RNA–Protein interactions for RNA: ENST00000479348.2

PCIF1-202, Transcript of PDX1 C-terminal inhibiting factor 1, humanhuman

TSL 1 (best)

Gene PCIF1, Length 1,324 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1-202ENST00000479348 NISCHQ9Y2I1 1504 aa33.47■■■□□ 2.95
PCIF1-202ENST00000479348 CCDC180Q9P1Z9 1646 aa29.65■■■□□ 2.34
PCIF1-202ENST00000479348 ABCC9O60706 1549 aa28.73■■■□□ 2.19
PCIF1-202ENST00000479348 ZCCHC6Q5VYS8 1495 aaKnown RBP27.91■■■□□ 2.06
PCIF1-202ENST00000479348 NACADO15069 1562 aa27.85■■■□□ 2.05
PCIF1-202ENST00000479348 DCAF8L2P0C7V8 631 aa27.84■■■□□ 2.05
PCIF1-202ENST00000479348 MYO15BQ96JP2 1530 aa27.8■■■□□ 2.04
PCIF1-202ENST00000479348 RB1CC1Q8TDY2 1594 aa27.8■■■□□ 2.04
PCIF1-202ENST00000479348 DCAF1Q9Y4B6 1507 aa27.75■■■□□ 2.03
PCIF1-202ENST00000479348 UNC13AQ9UPW8 1703 aa27.08■■□□□ 1.93
PCIF1-202ENST00000479348 SCRIBQ14160 1630 aa27■■□□□ 1.91
PCIF1-202ENST00000479348 BICRAQ9NZM4 1560 aa26.91■■□□□ 1.9
PCIF1-202ENST00000479348 PABPN1Q86U42 306 aaKnown RBP eCLIP26.9■■□□□ 1.9
PCIF1-202ENST00000479348 SHROOM4Q9ULL8 1493 aa26.75■■□□□ 1.87
PCIF1-202ENST00000479348 EIF4G1Q04637 1599 aaKnown RBP26.19■■□□□ 1.78
PCIF1-202ENST00000479348 DNAJC5BQ9UF47 199 aa26.15■■□□□ 1.78
PCIF1-202ENST00000479348 CC2D2AQ9P2K1 1620 aa26.01■■□□□ 1.75
PCIF1-202ENST00000479348 CECR2Q9BXF3 1484 aa26■■□□□ 1.75
PCIF1-202ENST00000479348 BAZ1AQ9NRL2 1556 aaPredicted RBP25.93■■□□□ 1.74
PCIF1-202ENST00000479348 SMARCA4P51532 1647 aa25.9■■□□□ 1.74
PCIF1-202ENST00000479348 MROH2BQ7Z745 1585 aa25.76■■□□□ 1.71
PCIF1-202ENST00000479348 SMARCA2P51531 1590 aa25.72■■□□□ 1.71
PCIF1-202ENST00000479348 ATAD2BQ9ULI0 1458 aa25.72■■□□□ 1.71
PCIF1-202ENST00000479348 NCAPD3P42695 1498 aa25.7■■□□□ 1.71
PCIF1-202ENST00000479348 PEG3Q9GZU2 1588 aa25.68■■□□□ 1.7
PCIF1-202ENST00000479348 RSF1Q96T23 1441 aaPredicted RBP25.59■■□□□ 1.69
PCIF1-202ENST00000479348 HMGXB3Q12766 1538 aa25.58■■□□□ 1.68
PCIF1-202ENST00000479348 BAZ1BQ9UIG0 1483 aaKnown RBP25.51■■□□□ 1.67
PCIF1-202ENST00000479348 WIZO95785 1651 aa25.48■■□□□ 1.67
PCIF1-202ENST00000479348 TOP2AP11388 1531 aaKnown RBP25.26■■□□□ 1.63
PCIF1-202ENST00000479348 SUPT5HO00267 1087 aaKnown RBP25.1■■□□□ 1.61
PCIF1-202ENST00000479348 LAMC3Q9Y6N6 1575 aa24.97■■□□□ 1.59
PCIF1-202ENST00000479348 CCDC88BA6NC98 1476 aa24.96■■□□□ 1.59
PCIF1-202ENST00000479348 CADPSQ9ULU8 1353 aa24.96■■□□□ 1.59
PCIF1-202ENST00000479348 NESP48681 1621 aa24.92■■□□□ 1.58
PCIF1-202ENST00000479348 CFTRP13569 1480 aa24.85■■□□□ 1.57
PCIF1-202ENST00000479348 PDS5BQ9NTI5 1447 aa24.81■■□□□ 1.56
PCIF1-202ENST00000479348 ERCC6Q03468 1493 aa24.78■■□□□ 1.56
PCIF1-202ENST00000479348 FANCD2Q9BXW9 1451 aa24.65■■□□□ 1.54
PCIF1-202ENST00000479348 PRDM2Q13029 1718 aa24.63■■□□□ 1.53
PCIF1-202ENST00000479348 KIF21AQ7Z4S6 1674 aa24.62■■□□□ 1.53
PCIF1-202ENST00000479348 CEP164Q9UPV0 1460 aa24.6■■□□□ 1.53
PCIF1-202ENST00000479348 MRC2Q9UBG0 1479 aa24.51■■□□□ 1.51
PCIF1-202ENST00000479348 THOC2Q8NI27 1593 aaKnown RBP24.5■■□□□ 1.51
PCIF1-202ENST00000479348 CUX2O14529 1486 aa24.47■■□□□ 1.51
PCIF1-202ENST00000479348 WDR62O43379 1518 aa24.41■■□□□ 1.5
PCIF1-202ENST00000479348 URB2Q14146 1524 aaKnown RBP24.36■■□□□ 1.49
PCIF1-202ENST00000479348 ABCC8Q09428 1581 aa24.36■■□□□ 1.49
PCIF1-202ENST00000479348 DNMBPQ6XZF7 1577 aa24.27■■□□□ 1.47
PCIF1-202ENST00000479348 TOPBP1Q92547 1522 aa24.26■■□□□ 1.47
PCIF1-202ENST00000479348 CUX1P39880 1505 aa24.16■■□□□ 1.46
PCIF1-202ENST00000479348 WRNQ14191 1432 aaPredicted RBP eCLIP24.12■■□□□ 1.45
PCIF1-202ENST00000479348 IFT140Q96RY7 1462 aa24.09■■□□□ 1.45
PCIF1-202ENST00000479348 POLA1P09884 1462 aaPredicted RBP24.07■■□□□ 1.44
PCIF1-202ENST00000479348 FGD5Q6ZNL6 1462 aa24.05■■□□□ 1.44
PCIF1-202ENST00000479348 TOP2BQ02880 1626 aa24.03■■□□□ 1.44
PCIF1-202ENST00000479348 BIVM-ERCC5R4GMW8 1640 aa24.02■■□□□ 1.44
PCIF1-202ENST00000479348 SOGA1O94964 1423 aa24.01■■□□□ 1.43
PCIF1-202ENST00000479348 SYNJ1O43426 1573 aa23.99■■□□□ 1.43
PCIF1-202ENST00000479348 DNAJC5Q9H3Z4 198 aa23.99■■□□□ 1.43
PCIF1-202ENST00000479348 TARBP1Q13395 1621 aaKnown RBP23.97■■□□□ 1.43
PCIF1-202ENST00000479348 RAD54L2Q9Y4B4 1467 aa23.94■■□□□ 1.42
PCIF1-202ENST00000479348 ZNF608Q9ULD9 1512 aaPredicted RBP23.89■■□□□ 1.42
PCIF1-202ENST00000479348 WDR97A6NE52 1622 aa23.86■■□□□ 1.41
PCIF1-202ENST00000479348 ABCA10Q8WWZ4 1543 aa23.85■■□□□ 1.41
PCIF1-202ENST00000479348 TDRD9Q8NDG6 1382 aaKnown RBP23.82■■□□□ 1.4
PCIF1-202ENST00000479348 AQRO60306 1485 aaKnown RBP eCLIP23.81■■□□□ 1.43e-7■■■■■ 38.4
PCIF1-202ENST00000479348 EIF4G3O43432 1585 aaKnown RBP23.81■■□□□ 1.4
PCIF1-202ENST00000479348 GAPVD1Q14C86 1478 aa23.73■■□□□ 1.39
PCIF1-202ENST00000479348 TRIM41Q8WV44 630 aa23.73■■□□□ 1.39
PCIF1-202ENST00000479348 GRIN2BQ13224 1484 aa23.71■■□□□ 1.39
PCIF1-202ENST00000479348 ABCA5Q8WWZ7 1642 aa23.7■■□□□ 1.38
PCIF1-202ENST00000479348 KIF27Q86VH2 1401 aa23.63■■□□□ 1.37
PCIF1-202ENST00000479348 MAGI1Q96QZ7 1491 aaPredicted RBP23.62■■□□□ 1.37
PCIF1-202ENST00000479348 PBRM1Q86U86 1689 aa23.6■■□□□ 1.37
PCIF1-202ENST00000479348 SNAPC4Q5SXM2 1469 aa23.6■■□□□ 1.37
PCIF1-202ENST00000479348 ERICH3Q5RHP9 1530 aa23.59■■□□□ 1.37
PCIF1-202ENST00000479348 CHIC1Q5VXU3 224 aa23.59■■□□□ 1.37
PCIF1-202ENST00000479348 OSCARQ8IYS5 282 aa23.53■■□□□ 1.36
PCIF1-202ENST00000479348 SYNJ2O15056 1496 aa23.51■■□□□ 1.35
PCIF1-202ENST00000479348 CHMP7Q8WUX9 453 aaPredicted RBP23.5■■□□□ 1.35
PCIF1-202ENST00000479348 IGF1RP08069 1367 aa23.49■■□□□ 1.35
PCIF1-202ENST00000479348 FBLN2P98095 1184 aa23.49■■□□□ 1.35
PCIF1-202ENST00000479348 FHAD1B1AJZ9 1412 aa23.49■■□□□ 1.35
PCIF1-202ENST00000479348 ADAMTS12P58397 1594 aa23.46■■□□□ 1.35
PCIF1-202ENST00000479348 CHD1O14646 1710 aa23.44■■□□□ 1.34
PCIF1-202ENST00000479348 CUL7Q14999 1698 aa23.4■■□□□ 1.34
PCIF1-202ENST00000479348 RUSC2Q8N2Y8 1516 aa23.4■■□□□ 1.34
PCIF1-202ENST00000479348 GRIN2AQ12879 1464 aa23.38■■□□□ 1.33
PCIF1-202ENST00000479348 EEA1Q15075 1411 aa23.37■■□□□ 1.33
PCIF1-202ENST00000479348 CARMIL1Q5VZK9 1371 aa23.36■■□□□ 1.33
PCIF1-202ENST00000479348 NUP160Q12769 1436 aa23.28■■□□□ 1.32
PCIF1-202ENST00000479348 CSRNP3Q8WYN3 585 aa23.28■■□□□ 1.32
PCIF1-202ENST00000479348 RAPGEF2Q9Y4G8 1499 aa23.25■■□□□ 1.31
PCIF1-202ENST00000479348 CLASP1Q7Z460 1538 aa23.24■■□□□ 1.31
PCIF1-202ENST00000479348 PRXQ9BXM0 1461 aa23.22■■□□□ 1.31
PCIF1-202ENST00000479348 CEP170Q5SW79 1584 aa23.21■■□□□ 1.31
PCIF1-202ENST00000479348 FAM9AQ8IZU1 332 aaPredicted RBP23.17■■□□□ 1.3
PCIF1-202ENST00000479348 KIAA0586Q9BVV6 1533 aa23.14■■□□□ 1.29
PCIF1-202ENST00000479348 ARHGEF11O15085 1522 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 627.3 ms