RNA–Protein interactions for RNA: ENST00000487645.1

COL4A6-207, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 3

Gene COL4A6, Length 812 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-207ENST00000487645 NISCHQ9Y2I1 1504 aa31.71■■■□□ 2.67
COL4A6-207ENST00000487645 CCDC180Q9P1Z9 1646 aa28.07■■■□□ 2.08
COL4A6-207ENST00000487645 ABCC9O60706 1549 aa27.08■■□□□ 1.93
COL4A6-207ENST00000487645 ZCCHC6Q5VYS8 1495 aaKnown RBP26.45■■□□□ 1.82
COL4A6-207ENST00000487645 DCAF8L2P0C7V8 631 aa26.35■■□□□ 1.81
COL4A6-207ENST00000487645 NACADO15069 1562 aa26.32■■□□□ 1.8
COL4A6-207ENST00000487645 MYO15BQ96JP2 1530 aa26.29■■□□□ 1.8
COL4A6-207ENST00000487645 DCAF1Q9Y4B6 1507 aa26.29■■□□□ 1.8
COL4A6-207ENST00000487645 RB1CC1Q8TDY2 1594 aa26.26■■□□□ 1.79
COL4A6-207ENST00000487645 UNC13AQ9UPW8 1703 aa25.7■■□□□ 1.7
COL4A6-207ENST00000487645 SCRIBQ14160 1630 aa25.57■■□□□ 1.68
COL4A6-207ENST00000487645 BICRAQ9NZM4 1560 aa25.43■■□□□ 1.66
COL4A6-207ENST00000487645 PABPN1Q86U42 306 aaKnown RBP eCLIP25.38■■□□□ 1.65
COL4A6-207ENST00000487645 SHROOM4Q9ULL8 1493 aa25.22■■□□□ 1.63
COL4A6-207ENST00000487645 EIF4G1Q04637 1599 aaKnown RBP24.73■■□□□ 1.55
COL4A6-207ENST00000487645 CECR2Q9BXF3 1484 aa24.63■■□□□ 1.53
COL4A6-207ENST00000487645 DNAJC5BQ9UF47 199 aa24.59■■□□□ 1.53
COL4A6-207ENST00000487645 BAZ1AQ9NRL2 1556 aaPredicted RBP24.56■■□□□ 1.52
COL4A6-207ENST00000487645 CC2D2AQ9P2K1 1620 aa24.55■■□□□ 1.52
COL4A6-207ENST00000487645 SMARCA4P51532 1647 aa24.53■■□□□ 1.52
COL4A6-207ENST00000487645 MROH2BQ7Z745 1585 aa24.42■■□□□ 1.5
COL4A6-207ENST00000487645 SMARCA2P51531 1590 aa24.32■■□□□ 1.48
COL4A6-207ENST00000487645 PEG3Q9GZU2 1588 aa24.31■■□□□ 1.48
COL4A6-207ENST00000487645 ATAD2BQ9ULI0 1458 aa24.31■■□□□ 1.48
COL4A6-207ENST00000487645 RSF1Q96T23 1441 aaPredicted RBP24.27■■□□□ 1.48
COL4A6-207ENST00000487645 NCAPD3P42695 1498 aa24.27■■□□□ 1.48
COL4A6-207ENST00000487645 WIZO95785 1651 aa24.19■■□□□ 1.46
COL4A6-207ENST00000487645 HMGXB3Q12766 1538 aa24.16■■□□□ 1.46
COL4A6-207ENST00000487645 BAZ1BQ9UIG0 1483 aaKnown RBP24.12■■□□□ 1.45
COL4A6-207ENST00000487645 TOP2AP11388 1531 aaKnown RBP23.94■■□□□ 1.42
COL4A6-207ENST00000487645 SUPT5HO00267 1087 aaKnown RBP23.89■■□□□ 1.41
COL4A6-207ENST00000487645 CCDC88BA6NC98 1476 aa23.68■■□□□ 1.38
COL4A6-207ENST00000487645 LAMC3Q9Y6N6 1575 aa23.59■■□□□ 1.37
COL4A6-207ENST00000487645 CADPSQ9ULU8 1353 aa23.58■■□□□ 1.37
COL4A6-207ENST00000487645 NESP48681 1621 aa23.53■■□□□ 1.36
COL4A6-207ENST00000487645 CFTRP13569 1480 aa23.5■■□□□ 1.35
COL4A6-207ENST00000487645 PDS5BQ9NTI5 1447 aa23.42■■□□□ 1.34
COL4A6-207ENST00000487645 PRDM2Q13029 1718 aa23.41■■□□□ 1.34
COL4A6-207ENST00000487645 ERCC6Q03468 1493 aa23.33■■□□□ 1.33
COL4A6-207ENST00000487645 KIF21AQ7Z4S6 1674 aa23.31■■□□□ 1.32
COL4A6-207ENST00000487645 FANCD2Q9BXW9 1451 aa23.29■■□□□ 1.32
COL4A6-207ENST00000487645 CEP164Q9UPV0 1460 aa23.23■■□□□ 1.31
COL4A6-207ENST00000487645 MRC2Q9UBG0 1479 aa23.12■■□□□ 1.29
COL4A6-207ENST00000487645 THOC2Q8NI27 1593 aaKnown RBP23.12■■□□□ 1.29
COL4A6-207ENST00000487645 ABCC8Q09428 1581 aa23.04■■□□□ 1.28
COL4A6-207ENST00000487645 WDR62O43379 1518 aa23.03■■□□□ 1.28
COL4A6-207ENST00000487645 URB2Q14146 1524 aaKnown RBP23.02■■□□□ 1.28
COL4A6-207ENST00000487645 CUX2O14529 1486 aa22.99■■□□□ 1.27
COL4A6-207ENST00000487645 DNMBPQ6XZF7 1577 aa22.96■■□□□ 1.27
COL4A6-207ENST00000487645 TOPBP1Q92547 1522 aa22.95■■□□□ 1.26
COL4A6-207ENST00000487645 CUX1P39880 1505 aa22.89■■□□□ 1.26
COL4A6-207ENST00000487645 WRNQ14191 1432 aaPredicted RBP eCLIP22.87■■□□□ 1.25
COL4A6-207ENST00000487645 TOP2BQ02880 1626 aa22.81■■□□□ 1.24
COL4A6-207ENST00000487645 BIVM-ERCC5R4GMW8 1640 aa22.81■■□□□ 1.24
COL4A6-207ENST00000487645 SYNJ1O43426 1573 aa22.78■■□□□ 1.24
COL4A6-207ENST00000487645 POLA1P09884 1462 aaPredicted RBP22.76■■□□□ 1.23
COL4A6-207ENST00000487645 FGD5Q6ZNL6 1462 aa22.75■■□□□ 1.23
COL4A6-207ENST00000487645 IFT140Q96RY7 1462 aa22.73■■□□□ 1.23
COL4A6-207ENST00000487645 SOGA1O94964 1423 aa22.72■■□□□ 1.23
COL4A6-207ENST00000487645 TARBP1Q13395 1621 aaKnown RBP22.69■■□□□ 1.22
COL4A6-207ENST00000487645 RAD54L2Q9Y4B4 1467 aa22.65■■□□□ 1.22
COL4A6-207ENST00000487645 TRIM41Q8WV44 630 aa22.59■■□□□ 1.21
COL4A6-207ENST00000487645 ABCA10Q8WWZ4 1543 aa22.58■■□□□ 1.21
COL4A6-207ENST00000487645 ZNF608Q9ULD9 1512 aaPredicted RBP22.57■■□□□ 1.2
COL4A6-207ENST00000487645 WDR97A6NE52 1622 aa22.57■■□□□ 1.2
COL4A6-207ENST00000487645 CHIC1Q5VXU3 224 aa22.52■■□□□ 1.2
COL4A6-207ENST00000487645 TDRD9Q8NDG6 1382 aaKnown RBP22.51■■□□□ 1.19
COL4A6-207ENST00000487645 EIF4G3O43432 1585 aaKnown RBP22.5■■□□□ 1.19
COL4A6-207ENST00000487645 AQRO60306 1485 aaKnown RBP eCLIP22.5■■□□□ 1.19
COL4A6-207ENST00000487645 GAPVD1Q14C86 1478 aa22.45■■□□□ 1.18
COL4A6-207ENST00000487645 ABCA5Q8WWZ7 1642 aa22.44■■□□□ 1.18
COL4A6-207ENST00000487645 GRIN2BQ13224 1484 aa22.4■■□□□ 1.18
COL4A6-207ENST00000487645 PBRM1Q86U86 1689 aa22.39■■□□□ 1.17
COL4A6-207ENST00000487645 KIF27Q86VH2 1401 aa22.39■■□□□ 1.17
COL4A6-207ENST00000487645 ERICH3Q5RHP9 1530 aa22.33■■□□□ 1.17
COL4A6-207ENST00000487645 MAGI1Q96QZ7 1491 aaPredicted RBP22.31■■□□□ 1.16
COL4A6-207ENST00000487645 SNAPC4Q5SXM2 1469 aa22.28■■□□□ 1.16
COL4A6-207ENST00000487645 IGF1RP08069 1367 aa22.27■■□□□ 1.16
COL4A6-207ENST00000487645 RUSC2Q8N2Y8 1516 aa22.25■■□□□ 1.15
COL4A6-207ENST00000487645 FHAD1B1AJZ9 1412 aa22.21■■□□□ 1.15
COL4A6-207ENST00000487645 EEA1Q15075 1411 aa22.21■■□□□ 1.15
COL4A6-207ENST00000487645 SYNJ2O15056 1496 aa22.21■■□□□ 1.15
COL4A6-207ENST00000487645 CHMP7Q8WUX9 453 aaPredicted RBP22.2■■□□□ 1.14
COL4A6-207ENST00000487645 CUL7Q14999 1698 aa22.2■■□□□ 1.14
COL4A6-207ENST00000487645 CHD1O14646 1710 aa22.2■■□□□ 1.14
COL4A6-207ENST00000487645 ADAMTS12P58397 1594 aa22.19■■□□□ 1.14
COL4A6-207ENST00000487645 FBLN2P98095 1184 aa22.18■■□□□ 1.14
COL4A6-207ENST00000487645 OSCARQ8IYS5 282 aa22.15■■□□□ 1.14
COL4A6-207ENST00000487645 CARMIL1Q5VZK9 1371 aa22.14■■□□□ 1.14
COL4A6-207ENST00000487645 CSRNP3Q8WYN3 585 aa22.14■■□□□ 1.13
COL4A6-207ENST00000487645 GRIN2AQ12879 1464 aa22.09■■□□□ 1.13
COL4A6-207ENST00000487645 FAM9AQ8IZU1 332 aaPredicted RBP22.06■■□□□ 1.12
COL4A6-207ENST00000487645 RAPGEF2Q9Y4G8 1499 aa22.04■■□□□ 1.12
COL4A6-207ENST00000487645 PRXQ9BXM0 1461 aa22.03■■□□□ 1.12
COL4A6-207ENST00000487645 NUP160Q12769 1436 aa21.99■■□□□ 1.11
COL4A6-207ENST00000487645 CEP170Q5SW79 1584 aa21.96■■□□□ 1.11
COL4A6-207ENST00000487645 DNAJC5Q9H3Z4 198 aa21.94■■□□□ 1.1
COL4A6-207ENST00000487645 CLASP1Q7Z460 1538 aa21.94■■□□□ 1.1
COL4A6-207ENST00000487645 KIF21BO75037 1637 aa21.92■■□□□ 1.1
COL4A6-207ENST00000487645 KIAA0586Q9BVV6 1533 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms