RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 NISCHQ9Y2I1 1504 aa19.38■□□□□ 0.69
USP4-210ENST00000483212 AEBP2Q6ZN18 517 aaPredicted RBP18.58■□□□□ 0.56
USP4-210ENST00000483212 CHIC1Q5VXU3 224 aa17.23■□□□□ 0.35
USP4-210ENST00000483212 POTEDQ86YR6 584 aa17.07■□□□□ 0.32
USP4-210ENST00000483212 CCDC180Q9P1Z9 1646 aa17.03■□□□□ 0.32
USP4-210ENST00000483212 ZCCHC6Q5VYS8 1495 aaKnown RBP16.26■□□□□ 0.19
USP4-210ENST00000483212 ABCC9O60706 1549 aa16.22■□□□□ 0.19
USP4-210ENST00000483212 DCAF1Q9Y4B6 1507 aa16.07■□□□□ 0.16
USP4-210ENST00000483212 SENP3Q9H4L4 574 aaPredicted RBP16.03■□□□□ 0.16
USP4-210ENST00000483212 MYO15BQ96JP2 1530 aa15.98■□□□□ 0.15
USP4-210ENST00000483212 NACADO15069 1562 aa15.89■□□□□ 0.13
USP4-210ENST00000483212 DCAF8L2P0C7V8 631 aa15.88■□□□□ 0.13
USP4-210ENST00000483212 RB1CC1Q8TDY2 1594 aa15.79■□□□□ 0.12
USP4-210ENST00000483212 PHF23Q9BUL5 403 aaPredicted RBP15.64■□□□□ 0.09
USP4-210ENST00000483212 SCRIBQ14160 1630 aa15.57■□□□□ 0.08
USP4-210ENST00000483212 SHROOM4Q9ULL8 1493 aa15.53■□□□□ 0.08
USP4-210ENST00000483212 UNC13AQ9UPW8 1703 aa15.47■□□□□ 0.07
USP4-210ENST00000483212 BICRAQ9NZM4 1560 aa15.36■□□□□ 0.05
USP4-210ENST00000483212 PABPN1Q86U42 306 aaKnown RBP eCLIP15.21■□□□□ 0.03
USP4-210ENST00000483212 FOXD1Q16676 465 aa15.17■□□□□ 0.02
USP4-210ENST00000483212 CECR2Q9BXF3 1484 aa15.07■□□□□ 0
USP4-210ENST00000483212 BAZ1AQ9NRL2 1556 aaPredicted RBP14.98□□□□□ -0.01
USP4-210ENST00000483212 MROH2BQ7Z745 1585 aa14.96□□□□□ -0.01
USP4-210ENST00000483212 RSF1Q96T23 1441 aaPredicted RBP14.94□□□□□ -0.02
USP4-210ENST00000483212 SMARCA4P51532 1647 aa14.94□□□□□ -0.02
USP4-210ENST00000483212 EIF4G1Q04637 1599 aaKnown RBP14.89□□□□□ -0.03
USP4-210ENST00000483212 PEG3Q9GZU2 1588 aa14.81□□□□□ -0.04
USP4-210ENST00000483212 WIZO95785 1651 aa14.81□□□□□ -0.04
USP4-210ENST00000483212 SUPT5HO00267 1087 aaKnown RBP14.8□□□□□ -0.04
USP4-210ENST00000483212 ATAD2BQ9ULI0 1458 aa14.76□□□□□ -0.05
USP4-210ENST00000483212 MSH5O43196 834 aa14.75□□□□□ -0.05
USP4-210ENST00000483212 SMARCA2P51531 1590 aa14.72□□□□□ -0.05
USP4-210ENST00000483212 CC2D2AQ9P2K1 1620 aa14.7□□□□□ -0.06
USP4-210ENST00000483212 NCAPD3P42695 1498 aa14.68□□□□□ -0.06
USP4-210ENST00000483212 TOP2AP11388 1531 aaKnown RBP14.67□□□□□ -0.06
USP4-210ENST00000483212 HMGXB3Q12766 1538 aa14.65□□□□□ -0.06
USP4-210ENST00000483212 BAZ1BQ9UIG0 1483 aaKnown RBP14.62□□□□□ -0.07
USP4-210ENST00000483212 DNAJC5BQ9UF47 199 aa14.52□□□□□ -0.09
USP4-210ENST00000483212 CCDC88BA6NC98 1476 aa14.5□□□□□ -0.09
USP4-210ENST00000483212 CFTRP13569 1480 aa14.28□□□□□ -0.12
USP4-210ENST00000483212 CADPSQ9ULU8 1353 aa14.25□□□□□ -0.13
USP4-210ENST00000483212 LAMC3Q9Y6N6 1575 aa14.2□□□□□ -0.14
USP4-210ENST00000483212 NESP48681 1621 aa14.19□□□□□ -0.14
USP4-210ENST00000483212 PRDM2Q13029 1718 aa14.18□□□□□ -0.14
USP4-210ENST00000483212 ABCC8Q09428 1581 aa14.1□□□□□ -0.15
USP4-210ENST00000483212 FANCD2Q9BXW9 1451 aa14.09□□□□□ -0.15
USP4-210ENST00000483212 PDS5BQ9NTI5 1447 aa14.06□□□□□ -0.16
USP4-210ENST00000483212 WRNQ14191 1432 aaPredicted RBP eCLIP14.04□□□□□ -0.16
USP4-210ENST00000483212 SYNJ1O43426 1573 aa14.03□□□□□ -0.16
USP4-210ENST00000483212 KIF21AQ7Z4S6 1674 aa14.01□□□□□ -0.17
USP4-210ENST00000483212 CEP164Q9UPV0 1460 aa14.01□□□□□ -0.17
USP4-210ENST00000483212 CUX1P39880 1505 aa14□□□□□ -0.17
USP4-210ENST00000483212 TOP2BQ02880 1626 aa13.99□□□□□ -0.17
USP4-210ENST00000483212 BIVM-ERCC5R4GMW8 1640 aa13.99□□□□□ -0.17
USP4-210ENST00000483212 URB2Q14146 1524 aaKnown RBP13.95□□□□□ -0.18
USP4-210ENST00000483212 TRIM41Q8WV44 630 aa13.95□□□□□ -0.18
USP4-210ENST00000483212 DNMBPQ6XZF7 1577 aa13.94□□□□□ -0.18
USP4-210ENST00000483212 TOPBP1Q92547 1522 aa13.93□□□□□ -0.18
USP4-210ENST00000483212 MRC2Q9UBG0 1479 aa13.92□□□□□ -0.18
USP4-210ENST00000483212 THOC2Q8NI27 1593 aaKnown RBP13.9□□□□□ -0.18
USP4-210ENST00000483212 ERCC6Q03468 1493 aa13.89□□□□□ -0.19
USP4-210ENST00000483212 WDR62O43379 1518 aa13.89□□□□□ -0.19
USP4-210ENST00000483212 FGD5Q6ZNL6 1462 aa13.87□□□□□ -0.19
USP4-210ENST00000483212 POLA1P09884 1462 aaPredicted RBP13.85□□□□□ -0.19
USP4-210ENST00000483212 SOGA1O94964 1423 aa13.79□□□□□ -0.2
USP4-210ENST00000483212 CUX2O14529 1486 aa13.79□□□□□ -0.2
USP4-210ENST00000483212 RAD54L2Q9Y4B4 1467 aa13.78□□□□□ -0.2
USP4-210ENST00000483212 RUSC2Q8N2Y8 1516 aa13.77□□□□□ -0.21
USP4-210ENST00000483212 WDR97A6NE52 1622 aa13.76□□□□□ -0.21
USP4-210ENST00000483212 TARBP1Q13395 1621 aaKnown RBP13.76□□□□□ -0.21
USP4-210ENST00000483212 ABCA10Q8WWZ4 1543 aa13.76□□□□□ -0.21
USP4-210ENST00000483212 EEA1Q15075 1411 aa13.73□□□□□ -0.21
USP4-210ENST00000483212 IFT140Q96RY7 1462 aa13.72□□□□□ -0.21
USP4-210ENST00000483212 ABCA5Q8WWZ7 1642 aa13.69□□□□□ -0.22
USP4-210ENST00000483212 PIAS4Q8N2W9 510 aaPredicted RBP13.69□□□□□ -0.22
USP4-210ENST00000483212 KIF27Q86VH2 1401 aa13.69□□□□□ -0.22
USP4-210ENST00000483212 FAM9AQ8IZU1 332 aaPredicted RBP13.66□□□□□ -0.22
USP4-210ENST00000483212 ZNF608Q9ULD9 1512 aaPredicted RBP13.64□□□□□ -0.23
USP4-210ENST00000483212 TDRD9Q8NDG6 1382 aaKnown RBP13.63□□□□□ -0.23
USP4-210ENST00000483212 CSRNP3Q8WYN3 585 aa13.63□□□□□ -0.23
USP4-210ENST00000483212 IGF1RP08069 1367 aa13.62□□□□□ -0.23
USP4-210ENST00000483212 GAPVD1Q14C86 1478 aa13.61□□□□□ -0.23
USP4-210ENST00000483212 PRXQ9BXM0 1461 aa13.61□□□□□ -0.23
USP4-210ENST00000483212 EIF4G3O43432 1585 aaKnown RBP13.6□□□□□ -0.23
USP4-210ENST00000483212 AQRO60306 1485 aaKnown RBP eCLIP13.6□□□□□ -0.23
USP4-210ENST00000483212 ERICH3Q5RHP9 1530 aa13.59□□□□□ -0.23
USP4-210ENST00000483212 KIF21BO75037 1637 aa13.59□□□□□ -0.23
USP4-210ENST00000483212 PBRM1Q86U86 1689 aa13.56□□□□□ -0.24
USP4-210ENST00000483212 GRIN2BQ13224 1484 aa13.55□□□□□ -0.24
USP4-210ENST00000483212 CACNB1Q02641 598 aaPredicted RBP13.55□□□□□ -0.24
USP4-210ENST00000483212 CUL7Q14999 1698 aa13.54□□□□□ -0.24
USP4-210ENST00000483212 LOC105371045A0A1W2PR82 267 aa13.53□□□□□ -0.24
USP4-210ENST00000483212 RAPGEF2Q9Y4G8 1499 aa13.53□□□□□ -0.24
USP4-210ENST00000483212 GOLGA3Q08378 1498 aa13.52□□□□□ -0.25
USP4-210ENST00000483212 ADAMTS12P58397 1594 aa13.52□□□□□ -0.25
USP4-210ENST00000483212 CARMIL1Q5VZK9 1371 aa13.51□□□□□ -0.25
USP4-210ENST00000483212 SNAPC4Q5SXM2 1469 aa13.49□□□□□ -0.25
USP4-210ENST00000483212 MAGI1Q96QZ7 1491 aaPredicted RBP13.48□□□□□ -0.25
USP4-210ENST00000483212 FHAD1B1AJZ9 1412 aa13.47□□□□□ -0.25
USP4-210ENST00000483212 TNIKQ9UKE5 1360 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 132.2 ms