENST00000487996 SYNJ1O43426 1573 aa17.73■□□□□ 0.43
HLA-DMB-261ENST00000487996 TOPBP1Q92547 1522 aa17.7■□□□□ 0.42
HLA-DMB-261ENST00000487996 URB2Q14146 1524 aaKnown RBP17.69■□□□□ 0.42
HLA-DMB-261ENST00000487996 WDR62O43379 1518 aa17.66■□□□□ 0.42
HLA-DMB-261ENST00000487996 THOC2Q8NI27 1593 aaKnown RBP17.65■□□□□ 0.42
HLA-DMB-261ENST00000487996 FGD5Q6ZNL6 1462 aa17.61■□□□□ 0.41
HLA-DMB-261ENST00000487996 POLA1P09884 1462 aaPredicted RBP17.58■□□□□ 0.4
HLA-DMB-261ENST00000487996 SOGA1O94964 1423 aa17.53■□□□□ 0.4
HLA-DMB-261ENST00000487996 EEA1Q15075 1411 aa17.5■□□□□ 0.39
HLA-DMB-261ENST00000487996 PLPPR3Q6T4P5 718 aa17.5■□□□□ 0.39
HLA-DMB-261ENST00000487996 ABCA10Q8WWZ4 1543 aa17.49■□□□□ 0.39
HLA-DMB-261ENST00000487996 IFT140Q96RY7 1462 aa17.49■□□□□ 0.39
HLA-DMB-261ENST00000487996 RAD54L2Q9Y4B4 1467 aa17.46■□□□□ 0.39
HLA-DMB-261ENST00000487996 KIF27Q86VH2 1401 aa17.46■□□□□ 0.39
HLA-DMB-261ENST00000487996 TARBP1Q13395 1621 aaKnown RBP17.45■□□□□ 0.38
HLA-DMB-261ENST00000487996 WDR97A6NE52 1622 aa17.44■□□□□ 0.38
HLA-DMB-261ENST00000487996 ABCA5Q8WWZ7 1642 aa17.36■□□□□ 0.37
HLA-DMB-261ENST00000487996 RUSC2Q8N2Y8 1516 aa17.35■□□□□ 0.37
HLA-DMB-261ENST00000487996 FAM9AQ8IZU1 332 aaPredicted RBP17.35■□□□□ 0.37
HLA-DMB-261ENST00000487996 GAPVD1Q14C86 1478 aa17.34■□□□□ 0.37
HLA-DMB-261ENST00000487996 CSRNP3Q8WYN3 585 aa17.34■□□□□ 0.37
HLA-DMB-261ENST00000487996 TDRD9Q8NDG6 1382 aaKnown RBP17.33■□□□□ 0.37
HLA-DMB-261ENST00000487996 ERICH3Q5RHP9 1530 aa17.3■□□□□ 0.36
HLA-DMB-261ENST00000487996 ZNF608Q9ULD9 1512 aaPredicted RBP17.3■□□□□ 0.36
HLA-DMB-261ENST00000487996 EIF4G3O43432 1585 aaKnown RBP17.29■□□□□ 0.36
HLA-DMB-261ENST00000487996 AQRO60306 1485 aaKnown RBP eCLIP17.28■□□□□ 0.36
HLA-DMB-261ENST00000487996 GRIN2BQ13224 1484 aa17.28■□□□□ 0.36
HLA-DMB-261ENST00000487996 IGF1RP08069 1367 aa17.27■□□□□ 0.36
HLA-DMB-261ENST00000487996 PBRM1Q86U86 1689 aa17.26■□□□□ 0.35
HLA-DMB-261ENST00000487996 CUL7Q14999 1698 aa17.26■□□□□ 0.35
HLA-DMB-261ENST00000487996 KIF21BO75037 1637 aa17.24■□□□□ 0.35
HLA-DMB-261ENST00000487996 PRXQ9BXM0 1461 aa17.22■□□□□ 0.35
HLA-DMB-261ENST00000487996 CARMIL1Q5VZK9 1371 aa17.2■□□□□ 0.34
HLA-DMB-261ENST00000487996 MAGI1Q96QZ7 1491 aaPredicted RBP17.19■□□□□ 0.34
HLA-DMB-261ENST00000487996 GOLGA3Q08378 1498 aa17.19■□□□□ 0.34
HLA-DMB-261ENST00000487996 RAPGEF2Q9Y4G8 1499 aa17.17■□□□□ 0.34
HLA-DMB-261ENST00000487996 FHAD1B1AJZ9 1412 aa17.17■□□□□ 0.34
HLA-DMB-261ENST00000487996 SNAPC4Q5SXM2 1469 aa17.15■□□□□ 0.34
HLA-DMB-261ENST00000487996 ADAMTS12P58397 1594 aa17.15■□□□□ 0.34
HLA-DMB-261ENST00000487996 PPP6R1Q9UPN7 881 aa17.12■□□□□ 0.33
HLA-DMB-261ENST00000487996 SYNJ2O15056 1496 aa17.1■□□□□ 0.33
HLA-DMB-261ENST00000487996 LOC105371045A0A1W2PR82 267 aa17.09■□□□□ 0.33
HLA-DMB-261ENST00000487996 UBTFP17480 764 aaKnown RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms