RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 AEBP2Q6ZN18 517 aaPredicted RBP20.34■□□□□ 0.85
VPS50-218ENST00000485994 CHIC1Q5VXU3 224 aa18.78■□□□□ 0.6
VPS50-218ENST00000485994 NISCHQ9Y2I1 1504 aa17.21■□□□□ 0.35
VPS50-218ENST00000485994 SENP3Q9H4L4 574 aaPredicted RBP17.18■□□□□ 0.34
VPS50-218ENST00000485994 PHF23Q9BUL5 403 aaPredicted RBP17.02■□□□□ 0.32
VPS50-218ENST00000485994 FOXD1Q16676 465 aa16.22■□□□□ 0.19
VPS50-218ENST00000485994 POTEDQ86YR6 584 aa15.64■□□□□ 0.09
VPS50-218ENST00000485994 CCDC180Q9P1Z9 1646 aa15.35■□□□□ 0.05
VPS50-218ENST00000485994 MSH5O43196 834 aa15.13■□□□□ 0.01
VPS50-218ENST00000485994 ABCC9O60706 1549 aa15.07■□□□□ 0
VPS50-218ENST00000485994 PIAS4Q8N2W9 510 aaPredicted RBP15.02■□□□□ -0
VPS50-218ENST00000485994 PPP6R1Q9UPN7 881 aa14.95□□□□□ -0.02
VPS50-218ENST00000485994 ADRA2BP18089 450 aa14.86□□□□□ -0.03
VPS50-218ENST00000485994 PLPPR3Q6T4P5 718 aa14.74□□□□□ -0.05
VPS50-218ENST00000485994 RB1CC1Q8TDY2 1594 aa14.51□□□□□ -0.09
VPS50-218ENST00000485994 NACADO15069 1562 aa14.49□□□□□ -0.09
VPS50-218ENST00000485994 MYO15BQ96JP2 1530 aa14.44□□□□□ -0.1
VPS50-218ENST00000485994 DCAF8L2P0C7V8 631 aa14.39□□□□□ -0.11
VPS50-218ENST00000485994 DCAF1Q9Y4B6 1507 aa14.3□□□□□ -0.12
VPS50-218ENST00000485994 ZCCHC6Q5VYS8 1495 aaKnown RBP14.28□□□□□ -0.12
VPS50-218ENST00000485994 UNC13AQ9UPW8 1703 aa14.15□□□□□ -0.14
VPS50-218ENST00000485994 PABPN1Q86U42 306 aaKnown RBP eCLIP14.1□□□□□ -0.15
VPS50-218ENST00000485994 BICRAQ9NZM4 1560 aa14.07□□□□□ -0.16
VPS50-218ENST00000485994 DNAJC5BQ9UF47 199 aa14.05□□□□□ -0.16
VPS50-218ENST00000485994 SHROOM4Q9ULL8 1493 aa13.99□□□□□ -0.17
VPS50-218ENST00000485994 SCRIBQ14160 1630 aa13.89□□□□□ -0.19
VPS50-218ENST00000485994 MAPK8IP2Q13387 824 aaPredicted RBP13.82□□□□□ -0.2
VPS50-218ENST00000485994 EIF4G1Q04637 1599 aaKnown RBP13.69□□□□□ -0.22
VPS50-218ENST00000485994 CC2D2AQ9P2K1 1620 aa13.66□□□□□ -0.22
VPS50-218ENST00000485994 CECR2Q9BXF3 1484 aa13.61□□□□□ -0.23
VPS50-218ENST00000485994 DMRT2Q9Y5R5 561 aa13.6□□□□□ -0.23
VPS50-218ENST00000485994 NCAPD3P42695 1498 aa13.41□□□□□ -0.26
VPS50-218ENST00000485994 CACNB1Q02641 598 aaPredicted RBP13.36□□□□□ -0.27
VPS50-218ENST00000485994 ATAD2BQ9ULI0 1458 aa13.35□□□□□ -0.27
VPS50-218ENST00000485994 SMARCA4P51532 1647 aa13.35□□□□□ -0.27
VPS50-218ENST00000485994 BAZ1AQ9NRL2 1556 aaPredicted RBP13.34□□□□□ -0.27
VPS50-218ENST00000485994 SMARCA2P51531 1590 aa13.32□□□□□ -0.28
VPS50-218ENST00000485994 SCAF1Q9H7N4 1312 aaKnown RBP13.3□□□□□ -0.28
VPS50-218ENST00000485994 PEG3Q9GZU2 1588 aa13.28□□□□□ -0.28
VPS50-218ENST00000485994 HMGXB3Q12766 1538 aa13.28□□□□□ -0.28
VPS50-218ENST00000485994 MROH2BQ7Z745 1585 aa13.23□□□□□ -0.29
VPS50-218ENST00000485994 BAZ1BQ9UIG0 1483 aaKnown RBP13.19□□□□□ -0.3
VPS50-218ENST00000485994 DCAF8L1A6NGE4 600 aa13.17□□□□□ -0.3
VPS50-218ENST00000485994 RSF1Q96T23 1441 aaPredicted RBP13.07□□□□□ -0.32
VPS50-218ENST00000485994 WIZO95785 1651 aa13.05□□□□□ -0.32
VPS50-218ENST00000485994 LAMC3Q9Y6N6 1575 aa13.03□□□□□ -0.32
VPS50-218ENST00000485994 NESP48681 1621 aa13.02□□□□□ -0.33
VPS50-218ENST00000485994 ERCC6Q03468 1493 aa13.01□□□□□ -0.33
VPS50-218ENST00000485994 CADPSQ9ULU8 1353 aa13□□□□□ -0.33
VPS50-218ENST00000485994 CUX2O14529 1486 aa12.99□□□□□ -0.33
VPS50-218ENST00000485994 RNF39Q9H2S5 420 aa12.98□□□□□ -0.33
VPS50-218ENST00000485994 PDS5BQ9NTI5 1447 aa12.97□□□□□ -0.33
VPS50-218ENST00000485994 PPP4R3CPQ6ZMV5 832 aa12.97□□□□□ -0.33
VPS50-218ENST00000485994 HOXD11P31277 338 aaPredicted RBP12.94□□□□□ -0.34
VPS50-218ENST00000485994 TOP2AP11388 1531 aaKnown RBP12.93□□□□□ -0.34
VPS50-218ENST00000485994 CFTRP13569 1480 aa12.88□□□□□ -0.35
VPS50-218ENST00000485994 KIF21AQ7Z4S6 1674 aa12.84□□□□□ -0.35
VPS50-218ENST00000485994 THOC2Q8NI27 1593 aaKnown RBP12.84□□□□□ -0.35
VPS50-218ENST00000485994 CCDC88BA6NC98 1476 aa12.81□□□□□ -0.36
VPS50-218ENST00000485994 DNAJC5Q9H3Z4 198 aa12.81□□□□□ -0.36
VPS50-218ENST00000485994 FANCD2Q9BXW9 1451 aa12.78□□□□□ -0.36
VPS50-218ENST00000485994 MRC2Q9UBG0 1479 aa12.78□□□□□ -0.36
VPS50-218ENST00000485994 CEP164Q9UPV0 1460 aa12.77□□□□□ -0.37
VPS50-218ENST00000485994 WDR62O43379 1518 aa12.75□□□□□ -0.37
VPS50-218ENST00000485994 CNKSR2Q8WXI2 1034 aa12.73□□□□□ -0.37
VPS50-218ENST00000485994 PRDM2Q13029 1718 aa12.71□□□□□ -0.37
VPS50-218ENST00000485994 RNF216Q9NWF9 866 aaPredicted RBP12.71□□□□□ -0.37
VPS50-218ENST00000485994 C1QBPQ07021 282 aaKnown RBP12.67□□□□□ -0.38
VPS50-218ENST00000485994 URB2Q14146 1524 aaKnown RBP12.66□□□□□ -0.38
VPS50-218ENST00000485994 ABCC8Q09428 1581 aa12.64□□□□□ -0.39
VPS50-218ENST00000485994 SUPT5HO00267 1087 aaKnown RBP12.58□□□□□ -0.4
VPS50-218ENST00000485994 TOPBP1Q92547 1522 aa12.57□□□□□ -0.4
VPS50-218ENST00000485994 IFT140Q96RY7 1462 aa12.55□□□□□ -0.4
VPS50-218ENST00000485994 DNMBPQ6XZF7 1577 aa12.54□□□□□ -0.4
VPS50-218ENST00000485994 OSCARQ8IYS5 282 aa12.49□□□□□ -0.41
VPS50-218ENST00000485994 ZNF608Q9ULD9 1512 aaPredicted RBP12.46□□□□□ -0.42
VPS50-218ENST00000485994 POLA1P09884 1462 aaPredicted RBP12.45□□□□□ -0.42
VPS50-218ENST00000485994 TARBP1Q13395 1621 aaKnown RBP12.44□□□□□ -0.42
VPS50-218ENST00000485994 SOGA1O94964 1423 aa12.44□□□□□ -0.42
VPS50-218ENST00000485994 CUX1P39880 1505 aa12.41□□□□□ -0.42
VPS50-218ENST00000485994 AQRO60306 1485 aaKnown RBP eCLIP12.4□□□□□ -0.43
VPS50-218ENST00000485994 WDR97A6NE52 1622 aa12.39□□□□□ -0.43
VPS50-218ENST00000485994 FGD5Q6ZNL6 1462 aa12.38□□□□□ -0.43
VPS50-218ENST00000485994 RAD54L2Q9Y4B4 1467 aa12.38□□□□□ -0.43
VPS50-218ENST00000485994 EIF4G3O43432 1585 aaKnown RBP12.36□□□□□ -0.43
VPS50-218ENST00000485994 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS50-218ENST00000485994 TDRD9Q8NDG6 1382 aaKnown RBP12.35□□□□□ -0.43
VPS50-218ENST00000485994 ABCA10Q8WWZ4 1543 aa12.31□□□□□ -0.44
VPS50-218ENST00000485994 WRNQ14191 1432 aaPredicted RBP eCLIP12.3□□□□□ -0.44
VPS50-218ENST00000485994 TOP2BQ02880 1626 aa12.29□□□□□ -0.44
VPS50-218ENST00000485994 GRIN2BQ13224 1484 aa12.29□□□□□ -0.44
VPS50-218ENST00000485994 BIVM-ERCC5R4GMW8 1640 aa12.28□□□□□ -0.44
VPS50-218ENST00000485994 MAGI1Q96QZ7 1491 aaPredicted RBP12.27□□□□□ -0.44
VPS50-218ENST00000485994 GAPVD1Q14C86 1478 aa12.27□□□□□ -0.45
VPS50-218ENST00000485994 CHMP7Q8WUX9 453 aaPredicted RBP12.26□□□□□ -0.45
VPS50-218ENST00000485994 FBLN2P98095 1184 aa12.25□□□□□ -0.45
VPS50-218ENST00000485994 CHD1O14646 1710 aa12.24□□□□□ -0.45
VPS50-218ENST00000485994 SNAPC4Q5SXM2 1469 aa12.24□□□□□ -0.45
VPS50-218ENST00000485994 SYNJ1O43426 1573 aa12.22□□□□□ -0.45
VPS50-218ENST00000485994 SYNJ2O15056 1496 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms