RNA–Protein interactions for RNA: ENST00000479361.1

PERM1-203, Transcript of PPARGC1 and ESRR induced regulator, muscle 1, humanhuman

TSL 1 (best)

Gene PERM1, Length 1,208 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PERM1-203ENST00000479361 NISCHQ9Y2I1 1504 aa60■■■■■ 7.2
PERM1-203ENST00000479361 CCDC180Q9P1Z9 1646 aa53.19■■■■■ 6.11
PERM1-203ENST00000479361 ABCC9O60706 1549 aa51.7■■■■■ 5.87
PERM1-203ENST00000479361 ZCCHC6Q5VYS8 1495 aaKnown RBP50.06■■■■■ 5.6
PERM1-203ENST00000479361 DCAF8L2P0C7V8 631 aa50.03■■■■■ 5.6
PERM1-203ENST00000479361 NACADO15069 1562 aa49.96■■■■■ 5.59
PERM1-203ENST00000479361 RB1CC1Q8TDY2 1594 aa49.92■■■■■ 5.58
PERM1-203ENST00000479361 MYO15BQ96JP2 1530 aa49.79■■■■■ 5.56
PERM1-203ENST00000479361 DCAF1Q9Y4B6 1507 aa49.7■■■■■ 5.55
PERM1-203ENST00000479361 UNC13AQ9UPW8 1703 aa48.68■■■■■ 5.38
PERM1-203ENST00000479361 SCRIBQ14160 1630 aa48.54■■■■■ 5.36
PERM1-203ENST00000479361 PABPN1Q86U42 306 aaKnown RBP eCLIP48.38■■■■■ 5.34
PERM1-203ENST00000479361 BICRAQ9NZM4 1560 aa48.33■■■■■ 5.33
PERM1-203ENST00000479361 SHROOM4Q9ULL8 1493 aa47.97■■■■■ 5.27
PERM1-203ENST00000479361 DNAJC5BQ9UF47 199 aa47.08■■■■■ 5.13
PERM1-203ENST00000479361 EIF4G1Q04637 1599 aaKnown RBP47.07■■■■■ 5.12
PERM1-203ENST00000479361 CC2D2AQ9P2K1 1620 aa46.77■■■■■ 5.08
PERM1-203ENST00000479361 CECR2Q9BXF3 1484 aa46.66■■■■■ 5.06
PERM1-203ENST00000479361 BAZ1AQ9NRL2 1556 aaPredicted RBP46.51■■■■■ 5.04
PERM1-203ENST00000479361 SMARCA4P51532 1647 aa46.47■■■■■ 5.03
PERM1-203ENST00000479361 MROH2BQ7Z745 1585 aa46.22■■■■■ 4.99
PERM1-203ENST00000479361 SMARCA2P51531 1590 aa46.14■■■■■ 4.98
PERM1-203ENST00000479361 ATAD2BQ9ULI0 1458 aa46.14■■■■■ 4.98
PERM1-203ENST00000479361 NCAPD3P42695 1498 aa46.09■■■■■ 4.97
PERM1-203ENST00000479361 PEG3Q9GZU2 1588 aa46.03■■■■■ 4.96
PERM1-203ENST00000479361 HMGXB3Q12766 1538 aa45.89■■■■■ 4.94
PERM1-203ENST00000479361 RSF1Q96T23 1441 aaPredicted RBP45.85■■■■■ 4.93
PERM1-203ENST00000479361 BAZ1BQ9UIG0 1483 aaKnown RBP45.81■■■■■ 4.92
PERM1-203ENST00000479361 WIZO95785 1651 aa45.72■■■■■ 4.91
PERM1-203ENST00000479361 TOP2AP11388 1531 aaKnown RBP45.31■■■■■ 4.84
PERM1-203ENST00000479361 SUPT5HO00267 1087 aaKnown RBP44.97■■■■■ 4.79
PERM1-203ENST00000479361 NESP48681 1621 aa44.82■■■■■ 4.77
PERM1-203ENST00000479361 LAMC3Q9Y6N6 1575 aa44.82■■■■■ 4.76
PERM1-203ENST00000479361 CADPSQ9ULU8 1353 aa44.78■■■■■ 4.76
PERM1-203ENST00000479361 CCDC88BA6NC98 1476 aa44.77■■■■■ 4.76
PERM1-203ENST00000479361 ERCC6Q03468 1493 aa44.59■■■■■ 4.73
PERM1-203ENST00000479361 CFTRP13569 1480 aa44.57■■■■■ 4.73
PERM1-203ENST00000479361 PDS5BQ9NTI5 1447 aa44.55■■■■■ 4.72
PERM1-203ENST00000479361 KIF21AQ7Z4S6 1674 aa44.28■■■■■ 4.68
PERM1-203ENST00000479361 FANCD2Q9BXW9 1451 aa44.25■■■■■ 4.67
PERM1-203ENST00000479361 PRDM2Q13029 1718 aa44.21■■■■■ 4.67
PERM1-203ENST00000479361 CEP164Q9UPV0 1460 aa44.18■■■■■ 4.66
PERM1-203ENST00000479361 THOC2Q8NI27 1593 aaKnown RBP44.06■■■■■ 4.64
PERM1-203ENST00000479361 MRC2Q9UBG0 1479 aa44.03■■■■■ 4.64
PERM1-203ENST00000479361 CUX2O14529 1486 aa43.99■■■■■ 4.63
PERM1-203ENST00000479361 WDR62O43379 1518 aa43.85■■■■■ 4.61
PERM1-203ENST00000479361 URB2Q14146 1524 aaKnown RBP43.74■■■■■ 4.59
PERM1-203ENST00000479361 ABCC8Q09428 1581 aa43.65■■■■■ 4.58
PERM1-203ENST00000479361 TOPBP1Q92547 1522 aa43.57■■■■■ 4.56
PERM1-203ENST00000479361 DNMBPQ6XZF7 1577 aa43.55■■■■■ 4.56
PERM1-203ENST00000479361 CUX1P39880 1505 aa43.35■■■■■ 4.53
PERM1-203ENST00000479361 WRNQ14191 1432 aaPredicted RBP eCLIP43.25■■■■■ 4.51
PERM1-203ENST00000479361 IFT140Q96RY7 1462 aa43.24■■■■■ 4.51
PERM1-203ENST00000479361 POLA1P09884 1462 aaPredicted RBP43.22■■■■■ 4.51
PERM1-203ENST00000479361 FGD5Q6ZNL6 1462 aa43.17■■■■■ 4.5
PERM1-203ENST00000479361 TOP2BQ02880 1626 aa43.09■■■■■ 4.49
PERM1-203ENST00000479361 SOGA1O94964 1423 aa43.08■■■■■ 4.49
PERM1-203ENST00000479361 BIVM-ERCC5R4GMW8 1640 aa43.06■■■■■ 4.48
PERM1-203ENST00000479361 SYNJ1O43426 1573 aa43.06■■■■■ 4.48
PERM1-203ENST00000479361 TARBP1Q13395 1621 aaKnown RBP43.04■■■■■ 4.48
PERM1-203ENST00000479361 RAD54L2Q9Y4B4 1467 aa43■■■■■ 4.47
PERM1-203ENST00000479361 ZNF608Q9ULD9 1512 aaPredicted RBP42.95■■■■■ 4.47
PERM1-203ENST00000479361 EIF4G3O43432 1585 aaKnown RBP42.81■■■■■ 4.44
PERM1-203ENST00000479361 WDR97A6NE52 1622 aa42.79■■■■■ 4.44
PERM1-203ENST00000479361 ABCA10Q8WWZ4 1543 aa42.78■■■■■ 4.44
PERM1-203ENST00000479361 TDRD9Q8NDG6 1382 aaKnown RBP42.78■■■■■ 4.44
PERM1-203ENST00000479361 AQRO60306 1485 aaKnown RBP eCLIP42.77■■■■■ 4.44
PERM1-203ENST00000479361 GAPVD1Q14C86 1478 aa42.59■■■■■ 4.41
PERM1-203ENST00000479361 ABCA5Q8WWZ7 1642 aa42.55■■■■■ 4.4
PERM1-203ENST00000479361 GRIN2BQ13224 1484 aa42.54■■■■■ 4.4
PERM1-203ENST00000479361 TRIM41Q8WV44 630 aa42.5■■■■■ 4.39
PERM1-203ENST00000479361 PBRM1Q86U86 1689 aa42.41■■■■■ 4.38
PERM1-203ENST00000479361 SNAPC4Q5SXM2 1469 aa42.41■■■■■ 4.38
PERM1-203ENST00000479361 MAGI1Q96QZ7 1491 aaPredicted RBP42.4■■■■■ 4.38
PERM1-203ENST00000479361 KIF27Q86VH2 1401 aa42.35■■■■■ 4.37
PERM1-203ENST00000479361 ERICH3Q5RHP9 1530 aa42.29■■■■■ 4.36
PERM1-203ENST00000479361 FBLN2P98095 1184 aa42.25■■■■■ 4.35
PERM1-203ENST00000479361 OSCARQ8IYS5 282 aa42.25■■■■■ 4.35
PERM1-203ENST00000479361 SYNJ2O15056 1496 aa42.22■■■■■ 4.35
PERM1-203ENST00000479361 CHMP7Q8WUX9 453 aaPredicted RBP42.21■■■■■ 4.35
PERM1-203ENST00000479361 DNAJC5Q9H3Z4 198 aa42.21■■■■■ 4.35
PERM1-203ENST00000479361 CHD1O14646 1710 aa42.17■■■■■ 4.34
PERM1-203ENST00000479361 CHIC1Q5VXU3 224 aa42.16■■■■■ 4.34
PERM1-203ENST00000479361 ADAMTS12P58397 1594 aa42.13■■■■■ 4.33
PERM1-203ENST00000479361 FHAD1B1AJZ9 1412 aa42.12■■■■■ 4.33
PERM1-203ENST00000479361 IGF1RP08069 1367 aa42.09■■■■■ 4.33
PERM1-203ENST00000479361 GRIN2AQ12879 1464 aa41.98■■■■■ 4.31
PERM1-203ENST00000479361 CUL7Q14999 1698 aa41.96■■■■■ 4.31
PERM1-203ENST00000479361 RUSC2Q8N2Y8 1516 aa41.96■■■■■ 4.31
PERM1-203ENST00000479361 CARMIL1Q5VZK9 1371 aa41.87■■■■■ 4.29
PERM1-203ENST00000479361 EEA1Q15075 1411 aa41.78■■■■■ 4.28
PERM1-203ENST00000479361 NUP160Q12769 1436 aa41.78■■■■■ 4.28
PERM1-203ENST00000479361 CLASP1Q7Z460 1538 aa41.75■■■■■ 4.27
PERM1-203ENST00000479361 CEP170Q5SW79 1584 aa41.71■■■■■ 4.27
PERM1-203ENST00000479361 CSRNP3Q8WYN3 585 aa41.66■■■■■ 4.26
PERM1-203ENST00000479361 RAPGEF2Q9Y4G8 1499 aa41.66■■■■■ 4.26
PERM1-203ENST00000479361 PRXQ9BXM0 1461 aa41.58■■■■■ 4.25
PERM1-203ENST00000479361 FAM9AQ8IZU1 332 aaPredicted RBP41.56■■■■■ 4.24
PERM1-203ENST00000479361 ARHGEF11O15085 1522 aa41.51■■■■■ 4.24
PERM1-203ENST00000479361 KIAA0586Q9BVV6 1533 aa41.48■■■■■ 4.23
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms