RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 DNAJC5BQ9UF47 199 aa12.17□□□□□ -0.46
COL17A1-206ENST00000483876 ABCC9O60706 1549 aa12.14□□□□□ -0.47
COL17A1-206ENST00000483876 NISCHQ9Y2I1 1504 aa12.14□□□□□ -0.47
COL17A1-206ENST00000483876 DNAJC5Q9H3Z4 198 aa11.81□□□□□ -0.52
COL17A1-206ENST00000483876 CCDC180Q9P1Z9 1646 aa11.2□□□□□ -0.62
COL17A1-206ENST00000483876 PABPN1Q86U42 306 aaKnown RBP eCLIP11.2□□□□□ -0.62
COL17A1-206ENST00000483876 RB1CC1Q8TDY2 1594 aa11.13□□□□□ -0.63
COL17A1-206ENST00000483876 CECR2Q9BXF3 1484 aa11.02□□□□□ -0.65
COL17A1-206ENST00000483876 TRIM41Q8WV44 630 aa10.97□□□□□ -0.65
COL17A1-206ENST00000483876 CC2D2AQ9P2K1 1620 aa10.87□□□□□ -0.67
COL17A1-206ENST00000483876 NACADO15069 1562 aa10.84□□□□□ -0.67
COL17A1-206ENST00000483876 BICRAQ9NZM4 1560 aa10.82□□□□□ -0.68
COL17A1-206ENST00000483876 CUX2O14529 1486 aa10.8□□□□□ -0.68
COL17A1-206ENST00000483876 UNC13AQ9UPW8 1703 aa10.77□□□□□ -0.69
COL17A1-206ENST00000483876 DCAF8L2P0C7V8 631 aa10.73□□□□□ -0.69
COL17A1-206ENST00000483876 EIF4G1Q04637 1599 aaKnown RBP10.65□□□□□ -0.71
COL17A1-206ENST00000483876 SHROOM4Q9ULL8 1493 aa10.6□□□□□ -0.71
COL17A1-206ENST00000483876 AEBP2Q6ZN18 517 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-206ENST00000483876 ERCC6Q03468 1493 aa10.55□□□□□ -0.72
COL17A1-206ENST00000483876 MYO15BQ96JP2 1530 aa10.4□□□□□ -0.74
COL17A1-206ENST00000483876 ILDR1Q86SU0 546 aaPredicted RBP10.29□□□□□ -0.76
COL17A1-206ENST00000483876 SCRIBQ14160 1630 aa10.26□□□□□ -0.77
COL17A1-206ENST00000483876 TRHP20396 242 aaPredicted RBP10.24□□□□□ -0.77
COL17A1-206ENST00000483876 OSCARQ8IYS5 282 aa10.22□□□□□ -0.77
COL17A1-206ENST00000483876 THOC2Q8NI27 1593 aaKnown RBP10.18□□□□□ -0.78
COL17A1-206ENST00000483876 NESP48681 1621 aa10.17□□□□□ -0.78
COL17A1-206ENST00000483876 BAZ1AQ9NRL2 1556 aaPredicted RBP10.11□□□□□ -0.79
COL17A1-206ENST00000483876 ZCCHC6Q5VYS8 1495 aaKnown RBP10.1□□□□□ -0.79
COL17A1-206ENST00000483876 RIMBP3CA6NJZ7 1639 aa10.09□□□□□ -0.79
COL17A1-206ENST00000483876 RIMBP3BA6NNM3 1639 aa10.09□□□□□ -0.79
COL17A1-206ENST00000483876 RIMBP3Q9UFD9 1639 aa10.09□□□□□ -0.79
COL17A1-206ENST00000483876 SMARCA2P51531 1590 aa10.08□□□□□ -0.8
COL17A1-206ENST00000483876 NCAPD3P42695 1498 aa10.05□□□□□ -0.8
COL17A1-206ENST00000483876 CYB5RLQ6IPT4 315 aa10.05□□□□□ -0.8
COL17A1-206ENST00000483876 DCAF1Q9Y4B6 1507 aa10.02□□□□□ -0.81
COL17A1-206ENST00000483876 ARHGEF11O15085 1522 aa10□□□□□ -0.81
COL17A1-206ENST00000483876 PDS5BQ9NTI5 1447 aa9.95□□□□□ -0.82
COL17A1-206ENST00000483876 KIF21AQ7Z4S6 1674 aa9.93□□□□□ -0.82
COL17A1-206ENST00000483876 LAMC3Q9Y6N6 1575 aa9.93□□□□□ -0.82
COL17A1-206ENST00000483876 MRC2Q9UBG0 1479 aa9.9□□□□□ -0.83
COL17A1-206ENST00000483876 ATAD2BQ9ULI0 1458 aa9.89□□□□□ -0.83
COL17A1-206ENST00000483876 WDR62O43379 1518 aa9.87□□□□□ -0.83
COL17A1-206ENST00000483876 HMGXB3Q12766 1538 aa9.86□□□□□ -0.83
COL17A1-206ENST00000483876 ARAP1Q96P48 1450 aa9.84□□□□□ -0.83
COL17A1-206ENST00000483876 BAZ1BQ9UIG0 1483 aaKnown RBP9.76□□□□□ -0.85
COL17A1-206ENST00000483876 CADPSQ9ULU8 1353 aa9.72□□□□□ -0.85
COL17A1-206ENST00000483876 CHIC1Q5VXU3 224 aa9.7□□□□□ -0.86
COL17A1-206ENST00000483876 LMTK3Q96Q04 1460 aa9.7□□□□□ -0.86
COL17A1-206ENST00000483876 KDM4FA0A1W2PPD8 638 aa9.69□□□□□ -0.86
COL17A1-206ENST00000483876 FBXO41Q8TF61 875 aa9.69□□□□□ -0.86
COL17A1-206ENST00000483876 CEP164Q9UPV0 1460 aa9.68□□□□□ -0.86
COL17A1-206ENST00000483876 RSF1Q96T23 1441 aaPredicted RBP9.68□□□□□ -0.86
COL17A1-206ENST00000483876 SOCS7O14512 581 aa9.67□□□□□ -0.86
COL17A1-206ENST00000483876 SMARCA4P51532 1647 aa9.63□□□□□ -0.87
COL17A1-206ENST00000483876 FANCD2Q9BXW9 1451 aa9.6□□□□□ -0.87
COL17A1-206ENST00000483876 ZNF608Q9ULD9 1512 aaPredicted RBP9.59□□□□□ -0.87
COL17A1-206ENST00000483876 ERCC6L2Q5T890 1561 aa9.58□□□□□ -0.88
COL17A1-206ENST00000483876 FBLN2P98095 1184 aa9.58□□□□□ -0.88
COL17A1-206ENST00000483876 ILDR2Q71H61 639 aa9.57□□□□□ -0.88
COL17A1-206ENST00000483876 URB2Q14146 1524 aaKnown RBP9.56□□□□□ -0.88
COL17A1-206ENST00000483876 PEG3Q9GZU2 1588 aa9.54□□□□□ -0.88
COL17A1-206ENST00000483876 IFT140Q96RY7 1462 aa9.53□□□□□ -0.88
COL17A1-206ENST00000483876 CHD1O14646 1710 aa9.51□□□□□ -0.89
COL17A1-206ENST00000483876 HECW2Q9P2P5 1572 aa9.51□□□□□ -0.89
COL17A1-206ENST00000483876 DISP3Q9P2K9 1392 aa9.48□□□□□ -0.89
COL17A1-206ENST00000483876 EIF4G3O43432 1585 aaKnown RBP9.46□□□□□ -0.89
COL17A1-206ENST00000483876 SUPT5HO00267 1087 aaKnown RBP9.46□□□□□ -0.9
COL17A1-206ENST00000483876 GAPVD1Q14C86 1478 aa9.45□□□□□ -0.9
COL17A1-206ENST00000483876 CLASP1Q7Z460 1538 aa9.43□□□□□ -0.9
COL17A1-206ENST00000483876 SYNJ2O15056 1496 aa9.43□□□□□ -0.9
COL17A1-206ENST00000483876 AQRO60306 1485 aaKnown RBP eCLIP9.42□□□□□ -0.9
COL17A1-206ENST00000483876 CFTRP13569 1480 aa9.41□□□□□ -0.9
COL17A1-206ENST00000483876 ADGRL1O94910 1474 aa9.38□□□□□ -0.91
COL17A1-206ENST00000483876 FAM69CQ0P6D2 419 aa9.36□□□□□ -0.91
COL17A1-206ENST00000483876 CHMP7Q8WUX9 453 aaPredicted RBP9.36□□□□□ -0.91
COL17A1-206ENST00000483876 SYNJ1O43426 1573 aa9.36□□□□□ -0.91
COL17A1-206ENST00000483876 MROH2BQ7Z745 1585 aa9.36□□□□□ -0.91
COL17A1-206ENST00000483876 KDM6BO15054 1643 aa9.35□□□□□ -0.91
COL17A1-206ENST00000483876 KIF13AQ9H1H9 1805 aa9.35□□□□□ -0.91
COL17A1-206ENST00000483876 TOPBP1Q92547 1522 aa9.31□□□□□ -0.92
COL17A1-206ENST00000483876 ABCC10Q5T3U5 1492 aa9.28□□□□□ -0.92
COL17A1-206ENST00000483876 SNAPC4Q5SXM2 1469 aa9.28□□□□□ -0.92
COL17A1-206ENST00000483876 TARBP1Q13395 1621 aaKnown RBP9.26□□□□□ -0.93
COL17A1-206ENST00000483876 ABCC8Q09428 1581 aa9.24□□□□□ -0.93
COL17A1-206ENST00000483876 TDRD9Q8NDG6 1382 aaKnown RBP9.24□□□□□ -0.93
COL17A1-206ENST00000483876 SPATA31D1Q6ZQQ2 1576 aa9.23□□□□□ -0.93
COL17A1-206ENST00000483876 MAGI1Q96QZ7 1491 aaPredicted RBP9.21□□□□□ -0.94
COL17A1-206ENST00000483876 NPM1P06748 294 aaKnown RBP eCLIP9.2□□□□□ -0.94
COL17A1-206ENST00000483876 DIP2BQ9P265 1576 aa9.19□□□□□ -0.94
COL17A1-206ENST00000483876 DNMBPQ6XZF7 1577 aa9.18□□□□□ -0.94
COL17A1-206ENST00000483876 CERKQ8TCT0 537 aa9.17□□□□□ -0.94
COL17A1-206ENST00000483876 WIZO95785 1651 aa9.16□□□□□ -0.94
COL17A1-206ENST00000483876 POLA1P09884 1462 aaPredicted RBP9.16□□□□□ -0.94
COL17A1-206ENST00000483876 RAD54L2Q9Y4B4 1467 aa9.16□□□□□ -0.94
COL17A1-206ENST00000483876 MAPKBP1O60336 1514 aa9.14□□□□□ -0.95
COL17A1-206ENST00000483876 GRIN2BQ13224 1484 aa9.14□□□□□ -0.95
COL17A1-206ENST00000483876 SOGA1O94964 1423 aa9.14□□□□□ -0.95
COL17A1-206ENST00000483876 CEP170Q5SW79 1584 aa9.12□□□□□ -0.95
COL17A1-206ENST00000483876 TSPOAP1O95153 1857 aa9.12□□□□□ -0.95
COL17A1-206ENST00000483876 PRDM2Q13029 1718 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms