RNA–Protein interactions for RNA: ENST00000487194.1

VAMP3-203, Transcript of vesicle associated membrane protein 3, humanhuman

TSL 4

Gene VAMP3, Length 274 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-203ENST00000487194 NISCHQ9Y2I1 1504 aa13.95□□□□□ -0.18
VAMP3-203ENST00000487194 CCDC180Q9P1Z9 1646 aa12.2□□□□□ -0.46
VAMP3-203ENST00000487194 ZCCHC6Q5VYS8 1495 aaKnown RBP11.72□□□□□ -0.53
VAMP3-203ENST00000487194 DCAF1Q9Y4B6 1507 aa11.58□□□□□ -0.56
VAMP3-203ENST00000487194 DCAF8L2P0C7V8 631 aa11.51□□□□□ -0.57
VAMP3-203ENST00000487194 ABCC9O60706 1549 aa11.5□□□□□ -0.57
VAMP3-203ENST00000487194 MYO15BQ96JP2 1530 aa11.46□□□□□ -0.57
VAMP3-203ENST00000487194 NACADO15069 1562 aa11.38□□□□□ -0.59
VAMP3-203ENST00000487194 SHROOM4Q9ULL8 1493 aa11.3□□□□□ -0.6
VAMP3-203ENST00000487194 RB1CC1Q8TDY2 1594 aa11.28□□□□□ -0.6
VAMP3-203ENST00000487194 SCRIBQ14160 1630 aa11.16□□□□□ -0.62
VAMP3-203ENST00000487194 UNC13AQ9UPW8 1703 aa10.98□□□□□ -0.65
VAMP3-203ENST00000487194 SUPT5HO00267 1087 aaKnown RBP10.89□□□□□ -0.67
VAMP3-203ENST00000487194 BICRAQ9NZM4 1560 aa10.89□□□□□ -0.67
VAMP3-203ENST00000487194 PABPN1Q86U42 306 aaKnown RBP eCLIP10.84□□□□□ -0.67
VAMP3-203ENST00000487194 RSF1Q96T23 1441 aaPredicted RBP10.81□□□□□ -0.68
VAMP3-203ENST00000487194 CECR2Q9BXF3 1484 aa10.81□□□□□ -0.68
VAMP3-203ENST00000487194 BAZ1AQ9NRL2 1556 aaPredicted RBP10.8□□□□□ -0.68
VAMP3-203ENST00000487194 DNAJC5BQ9UF47 199 aa10.77□□□□□ -0.69
VAMP3-203ENST00000487194 MROH2BQ7Z745 1585 aa10.75□□□□□ -0.69
VAMP3-203ENST00000487194 SMARCA4P51532 1647 aa10.72□□□□□ -0.69
VAMP3-203ENST00000487194 DNAJC5Q9H3Z4 198 aa10.67□□□□□ -0.7
VAMP3-203ENST00000487194 WIZO95785 1651 aa10.65□□□□□ -0.7
VAMP3-203ENST00000487194 PEG3Q9GZU2 1588 aa10.62□□□□□ -0.71
VAMP3-203ENST00000487194 SMARCA2P51531 1590 aa10.59□□□□□ -0.71
VAMP3-203ENST00000487194 EIF4G1Q04637 1599 aaKnown RBP10.59□□□□□ -0.71
VAMP3-203ENST00000487194 TOP2AP11388 1531 aaKnown RBP10.58□□□□□ -0.72
VAMP3-203ENST00000487194 ATAD2BQ9ULI0 1458 aa10.56□□□□□ -0.72
VAMP3-203ENST00000487194 BAZ1BQ9UIG0 1483 aaKnown RBP10.51□□□□□ -0.73
VAMP3-203ENST00000487194 NCAPD3P42695 1498 aa10.49□□□□□ -0.73
VAMP3-203ENST00000487194 HMGXB3Q12766 1538 aa10.48□□□□□ -0.73
VAMP3-203ENST00000487194 CCDC88BA6NC98 1476 aa10.46□□□□□ -0.74
VAMP3-203ENST00000487194 CHIC1Q5VXU3 224 aa10.43□□□□□ -0.74
VAMP3-203ENST00000487194 CC2D2AQ9P2K1 1620 aa10.43□□□□□ -0.74
VAMP3-203ENST00000487194 TRIM41Q8WV44 630 aa10.29□□□□□ -0.76
VAMP3-203ENST00000487194 CFTRP13569 1480 aa10.24□□□□□ -0.77
VAMP3-203ENST00000487194 CADPSQ9ULU8 1353 aa10.23□□□□□ -0.77
VAMP3-203ENST00000487194 ABCC8Q09428 1581 aa10.19□□□□□ -0.78
VAMP3-203ENST00000487194 WRNQ14191 1432 aaPredicted RBP eCLIP10.19□□□□□ -0.78
VAMP3-203ENST00000487194 PRDM2Q13029 1718 aa10.18□□□□□ -0.78
VAMP3-203ENST00000487194 LAMC3Q9Y6N6 1575 aa10.14□□□□□ -0.79
VAMP3-203ENST00000487194 SYNJ1O43426 1573 aa10.1□□□□□ -0.79
VAMP3-203ENST00000487194 TOP2BQ02880 1626 aa10.1□□□□□ -0.79
VAMP3-203ENST00000487194 FANCD2Q9BXW9 1451 aa10.1□□□□□ -0.79
VAMP3-203ENST00000487194 BIVM-ERCC5R4GMW8 1640 aa10.09□□□□□ -0.79
VAMP3-203ENST00000487194 EEA1Q15075 1411 aa10.08□□□□□ -0.8
VAMP3-203ENST00000487194 PDS5BQ9NTI5 1447 aa10.08□□□□□ -0.8
VAMP3-203ENST00000487194 NESP48681 1621 aa10.07□□□□□ -0.8
VAMP3-203ENST00000487194 CUX1P39880 1505 aa10.06□□□□□ -0.8
VAMP3-203ENST00000487194 CEP164Q9UPV0 1460 aa10.04□□□□□ -0.8
VAMP3-203ENST00000487194 FAM9AQ8IZU1 332 aaPredicted RBP10.04□□□□□ -0.8
VAMP3-203ENST00000487194 SOGA1O94964 1423 aa10.01□□□□□ -0.81
VAMP3-203ENST00000487194 DNMBPQ6XZF7 1577 aa10.01□□□□□ -0.81
VAMP3-203ENST00000487194 LOC105371045A0A1W2PR82 267 aa9.99□□□□□ -0.81
VAMP3-203ENST00000487194 CSRNP3Q8WYN3 585 aa9.99□□□□□ -0.81
VAMP3-203ENST00000487194 TOPBP1Q92547 1522 aa9.98□□□□□ -0.81
VAMP3-203ENST00000487194 FGD5Q6ZNL6 1462 aa9.97□□□□□ -0.81
VAMP3-203ENST00000487194 KIF21AQ7Z4S6 1674 aa9.96□□□□□ -0.81
VAMP3-203ENST00000487194 KIF27Q86VH2 1401 aa9.96□□□□□ -0.82
VAMP3-203ENST00000487194 RUSC2Q8N2Y8 1516 aa9.96□□□□□ -0.82
VAMP3-203ENST00000487194 URB2Q14146 1524 aaKnown RBP9.95□□□□□ -0.82
VAMP3-203ENST00000487194 MRC2Q9UBG0 1479 aa9.93□□□□□ -0.82
VAMP3-203ENST00000487194 POLA1P09884 1462 aaPredicted RBP9.92□□□□□ -0.82
VAMP3-203ENST00000487194 CUX2O14529 1486 aa9.91□□□□□ -0.82
VAMP3-203ENST00000487194 ERCC6Q03468 1493 aa9.91□□□□□ -0.82
VAMP3-203ENST00000487194 GOLGA3Q08378 1498 aa9.91□□□□□ -0.82
VAMP3-203ENST00000487194 KIF21BO75037 1637 aa9.9□□□□□ -0.82
VAMP3-203ENST00000487194 ABCA10Q8WWZ4 1543 aa9.9□□□□□ -0.82
VAMP3-203ENST00000487194 WDR62O43379 1518 aa9.87□□□□□ -0.83
VAMP3-203ENST00000487194 RAD54L2Q9Y4B4 1467 aa9.87□□□□□ -0.83
VAMP3-203ENST00000487194 TNIKQ9UKE5 1360 aa9.87□□□□□ -0.83
VAMP3-203ENST00000487194 PRXQ9BXM0 1461 aa9.86□□□□□ -0.83
VAMP3-203ENST00000487194 EHMT2Q96KQ7 1210 aa9.86□□□□□ -0.83
VAMP3-203ENST00000487194 ERICH3Q5RHP9 1530 aa9.86□□□□□ -0.83
VAMP3-203ENST00000487194 UBTFP17480 764 aaKnown RBP9.85□□□□□ -0.83
VAMP3-203ENST00000487194 IGF1RP08069 1367 aa9.85□□□□□ -0.83
VAMP3-203ENST00000487194 WDR97A6NE52 1622 aa9.83□□□□□ -0.84
VAMP3-203ENST00000487194 THOC2Q8NI27 1593 aaKnown RBP9.83□□□□□ -0.84
VAMP3-203ENST00000487194 IFT140Q96RY7 1462 aa9.82□□□□□ -0.84
VAMP3-203ENST00000487194 RAPGEF2Q9Y4G8 1499 aa9.82□□□□□ -0.84
VAMP3-203ENST00000487194 TARBP1Q13395 1621 aaKnown RBP9.82□□□□□ -0.84
VAMP3-203ENST00000487194 CARMIL1Q5VZK9 1371 aa9.8□□□□□ -0.84
VAMP3-203ENST00000487194 ABCA5Q8WWZ7 1642 aa9.8□□□□□ -0.84
VAMP3-203ENST00000487194 GAPVD1Q14C86 1478 aa9.79□□□□□ -0.84
VAMP3-203ENST00000487194 TDRD9Q8NDG6 1382 aaKnown RBP9.79□□□□□ -0.84
VAMP3-203ENST00000487194 CUL7Q14999 1698 aa9.79□□□□□ -0.84
VAMP3-203ENST00000487194 CEP162Q5TB80 1403 aa9.79□□□□□ -0.84
VAMP3-203ENST00000487194 GRIN2BQ13224 1484 aa9.74□□□□□ -0.85
VAMP3-203ENST00000487194 CLIP1P30622 1438 aa9.73□□□□□ -0.85
VAMP3-203ENST00000487194 AQRO60306 1485 aaKnown RBP eCLIP9.72□□□□□ -0.854e-7■■■■■ 32
VAMP3-203ENST00000487194 PBRM1Q86U86 1689 aa9.72□□□□□ -0.85
VAMP3-203ENST00000487194 FHAD1B1AJZ9 1412 aa9.71□□□□□ -0.86
VAMP3-203ENST00000487194 ZNF608Q9ULD9 1512 aaPredicted RBP9.71□□□□□ -0.86
VAMP3-203ENST00000487194 EIF4G3O43432 1585 aaKnown RBP9.69□□□□□ -0.86
VAMP3-203ENST00000487194 ADAMTS12P58397 1594 aa9.68□□□□□ -0.86
VAMP3-203ENST00000487194 MAGI1Q96QZ7 1491 aaPredicted RBP9.66□□□□□ -0.86
VAMP3-203ENST00000487194 SNAPC4Q5SXM2 1469 aa9.65□□□□□ -0.87
VAMP3-203ENST00000487194 VPS8Q8N3P4 1428 aa9.65□□□□□ -0.87
VAMP3-203ENST00000487194 CTTNBP2Q8WZ74 1663 aa9.64□□□□□ -0.87
VAMP3-203ENST00000487194 RANGAP1P46060 587 aaPredicted RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms