RNA–Protein interactions for RNA: ENST00000483656.5

HDAC6-226, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 585 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-226ENST00000483656 NISCHQ9Y2I1 1504 aa23.31■■□□□ 1.32
HDAC6-226ENST00000483656 CCDC180Q9P1Z9 1646 aa20.35■□□□□ 0.85
HDAC6-226ENST00000483656 ZCCHC6Q5VYS8 1495 aaKnown RBP19.55■□□□□ 0.72
HDAC6-226ENST00000483656 ABCC9O60706 1549 aa19.4■□□□□ 0.7
HDAC6-226ENST00000483656 DCAF1Q9Y4B6 1507 aa19.28■□□□□ 0.68
HDAC6-226ENST00000483656 DCAF8L2P0C7V8 631 aa19.24■□□□□ 0.67
HDAC6-226ENST00000483656 MYO15BQ96JP2 1530 aa19.1■□□□□ 0.65
HDAC6-226ENST00000483656 NACADO15069 1562 aa19■□□□□ 0.63
HDAC6-226ENST00000483656 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
HDAC6-226ENST00000483656 RB1CC1Q8TDY2 1594 aa18.85■□□□□ 0.61
HDAC6-226ENST00000483656 SCRIBQ14160 1630 aa18.71■□□□□ 0.58
HDAC6-226ENST00000483656 UNC13AQ9UPW8 1703 aa18.49■□□□□ 0.55
HDAC6-226ENST00000483656 BICRAQ9NZM4 1560 aa18.36■□□□□ 0.53
HDAC6-226ENST00000483656 PABPN1Q86U42 306 aaKnown RBP eCLIP18.28■□□□□ 0.52
HDAC6-226ENST00000483656 DNAJC5BQ9UF47 199 aa18.19■□□□□ 0.5
HDAC6-226ENST00000483656 CECR2Q9BXF3 1484 aa18.15■□□□□ 0.5
HDAC6-226ENST00000483656 SUPT5HO00267 1087 aaKnown RBP18.1■□□□□ 0.49
HDAC6-226ENST00000483656 RSF1Q96T23 1441 aaPredicted RBP18.05■□□□□ 0.48
HDAC6-226ENST00000483656 MROH2BQ7Z745 1585 aa18.02■□□□□ 0.48
HDAC6-226ENST00000483656 BAZ1AQ9NRL2 1556 aaPredicted RBP17.98■□□□□ 0.47
HDAC6-226ENST00000483656 SMARCA4P51532 1647 aa17.94■□□□□ 0.46
HDAC6-226ENST00000483656 WIZO95785 1651 aa17.84■□□□□ 0.45
HDAC6-226ENST00000483656 EIF4G1Q04637 1599 aaKnown RBP17.78■□□□□ 0.44
HDAC6-226ENST00000483656 PEG3Q9GZU2 1588 aa17.74■□□□□ 0.43
HDAC6-226ENST00000483656 ATAD2BQ9ULI0 1458 aa17.69■□□□□ 0.42
HDAC6-226ENST00000483656 TOP2AP11388 1531 aaKnown RBP17.65■□□□□ 0.42
HDAC6-226ENST00000483656 SMARCA2P51531 1590 aa17.64■□□□□ 0.41
HDAC6-226ENST00000483656 NCAPD3P42695 1498 aa17.57■□□□□ 0.4
HDAC6-226ENST00000483656 BAZ1BQ9UIG0 1483 aaKnown RBP17.55■□□□□ 0.4
HDAC6-226ENST00000483656 CC2D2AQ9P2K1 1620 aa17.54■□□□□ 0.4
HDAC6-226ENST00000483656 DNAJC5Q9H3Z4 198 aa17.51■□□□□ 0.39
HDAC6-226ENST00000483656 HMGXB3Q12766 1538 aa17.51■□□□□ 0.39
HDAC6-226ENST00000483656 CCDC88BA6NC98 1476 aa17.49■□□□□ 0.39
HDAC6-226ENST00000483656 CHIC1Q5VXU3 224 aa17.31■□□□□ 0.36
HDAC6-226ENST00000483656 CFTRP13569 1480 aa17.13■□□□□ 0.33
HDAC6-226ENST00000483656 CADPSQ9ULU8 1353 aa17.1■□□□□ 0.33
HDAC6-226ENST00000483656 ABCC8Q09428 1581 aa17.06■□□□□ 0.32
HDAC6-226ENST00000483656 TRIM41Q8WV44 630 aa17.02■□□□□ 0.32
HDAC6-226ENST00000483656 NESP48681 1621 aa17■□□□□ 0.31
HDAC6-226ENST00000483656 PRDM2Q13029 1718 aa16.98■□□□□ 0.31
HDAC6-226ENST00000483656 LAMC3Q9Y6N6 1575 aa16.96■□□□□ 0.31
HDAC6-226ENST00000483656 WRNQ14191 1432 aaPredicted RBP eCLIP16.96■□□□□ 0.3
HDAC6-226ENST00000483656 SYNJ1O43426 1573 aa16.91■□□□□ 0.3
HDAC6-226ENST00000483656 FANCD2Q9BXW9 1451 aa16.9■□□□□ 0.3
HDAC6-226ENST00000483656 CUX1P39880 1505 aa16.86■□□□□ 0.29
HDAC6-226ENST00000483656 TOP2BQ02880 1626 aa16.84■□□□□ 0.29
HDAC6-226ENST00000483656 PDS5BQ9NTI5 1447 aa16.83■□□□□ 0.28
HDAC6-226ENST00000483656 BIVM-ERCC5R4GMW8 1640 aa16.82■□□□□ 0.28
HDAC6-226ENST00000483656 CEP164Q9UPV0 1460 aa16.79■□□□□ 0.28
HDAC6-226ENST00000483656 KIF21AQ7Z4S6 1674 aa16.76■□□□□ 0.27
HDAC6-226ENST00000483656 SOGA1O94964 1423 aa16.73■□□□□ 0.27
HDAC6-226ENST00000483656 URB2Q14146 1524 aaKnown RBP16.72■□□□□ 0.27
HDAC6-226ENST00000483656 FAM9AQ8IZU1 332 aaPredicted RBP16.72■□□□□ 0.27
HDAC6-226ENST00000483656 DNMBPQ6XZF7 1577 aa16.72■□□□□ 0.27
HDAC6-226ENST00000483656 TOPBP1Q92547 1522 aa16.7■□□□□ 0.26
HDAC6-226ENST00000483656 RUSC2Q8N2Y8 1516 aa16.7■□□□□ 0.26
HDAC6-226ENST00000483656 FGD5Q6ZNL6 1462 aa16.67■□□□□ 0.26
HDAC6-226ENST00000483656 MRC2Q9UBG0 1479 aa16.64■□□□□ 0.25
HDAC6-226ENST00000483656 LOC105371045A0A1W2PR82 267 aa16.63■□□□□ 0.25
HDAC6-226ENST00000483656 EEA1Q15075 1411 aa16.62■□□□□ 0.25
HDAC6-226ENST00000483656 POLA1P09884 1462 aaPredicted RBP16.61■□□□□ 0.25
HDAC6-226ENST00000483656 ERCC6Q03468 1493 aa16.6■□□□□ 0.25
HDAC6-226ENST00000483656 CSRNP3Q8WYN3 585 aa16.58■□□□□ 0.24
HDAC6-226ENST00000483656 RAD54L2Q9Y4B4 1467 aa16.58■□□□□ 0.24
HDAC6-226ENST00000483656 WDR62O43379 1518 aa16.56■□□□□ 0.24
HDAC6-226ENST00000483656 THOC2Q8NI27 1593 aaKnown RBP16.55■□□□□ 0.24
HDAC6-226ENST00000483656 ABCA10Q8WWZ4 1543 aa16.53■□□□□ 0.24
HDAC6-226ENST00000483656 CUX2O14529 1486 aa16.53■□□□□ 0.24
HDAC6-226ENST00000483656 KIF27Q86VH2 1401 aa16.53■□□□□ 0.24
HDAC6-226ENST00000483656 WDR97A6NE52 1622 aa16.48■□□□□ 0.23
HDAC6-226ENST00000483656 TARBP1Q13395 1621 aaKnown RBP16.48■□□□□ 0.23
HDAC6-226ENST00000483656 EHMT2Q96KQ7 1210 aa16.47■□□□□ 0.23
HDAC6-226ENST00000483656 IGF1RP08069 1367 aa16.45■□□□□ 0.22
HDAC6-226ENST00000483656 KIF21BO75037 1637 aa16.43■□□□□ 0.22
HDAC6-226ENST00000483656 PRXQ9BXM0 1461 aa16.42■□□□□ 0.22
HDAC6-226ENST00000483656 IFT140Q96RY7 1462 aa16.42■□□□□ 0.22
HDAC6-226ENST00000483656 TDRD9Q8NDG6 1382 aaKnown RBP16.41■□□□□ 0.22
HDAC6-226ENST00000483656 ABCA5Q8WWZ7 1642 aa16.4■□□□□ 0.22
HDAC6-226ENST00000483656 GOLGA3Q08378 1498 aa16.39■□□□□ 0.21
HDAC6-226ENST00000483656 RAPGEF2Q9Y4G8 1499 aa16.38■□□□□ 0.21
HDAC6-226ENST00000483656 GAPVD1Q14C86 1478 aa16.36■□□□□ 0.21
HDAC6-226ENST00000483656 ZNF608Q9ULD9 1512 aaPredicted RBP16.35■□□□□ 0.21
HDAC6-226ENST00000483656 ERICH3Q5RHP9 1530 aa16.35■□□□□ 0.21
HDAC6-226ENST00000483656 TNIKQ9UKE5 1360 aa16.34■□□□□ 0.21
HDAC6-226ENST00000483656 AQRO60306 1485 aaKnown RBP eCLIP16.34■□□□□ 0.211e-14■■■■■ 33.6
HDAC6-226ENST00000483656 CARMIL1Q5VZK9 1371 aa16.33■□□□□ 0.2
HDAC6-226ENST00000483656 UBTFP17480 764 aaKnown RBP16.31■□□□□ 0.2
HDAC6-226ENST00000483656 CUL7Q14999 1698 aa16.27■□□□□ 0.19
HDAC6-226ENST00000483656 GRIN2BQ13224 1484 aa16.26■□□□□ 0.19
HDAC6-226ENST00000483656 PBRM1Q86U86 1689 aa16.26■□□□□ 0.19
HDAC6-226ENST00000483656 EIF4G3O43432 1585 aaKnown RBP16.26■□□□□ 0.19
HDAC6-226ENST00000483656 CEP162Q5TB80 1403 aa16.22■□□□□ 0.19
HDAC6-226ENST00000483656 ADAMTS12P58397 1594 aa16.19■□□□□ 0.18
HDAC6-226ENST00000483656 FHAD1B1AJZ9 1412 aa16.19■□□□□ 0.18
HDAC6-226ENST00000483656 SNAPC4Q5SXM2 1469 aa16.17■□□□□ 0.18
HDAC6-226ENST00000483656 CLIP1P30622 1438 aa16.13■□□□□ 0.17
HDAC6-226ENST00000483656 MAGI1Q96QZ7 1491 aaPredicted RBP16.13■□□□□ 0.17
HDAC6-226ENST00000483656 RANGAP1P46060 587 aaPredicted RBP16.08■□□□□ 0.16
HDAC6-226ENST00000483656 SYNJ2O15056 1496 aa16.07■□□□□ 0.16
HDAC6-226ENST00000483656 GRIN2AQ12879 1464 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms