RNA–Protein interactions for RNA: ENST00000482693.1

SF1-215, Transcript of splicing factor 1, humanhuman

TSL 2

Gene SF1, Length 755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-215ENST00000482693 NISCHQ9Y2I1 1504 aa40.21■■■■■ 4.03
SF1-215ENST00000482693 CCDC180Q9P1Z9 1646 aa35.61■■■■□ 3.29
SF1-215ENST00000482693 ABCC9O60706 1549 aa34.68■■■■□ 3.14
SF1-215ENST00000482693 DCAF8L2P0C7V8 631 aa33.57■■■□□ 2.96
SF1-215ENST00000482693 ZCCHC6Q5VYS8 1495 aaKnown RBP33.51■■■□□ 2.96
SF1-215ENST00000482693 NACADO15069 1562 aa33.49■■■□□ 2.95
SF1-215ENST00000482693 RB1CC1Q8TDY2 1594 aa33.47■■■□□ 2.95
SF1-215ENST00000482693 MYO15BQ96JP2 1530 aa33.39■■■□□ 2.94
SF1-215ENST00000482693 DCAF1Q9Y4B6 1507 aa33.31■■■□□ 2.92
SF1-215ENST00000482693 UNC13AQ9UPW8 1703 aa32.57■■■□□ 2.81
SF1-215ENST00000482693 SCRIBQ14160 1630 aa32.49■■■□□ 2.79
SF1-215ENST00000482693 PABPN1Q86U42 306 aaKnown RBP eCLIP32.49■■■□□ 2.79
SF1-215ENST00000482693 BICRAQ9NZM4 1560 aa32.41■■■□□ 2.78
SF1-215ENST00000482693 SHROOM4Q9ULL8 1493 aa32.16■■■□□ 2.74
SF1-215ENST00000482693 DNAJC5BQ9UF47 199 aa31.68■■■□□ 2.66
SF1-215ENST00000482693 EIF4G1Q04637 1599 aaKnown RBP31.55■■■□□ 2.64
SF1-215ENST00000482693 CC2D2AQ9P2K1 1620 aa31.35■■■□□ 2.61
SF1-215ENST00000482693 CECR2Q9BXF3 1484 aa31.28■■■□□ 2.6
SF1-215ENST00000482693 BAZ1AQ9NRL2 1556 aaPredicted RBP31.15■■■□□ 2.58
SF1-215ENST00000482693 SMARCA4P51532 1647 aa31.12■■■□□ 2.57
SF1-215ENST00000482693 MROH2BQ7Z745 1585 aa30.97■■■□□ 2.55
SF1-215ENST00000482693 ATAD2BQ9ULI0 1458 aa30.95■■■□□ 2.54
SF1-215ENST00000482693 NCAPD3P42695 1498 aa30.94■■■□□ 2.54
SF1-215ENST00000482693 SMARCA2P51531 1590 aa30.92■■■□□ 2.54
SF1-215ENST00000482693 PEG3Q9GZU2 1588 aa30.84■■■□□ 2.53
SF1-215ENST00000482693 HMGXB3Q12766 1538 aa30.75■■■□□ 2.51
SF1-215ENST00000482693 RSF1Q96T23 1441 aaPredicted RBP30.73■■■□□ 2.51
SF1-215ENST00000482693 BAZ1BQ9UIG0 1483 aaKnown RBP30.7■■■□□ 2.51
SF1-215ENST00000482693 WIZO95785 1651 aa30.61■■■□□ 2.49
SF1-215ENST00000482693 TOP2AP11388 1531 aaKnown RBP30.34■■■□□ 2.45
SF1-215ENST00000482693 SUPT5HO00267 1087 aaKnown RBP30.12■■■□□ 2.41
SF1-215ENST00000482693 CADPSQ9ULU8 1353 aa30.05■■■□□ 2.4
SF1-215ENST00000482693 NESP48681 1621 aa30.05■■■□□ 2.4
SF1-215ENST00000482693 LAMC3Q9Y6N6 1575 aa30.03■■■□□ 2.4
SF1-215ENST00000482693 CCDC88BA6NC98 1476 aa30.01■■■□□ 2.4
SF1-215ENST00000482693 ERCC6Q03468 1493 aa29.9■■■□□ 2.38
SF1-215ENST00000482693 CFTRP13569 1480 aa29.89■■■□□ 2.38
SF1-215ENST00000482693 PDS5BQ9NTI5 1447 aa29.88■■■□□ 2.37
SF1-215ENST00000482693 FANCD2Q9BXW9 1451 aa29.67■■■□□ 2.34
SF1-215ENST00000482693 KIF21AQ7Z4S6 1674 aa29.64■■■□□ 2.34
SF1-215ENST00000482693 CEP164Q9UPV0 1460 aa29.6■■■□□ 2.33
SF1-215ENST00000482693 PRDM2Q13029 1718 aa29.54■■■□□ 2.32
SF1-215ENST00000482693 CUX2O14529 1486 aa29.53■■■□□ 2.32
SF1-215ENST00000482693 THOC2Q8NI27 1593 aaKnown RBP29.52■■■□□ 2.32
SF1-215ENST00000482693 MRC2Q9UBG0 1479 aa29.52■■■□□ 2.32
SF1-215ENST00000482693 WDR62O43379 1518 aa29.4■■■□□ 2.3
SF1-215ENST00000482693 URB2Q14146 1524 aaKnown RBP29.34■■■□□ 2.29
SF1-215ENST00000482693 ABCC8Q09428 1581 aa29.27■■■□□ 2.28
SF1-215ENST00000482693 TOPBP1Q92547 1522 aa29.2■■■□□ 2.27
SF1-215ENST00000482693 DNMBPQ6XZF7 1577 aa29.18■■■□□ 2.26
SF1-215ENST00000482693 CUX1P39880 1505 aa29.04■■■□□ 2.24
SF1-215ENST00000482693 IFT140Q96RY7 1462 aa29■■■□□ 2.23
SF1-215ENST00000482693 WRNQ14191 1432 aaPredicted RBP eCLIP28.97■■■□□ 2.23
SF1-215ENST00000482693 POLA1P09884 1462 aaPredicted RBP28.97■■■□□ 2.23
SF1-215ENST00000482693 FGD5Q6ZNL6 1462 aa28.92■■■□□ 2.22
SF1-215ENST00000482693 SOGA1O94964 1423 aa28.9■■■□□ 2.22
SF1-215ENST00000482693 TOP2BQ02880 1626 aa28.85■■■□□ 2.21
SF1-215ENST00000482693 TARBP1Q13395 1621 aaKnown RBP28.84■■■□□ 2.21
SF1-215ENST00000482693 RAD54L2Q9Y4B4 1467 aa28.84■■■□□ 2.21
SF1-215ENST00000482693 SYNJ1O43426 1573 aa28.82■■■□□ 2.2
SF1-215ENST00000482693 BIVM-ERCC5R4GMW8 1640 aa28.81■■■□□ 2.2
SF1-215ENST00000482693 ZNF608Q9ULD9 1512 aaPredicted RBP28.8■■■□□ 2.2
SF1-215ENST00000482693 TDRD9Q8NDG6 1382 aaKnown RBP28.7■■■□□ 2.18
SF1-215ENST00000482693 AQRO60306 1485 aaKnown RBP eCLIP28.7■■■□□ 2.181e-18■■■■■ 38.5
SF1-215ENST00000482693 ABCA10Q8WWZ4 1543 aa28.67■■■□□ 2.18
SF1-215ENST00000482693 WDR97A6NE52 1622 aa28.66■■■□□ 2.18
SF1-215ENST00000482693 EIF4G3O43432 1585 aaKnown RBP28.66■■■□□ 2.18
SF1-215ENST00000482693 GAPVD1Q14C86 1478 aa28.54■■■□□ 2.16
SF1-215ENST00000482693 GRIN2BQ13224 1484 aa28.53■■■□□ 2.16
SF1-215ENST00000482693 ABCA5Q8WWZ7 1642 aa28.48■■■□□ 2.15
SF1-215ENST00000482693 TRIM41Q8WV44 630 aa28.48■■■□□ 2.15
SF1-215ENST00000482693 DNAJC5Q9H3Z4 198 aa28.43■■■□□ 2.14
SF1-215ENST00000482693 SNAPC4Q5SXM2 1469 aa28.41■■■□□ 2.14
SF1-215ENST00000482693 MAGI1Q96QZ7 1491 aaPredicted RBP28.41■■■□□ 2.14
SF1-215ENST00000482693 OSCARQ8IYS5 282 aa28.41■■■□□ 2.14
SF1-215ENST00000482693 KIF27Q86VH2 1401 aa28.37■■■□□ 2.13
SF1-215ENST00000482693 PBRM1Q86U86 1689 aa28.36■■■□□ 2.13
SF1-215ENST00000482693 FBLN2P98095 1184 aa28.35■■■□□ 2.13
SF1-215ENST00000482693 ERICH3Q5RHP9 1530 aa28.33■■■□□ 2.13
SF1-215ENST00000482693 CHMP7Q8WUX9 453 aaPredicted RBP28.33■■■□□ 2.13
SF1-215ENST00000482693 SYNJ2O15056 1496 aa28.31■■■□□ 2.12
SF1-215ENST00000482693 IGF1RP08069 1367 aa28.25■■■□□ 2.11
SF1-215ENST00000482693 CHIC1Q5VXU3 224 aa28.25■■■□□ 2.11
SF1-215ENST00000482693 FHAD1B1AJZ9 1412 aa28.25■■■□□ 2.11
SF1-215ENST00000482693 CHD1O14646 1710 aa28.23■■■□□ 2.11
SF1-215ENST00000482693 ADAMTS12P58397 1594 aa28.2■■■□□ 2.1
SF1-215ENST00000482693 GRIN2AQ12879 1464 aa28.13■■■□□ 2.09
SF1-215ENST00000482693 RUSC2Q8N2Y8 1516 aa28.11■■■□□ 2.09
SF1-215ENST00000482693 CUL7Q14999 1698 aa28.08■■■□□ 2.09
SF1-215ENST00000482693 CARMIL1Q5VZK9 1371 aa28.08■■■□□ 2.09
SF1-215ENST00000482693 NUP160Q12769 1436 aa28.01■■■□□ 2.08
SF1-215ENST00000482693 CLASP1Q7Z460 1538 aa27.99■■■□□ 2.07
SF1-215ENST00000482693 EEA1Q15075 1411 aa27.98■■■□□ 2.07
SF1-215ENST00000482693 CEP170Q5SW79 1584 aa27.94■■■□□ 2.06
SF1-215ENST00000482693 CSRNP3Q8WYN3 585 aa27.94■■■□□ 2.06
SF1-215ENST00000482693 RAPGEF2Q9Y4G8 1499 aa27.91■■■□□ 2.06
SF1-215ENST00000482693 PRXQ9BXM0 1461 aa27.86■■■□□ 2.05
SF1-215ENST00000482693 ARHGEF11O15085 1522 aa27.84■■■□□ 2.05
SF1-215ENST00000482693 FAM9AQ8IZU1 332 aaPredicted RBP27.83■■■□□ 2.05
SF1-215ENST00000482693 KIAA0586Q9BVV6 1533 aa27.82■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms