RNA–Protein interactions for RNA: ENST00000482050.1

DDR1-243, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 5

Gene DDR1, Length 246 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-243ENST00000482050 NISCHQ9Y2I1 1504 aa41.79■■■■■ 4.28
DDR1-243ENST00000482050 CCDC180Q9P1Z9 1646 aa36.99■■■■□ 3.51
DDR1-243ENST00000482050 ABCC9O60706 1549 aa36.14■■■■□ 3.38
DDR1-243ENST00000482050 DCAF8L2P0C7V8 631 aa34.99■■■■□ 3.19
DDR1-243ENST00000482050 ZCCHC6Q5VYS8 1495 aaKnown RBP34.86■■■■□ 3.17
DDR1-243ENST00000482050 NACADO15069 1562 aa34.75■■■■□ 3.15
DDR1-243ENST00000482050 RB1CC1Q8TDY2 1594 aa34.75■■■■□ 3.15
DDR1-243ENST00000482050 MYO15BQ96JP2 1530 aa34.55■■■■□ 3.12
DDR1-243ENST00000482050 DCAF1Q9Y4B6 1507 aa34.51■■■■□ 3.12
DDR1-243ENST00000482050 UNC13AQ9UPW8 1703 aa33.98■■■■□ 3.03
DDR1-243ENST00000482050 SCRIBQ14160 1630 aa33.91■■■■□ 3.02
DDR1-243ENST00000482050 PABPN1Q86U42 306 aaKnown RBP eCLIP33.85■■■■□ 3.01
DDR1-243ENST00000482050 BICRAQ9NZM4 1560 aa33.72■■■□□ 2.99
DDR1-243ENST00000482050 SHROOM4Q9ULL8 1493 aa33.32■■■□□ 2.92
DDR1-243ENST00000482050 DNAJC5BQ9UF47 199 aa32.97■■■□□ 2.87
DDR1-243ENST00000482050 EIF4G1Q04637 1599 aaKnown RBP32.82■■■□□ 2.84
DDR1-243ENST00000482050 CC2D2AQ9P2K1 1620 aa32.64■■■□□ 2.82
DDR1-243ENST00000482050 CECR2Q9BXF3 1484 aa32.6■■■□□ 2.81
DDR1-243ENST00000482050 SMARCA4P51532 1647 aa32.39■■■□□ 2.78
DDR1-243ENST00000482050 BAZ1AQ9NRL2 1556 aaPredicted RBP32.36■■■□□ 2.77
DDR1-243ENST00000482050 MROH2BQ7Z745 1585 aa32.26■■■□□ 2.75
DDR1-243ENST00000482050 ATAD2BQ9ULI0 1458 aa32.16■■■□□ 2.74
DDR1-243ENST00000482050 SMARCA2P51531 1590 aa32.11■■■□□ 2.73
DDR1-243ENST00000482050 NCAPD3P42695 1498 aa32.07■■■□□ 2.72
DDR1-243ENST00000482050 PEG3Q9GZU2 1588 aa32■■■□□ 2.71
DDR1-243ENST00000482050 RSF1Q96T23 1441 aaPredicted RBP31.96■■■□□ 2.71
DDR1-243ENST00000482050 WIZO95785 1651 aa31.93■■■□□ 2.7
DDR1-243ENST00000482050 BAZ1BQ9UIG0 1483 aaKnown RBP31.93■■■□□ 2.7
DDR1-243ENST00000482050 HMGXB3Q12766 1538 aa31.93■■■□□ 2.7
DDR1-243ENST00000482050 TOP2AP11388 1531 aaKnown RBP31.56■■■□□ 2.64
DDR1-243ENST00000482050 SUPT5HO00267 1087 aaKnown RBP31.44■■■□□ 2.62
DDR1-243ENST00000482050 NESP48681 1621 aa31.34■■■□□ 2.61
DDR1-243ENST00000482050 CCDC88BA6NC98 1476 aa31.22■■■□□ 2.59
DDR1-243ENST00000482050 LAMC3Q9Y6N6 1575 aa31.19■■■□□ 2.58
DDR1-243ENST00000482050 CADPSQ9ULU8 1353 aa31.18■■■□□ 2.58
DDR1-243ENST00000482050 ERCC6Q03468 1493 aa31.12■■■□□ 2.57
DDR1-243ENST00000482050 CFTRP13569 1480 aa31.03■■■□□ 2.56
DDR1-243ENST00000482050 PDS5BQ9NTI5 1447 aa31■■■□□ 2.55
DDR1-243ENST00000482050 KIF21AQ7Z4S6 1674 aa30.93■■■□□ 2.54
DDR1-243ENST00000482050 FANCD2Q9BXW9 1451 aa30.85■■■□□ 2.53
DDR1-243ENST00000482050 CEP164Q9UPV0 1460 aa30.78■■■□□ 2.52
DDR1-243ENST00000482050 PRDM2Q13029 1718 aa30.77■■■□□ 2.52
DDR1-243ENST00000482050 THOC2Q8NI27 1593 aaKnown RBP30.75■■■□□ 2.51
DDR1-243ENST00000482050 MRC2Q9UBG0 1479 aa30.69■■■□□ 2.5
DDR1-243ENST00000482050 CUX2O14529 1486 aa30.62■■■□□ 2.49
DDR1-243ENST00000482050 WDR62O43379 1518 aa30.55■■■□□ 2.48
DDR1-243ENST00000482050 URB2Q14146 1524 aaKnown RBP30.53■■■□□ 2.48
DDR1-243ENST00000482050 TOPBP1Q92547 1522 aa30.37■■■□□ 2.45
DDR1-243ENST00000482050 DNMBPQ6XZF7 1577 aa30.34■■■□□ 2.45
DDR1-243ENST00000482050 ABCC8Q09428 1581 aa30.32■■■□□ 2.44
DDR1-243ENST00000482050 CUX1P39880 1505 aa30.25■■■□□ 2.43
DDR1-243ENST00000482050 WRNQ14191 1432 aaPredicted RBP eCLIP30.13■■■□□ 2.41
DDR1-243ENST00000482050 POLA1P09884 1462 aaPredicted RBP30.13■■■□□ 2.41
DDR1-243ENST00000482050 FGD5Q6ZNL6 1462 aa30.12■■■□□ 2.41
DDR1-243ENST00000482050 IFT140Q96RY7 1462 aa30.1■■■□□ 2.41
DDR1-243ENST00000482050 SYNJ1O43426 1573 aa30.06■■■□□ 2.4
DDR1-243ENST00000482050 RAD54L2Q9Y4B4 1467 aa30.06■■■□□ 2.4
DDR1-243ENST00000482050 SOGA1O94964 1423 aa30.03■■■□□ 2.4
DDR1-243ENST00000482050 ZNF608Q9ULD9 1512 aaPredicted RBP30.01■■■□□ 2.4
DDR1-243ENST00000482050 TOP2BQ02880 1626 aa30■■■□□ 2.39
DDR1-243ENST00000482050 TARBP1Q13395 1621 aaKnown RBP30■■■□□ 2.39
DDR1-243ENST00000482050 BIVM-ERCC5R4GMW8 1640 aa29.99■■■□□ 2.39
DDR1-243ENST00000482050 TDRD9Q8NDG6 1382 aaKnown RBP29.88■■■□□ 2.37
DDR1-243ENST00000482050 AQRO60306 1485 aaKnown RBP eCLIP29.87■■■□□ 2.372e-7■■■■■ 31.6
DDR1-243ENST00000482050 EIF4G3O43432 1585 aaKnown RBP29.86■■■□□ 2.37
DDR1-243ENST00000482050 WDR97A6NE52 1622 aa29.8■■■□□ 2.36
DDR1-243ENST00000482050 ABCA10Q8WWZ4 1543 aa29.79■■■□□ 2.36
DDR1-243ENST00000482050 GAPVD1Q14C86 1478 aa29.68■■■□□ 2.34
DDR1-243ENST00000482050 ABCA5Q8WWZ7 1642 aa29.64■■■□□ 2.34
DDR1-243ENST00000482050 GRIN2BQ13224 1484 aa29.62■■■□□ 2.33
DDR1-243ENST00000482050 TRIM41Q8WV44 630 aa29.62■■■□□ 2.33
DDR1-243ENST00000482050 SNAPC4Q5SXM2 1469 aa29.6■■■□□ 2.33
DDR1-243ENST00000482050 PBRM1Q86U86 1689 aa29.59■■■□□ 2.33
DDR1-243ENST00000482050 FBLN2P98095 1184 aa29.53■■■□□ 2.32
DDR1-243ENST00000482050 MAGI1Q96QZ7 1491 aaPredicted RBP29.5■■■□□ 2.31
DDR1-243ENST00000482050 KIF27Q86VH2 1401 aa29.47■■■□□ 2.31
DDR1-243ENST00000482050 DNAJC5Q9H3Z4 198 aa29.46■■■□□ 2.31
DDR1-243ENST00000482050 CHD1O14646 1710 aa29.45■■■□□ 2.31
DDR1-243ENST00000482050 OSCARQ8IYS5 282 aa29.45■■■□□ 2.31
DDR1-243ENST00000482050 CHMP7Q8WUX9 453 aaPredicted RBP29.43■■■□□ 2.3
DDR1-243ENST00000482050 ERICH3Q5RHP9 1530 aa29.42■■■□□ 2.3
DDR1-243ENST00000482050 CHIC1Q5VXU3 224 aa29.41■■■□□ 2.3
DDR1-243ENST00000482050 SYNJ2O15056 1496 aa29.41■■■□□ 2.3
DDR1-243ENST00000482050 ADAMTS12P58397 1594 aa29.37■■■□□ 2.29
DDR1-243ENST00000482050 RUSC2Q8N2Y8 1516 aa29.34■■■□□ 2.29
DDR1-243ENST00000482050 IGF1RP08069 1367 aa29.33■■■□□ 2.29
DDR1-243ENST00000482050 FHAD1B1AJZ9 1412 aa29.32■■■□□ 2.28
DDR1-243ENST00000482050 GRIN2AQ12879 1464 aa29.25■■■□□ 2.27
DDR1-243ENST00000482050 CUL7Q14999 1698 aa29.2■■■□□ 2.26
DDR1-243ENST00000482050 CARMIL1Q5VZK9 1371 aa29.17■■■□□ 2.26
DDR1-243ENST00000482050 CLASP1Q7Z460 1538 aa29.11■■■□□ 2.25
DDR1-243ENST00000482050 CEP170Q5SW79 1584 aa29.11■■■□□ 2.25
DDR1-243ENST00000482050 FAM9AQ8IZU1 332 aaPredicted RBP29.1■■■□□ 2.25
DDR1-243ENST00000482050 NUP160Q12769 1436 aa29.1■■■□□ 2.25
DDR1-243ENST00000482050 CSRNP3Q8WYN3 585 aa29.01■■■□□ 2.23
DDR1-243ENST00000482050 RAPGEF2Q9Y4G8 1499 aa29.01■■■□□ 2.23
DDR1-243ENST00000482050 EEA1Q15075 1411 aa29.01■■■□□ 2.23
DDR1-243ENST00000482050 ARHGEF11O15085 1522 aa28.97■■■□□ 2.23
DDR1-243ENST00000482050 PRXQ9BXM0 1461 aa28.95■■■□□ 2.22
DDR1-243ENST00000482050 RIMBP3CA6NJZ7 1639 aa28.94■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms