RNA–Protein interactions for RNA: ENST00000487172.1

PCOLCE-208, Transcript of procollagen C-endopeptidase enhancer, humanhuman

TSL 2

Gene PCOLCE, Length 686 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCOLCE-208ENST00000487172 NISCHQ9Y2I1 1504 aa46.31■■■■■ 5
PCOLCE-208ENST00000487172 CCDC180Q9P1Z9 1646 aa40.98■■■■■ 4.15
PCOLCE-208ENST00000487172 ABCC9O60706 1549 aa39.6■■■■□ 3.93
PCOLCE-208ENST00000487172 ZCCHC6Q5VYS8 1495 aaKnown RBP38.66■■■■□ 3.78
PCOLCE-208ENST00000487172 NACADO15069 1562 aa38.44■■■■□ 3.74
PCOLCE-208ENST00000487172 DCAF8L2P0C7V8 631 aa38.44■■■■□ 3.74
PCOLCE-208ENST00000487172 MYO15BQ96JP2 1530 aa38.4■■■■□ 3.74
PCOLCE-208ENST00000487172 DCAF1Q9Y4B6 1507 aa38.38■■■■□ 3.74
PCOLCE-208ENST00000487172 RB1CC1Q8TDY2 1594 aa38.35■■■■□ 3.73
PCOLCE-208ENST00000487172 UNC13AQ9UPW8 1703 aa37.47■■■■□ 3.59
PCOLCE-208ENST00000487172 SCRIBQ14160 1630 aa37.34■■■■□ 3.57
PCOLCE-208ENST00000487172 BICRAQ9NZM4 1560 aa37.17■■■■□ 3.54
PCOLCE-208ENST00000487172 PABPN1Q86U42 306 aaKnown RBP eCLIP37.08■■■■□ 3.53
PCOLCE-208ENST00000487172 SHROOM4Q9ULL8 1493 aa36.87■■■■□ 3.49
PCOLCE-208ENST00000487172 EIF4G1Q04637 1599 aaKnown RBP36.15■■■■□ 3.38
PCOLCE-208ENST00000487172 CECR2Q9BXF3 1484 aa35.99■■■■□ 3.35
PCOLCE-208ENST00000487172 DNAJC5BQ9UF47 199 aa35.98■■■■□ 3.35
PCOLCE-208ENST00000487172 CC2D2AQ9P2K1 1620 aa35.87■■■■□ 3.33
PCOLCE-208ENST00000487172 BAZ1AQ9NRL2 1556 aaPredicted RBP35.86■■■■□ 3.33
PCOLCE-208ENST00000487172 SMARCA4P51532 1647 aa35.82■■■■□ 3.32
PCOLCE-208ENST00000487172 MROH2BQ7Z745 1585 aa35.67■■■■□ 3.3
PCOLCE-208ENST00000487172 ATAD2BQ9ULI0 1458 aa35.53■■■■□ 3.28
PCOLCE-208ENST00000487172 PEG3Q9GZU2 1588 aa35.51■■■■□ 3.28
PCOLCE-208ENST00000487172 SMARCA2P51531 1590 aa35.51■■■■□ 3.27
PCOLCE-208ENST00000487172 NCAPD3P42695 1498 aa35.48■■■■□ 3.27
PCOLCE-208ENST00000487172 RSF1Q96T23 1441 aaPredicted RBP35.44■■■■□ 3.26
PCOLCE-208ENST00000487172 HMGXB3Q12766 1538 aa35.32■■■■□ 3.24
PCOLCE-208ENST00000487172 WIZO95785 1651 aa35.3■■■■□ 3.24
PCOLCE-208ENST00000487172 BAZ1BQ9UIG0 1483 aaKnown RBP35.23■■■■□ 3.23
PCOLCE-208ENST00000487172 TOP2AP11388 1531 aaKnown RBP34.97■■■■□ 3.19
PCOLCE-208ENST00000487172 SUPT5HO00267 1087 aaKnown RBP34.82■■■■□ 3.16
PCOLCE-208ENST00000487172 CCDC88BA6NC98 1476 aa34.56■■■■□ 3.12
PCOLCE-208ENST00000487172 CADPSQ9ULU8 1353 aa34.45■■■■□ 3.11
PCOLCE-208ENST00000487172 LAMC3Q9Y6N6 1575 aa34.45■■■■□ 3.1
PCOLCE-208ENST00000487172 NESP48681 1621 aa34.41■■■■□ 3.1
PCOLCE-208ENST00000487172 CFTRP13569 1480 aa34.34■■■■□ 3.09
PCOLCE-208ENST00000487172 PDS5BQ9NTI5 1447 aa34.2■■■■□ 3.06
PCOLCE-208ENST00000487172 PRDM2Q13029 1718 aa34.1■■■■□ 3.05
PCOLCE-208ENST00000487172 ERCC6Q03468 1493 aa34.09■■■■□ 3.05
PCOLCE-208ENST00000487172 KIF21AQ7Z4S6 1674 aa34.02■■■■□ 3.04
PCOLCE-208ENST00000487172 FANCD2Q9BXW9 1451 aa34.01■■■■□ 3.04
PCOLCE-208ENST00000487172 CEP164Q9UPV0 1460 aa33.93■■■■□ 3.02
PCOLCE-208ENST00000487172 THOC2Q8NI27 1593 aaKnown RBP33.81■■■■□ 3
PCOLCE-208ENST00000487172 MRC2Q9UBG0 1479 aa33.8■■■■□ 3
PCOLCE-208ENST00000487172 WDR62O43379 1518 aa33.69■■■□□ 2.98
PCOLCE-208ENST00000487172 URB2Q14146 1524 aaKnown RBP33.64■■■□□ 2.98
PCOLCE-208ENST00000487172 CUX2O14529 1486 aa33.64■■■□□ 2.98
PCOLCE-208ENST00000487172 ABCC8Q09428 1581 aa33.61■■■□□ 2.97
PCOLCE-208ENST00000487172 TOPBP1Q92547 1522 aa33.53■■■□□ 2.96
PCOLCE-208ENST00000487172 DNMBPQ6XZF7 1577 aa33.53■■■□□ 2.96
PCOLCE-208ENST00000487172 CUX1P39880 1505 aa33.43■■■□□ 2.94
PCOLCE-208ENST00000487172 WRNQ14191 1432 aaPredicted RBP eCLIP33.39■■■□□ 2.94
PCOLCE-208ENST00000487172 TOP2BQ02880 1626 aa33.28■■■□□ 2.92
PCOLCE-208ENST00000487172 POLA1P09884 1462 aaPredicted RBP33.28■■■□□ 2.92
PCOLCE-208ENST00000487172 BIVM-ERCC5R4GMW8 1640 aa33.28■■■□□ 2.92
PCOLCE-208ENST00000487172 SYNJ1O43426 1573 aa33.26■■■□□ 2.92
PCOLCE-208ENST00000487172 FGD5Q6ZNL6 1462 aa33.25■■■□□ 2.91
PCOLCE-208ENST00000487172 IFT140Q96RY7 1462 aa33.22■■■□□ 2.91
PCOLCE-208ENST00000487172 SOGA1O94964 1423 aa33.16■■■□□ 2.9
PCOLCE-208ENST00000487172 TARBP1Q13395 1621 aaKnown RBP33.13■■■□□ 2.89
PCOLCE-208ENST00000487172 RAD54L2Q9Y4B4 1467 aa33.11■■■□□ 2.89
PCOLCE-208ENST00000487172 ZNF608Q9ULD9 1512 aaPredicted RBP32.99■■■□□ 2.87
PCOLCE-208ENST00000487172 ABCA10Q8WWZ4 1543 aa32.97■■■□□ 2.87
PCOLCE-208ENST00000487172 WDR97A6NE52 1622 aa32.97■■■□□ 2.87
PCOLCE-208ENST00000487172 TRIM41Q8WV44 630 aa32.91■■■□□ 2.86
PCOLCE-208ENST00000487172 TDRD9Q8NDG6 1382 aaKnown RBP32.89■■■□□ 2.86
PCOLCE-208ENST00000487172 EIF4G3O43432 1585 aaKnown RBP32.88■■■□□ 2.85
PCOLCE-208ENST00000487172 AQRO60306 1485 aaKnown RBP eCLIP32.87■■■□□ 2.858e-7■■■□□ 16.1
PCOLCE-208ENST00000487172 CHIC1Q5VXU3 224 aa32.82■■■□□ 2.84
PCOLCE-208ENST00000487172 ABCA5Q8WWZ7 1642 aa32.79■■■□□ 2.84
PCOLCE-208ENST00000487172 GAPVD1Q14C86 1478 aa32.78■■■□□ 2.84
PCOLCE-208ENST00000487172 GRIN2BQ13224 1484 aa32.72■■■□□ 2.83
PCOLCE-208ENST00000487172 KIF27Q86VH2 1401 aa32.68■■■□□ 2.82
PCOLCE-208ENST00000487172 PBRM1Q86U86 1689 aa32.66■■■□□ 2.82
PCOLCE-208ENST00000487172 ERICH3Q5RHP9 1530 aa32.6■■■□□ 2.81
PCOLCE-208ENST00000487172 MAGI1Q96QZ7 1491 aaPredicted RBP32.59■■■□□ 2.81
PCOLCE-208ENST00000487172 SNAPC4Q5SXM2 1469 aa32.57■■■□□ 2.8
PCOLCE-208ENST00000487172 IGF1RP08069 1367 aa32.5■■■□□ 2.79
PCOLCE-208ENST00000487172 RUSC2Q8N2Y8 1516 aa32.49■■■□□ 2.79
PCOLCE-208ENST00000487172 SYNJ2O15056 1496 aa32.45■■■□□ 2.79
PCOLCE-208ENST00000487172 ADAMTS12P58397 1594 aa32.43■■■□□ 2.78
PCOLCE-208ENST00000487172 FHAD1B1AJZ9 1412 aa32.43■■■□□ 2.78
PCOLCE-208ENST00000487172 CHMP7Q8WUX9 453 aaPredicted RBP32.4■■■□□ 2.78
PCOLCE-208ENST00000487172 CHD1O14646 1710 aa32.38■■■□□ 2.77
PCOLCE-208ENST00000487172 EEA1Q15075 1411 aa32.38■■■□□ 2.77
PCOLCE-208ENST00000487172 CUL7Q14999 1698 aa32.37■■■□□ 2.77
PCOLCE-208ENST00000487172 FBLN2P98095 1184 aa32.36■■■□□ 2.77
PCOLCE-208ENST00000487172 OSCARQ8IYS5 282 aa32.34■■■□□ 2.77
PCOLCE-208ENST00000487172 CARMIL1Q5VZK9 1371 aa32.32■■■□□ 2.76
PCOLCE-208ENST00000487172 GRIN2AQ12879 1464 aa32.29■■■□□ 2.76
PCOLCE-208ENST00000487172 CSRNP3Q8WYN3 585 aa32.26■■■□□ 2.75
PCOLCE-208ENST00000487172 PRXQ9BXM0 1461 aa32.17■■■□□ 2.74
PCOLCE-208ENST00000487172 RAPGEF2Q9Y4G8 1499 aa32.16■■■□□ 2.74
PCOLCE-208ENST00000487172 FAM9AQ8IZU1 332 aaPredicted RBP32.16■■■□□ 2.74
PCOLCE-208ENST00000487172 NUP160Q12769 1436 aa32.16■■■□□ 2.74
PCOLCE-208ENST00000487172 DNAJC5Q9H3Z4 198 aa32.1■■■□□ 2.73
PCOLCE-208ENST00000487172 CEP170Q5SW79 1584 aa32.09■■■□□ 2.73
PCOLCE-208ENST00000487172 CLASP1Q7Z460 1538 aa32.07■■■□□ 2.72
PCOLCE-208ENST00000487172 KIF21BO75037 1637 aa31.97■■■□□ 2.71
PCOLCE-208ENST00000487172 KIAA0586Q9BVV6 1533 aa31.95■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms