RNA–Protein interactions for RNA: ENST00000479197.1

RFK-204, Transcript of riboflavin kinase, human

TSL 1 (best)

Gene RFK, Length 1,501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFK-204	ENST00000479197	NISCH	Q9Y2I1	1504 aa		43.25	■■■■■ 4.51
RFK-204	ENST00000479197	CCDC180	Q9P1Z9	1646 aa		38.37	■■■■□ 3.73
RFK-204	ENST00000479197	ABCC9	O60706	1549 aa		37.22	■■■■□ 3.55
RFK-204	ENST00000479197	ZCCHC6	Q5VYS8	1495 aa	Known RBP	36.11	■■■■□ 3.37
RFK-204	ENST00000479197	NACAD	O15069	1562 aa		35.98	■■■■□ 3.35
RFK-204	ENST00000479197	DCAF8L2	P0C7V8	631 aa		35.98	■■■■□ 3.35
RFK-204	ENST00000479197	RB1CC1	Q8TDY2	1594 aa		35.95	■■■■□ 3.35
RFK-204	ENST00000479197	MYO15B	Q96JP2	1530 aa		35.86	■■■■□ 3.33
RFK-204	ENST00000479197	DCAF1	Q9Y4B6	1507 aa		35.81	■■■■□ 3.32
RFK-204	ENST00000479197	UNC13A	Q9UPW8	1703 aa		35.19	■■■■□ 3.22
RFK-204	ENST00000479197	SCRIB	Q14160	1630 aa		35.02	■■■■□ 3.2
RFK-204	ENST00000479197	BICRA	Q9NZM4	1560 aa		34.85	■■■■□ 3.17
RFK-204	ENST00000479197	PABPN1	Q86U42	306 aa	Known RBP eCLIP	34.8	■■■■□ 3.16
RFK-204	ENST00000479197	SHROOM4	Q9ULL8	1493 aa		34.52	■■■■□ 3.12
RFK-204	ENST00000479197	EIF4G1	Q04637	1599 aa	Known RBP	33.92	■■■■□ 3.02
RFK-204	ENST00000479197	DNAJC5B	Q9UF47	199 aa		33.84	■■■■□ 3.01
RFK-204	ENST00000479197	CC2D2A	Q9P2K1	1620 aa		33.7	■■■□□ 2.99
RFK-204	ENST00000479197	CECR2	Q9BXF3	1484 aa		33.64	■■■□□ 2.98
RFK-204	ENST00000479197	SMARCA4	P51532	1647 aa		33.52	■■■□□ 2.96
RFK-204	ENST00000479197	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	33.52	■■■□□ 2.96
RFK-204	ENST00000479197	MROH2B	Q7Z745	1585 aa		33.33	■■■□□ 2.93
RFK-204	ENST00000479197	ATAD2B	Q9ULI0	1458 aa		33.24	■■■□□ 2.91
RFK-204	ENST00000479197	SMARCA2	P51531	1590 aa		33.23	■■■□□ 2.91
RFK-204	ENST00000479197	PEG3	Q9GZU2	1588 aa		33.19	■■■□□ 2.9
RFK-204	ENST00000479197	NCAPD3	P42695	1498 aa		33.17	■■■□□ 2.9
RFK-204	ENST00000479197	HMGXB3	Q12766	1538 aa		33.06	■■■□□ 2.88
RFK-204	ENST00000479197	RSF1	Q96T23	1441 aa	Predicted RBP	33.05	■■■□□ 2.88
RFK-204	ENST00000479197	WIZ	O95785	1651 aa		33.02	■■■□□ 2.88
RFK-204	ENST00000479197	BAZ1B	Q9UIG0	1483 aa	Known RBP	33	■■■□□ 2.87
RFK-204	ENST00000479197	TOP2A	P11388	1531 aa	Known RBP	32.68	■■■□□ 2.82
RFK-204	ENST00000479197	SUPT5H	O00267	1087 aa	Known RBP	32.41	■■■□□ 2.78
RFK-204	ENST00000479197	NES	P48681	1621 aa		32.29	■■■□□ 2.76
RFK-204	ENST00000479197	LAMC3	Q9Y6N6	1575 aa		32.28	■■■□□ 2.76
RFK-204	ENST00000479197	CCDC88B	A6NC98	1476 aa		32.26	■■■□□ 2.76
RFK-204	ENST00000479197	CADPS	Q9ULU8	1353 aa		32.21	■■■□□ 2.75
RFK-204	ENST00000479197	CFTR	P13569	1480 aa		32.1	■■■□□ 2.73
RFK-204	ENST00000479197	ERCC6	Q03468	1493 aa		32.07	■■■□□ 2.72
RFK-204	ENST00000479197	PDS5B	Q9NTI5	1447 aa		32.03	■■■□□ 2.72
RFK-204	ENST00000479197	KIF21A	Q7Z4S6	1674 aa		31.97	■■■□□ 2.71
RFK-204	ENST00000479197	PRDM2	Q13029	1718 aa		31.96	■■■□□ 2.71
RFK-204	ENST00000479197	FANCD2	Q9BXW9	1451 aa		31.86	■■■□□ 2.69
RFK-204	ENST00000479197	CEP164	Q9UPV0	1460 aa		31.81	■■■□□ 2.68
RFK-204	ENST00000479197	THOC2	Q8NI27	1593 aa	Known RBP	31.78	■■■□□ 2.68
RFK-204	ENST00000479197	MRC2	Q9UBG0	1479 aa		31.7	■■■□□ 2.66
RFK-204	ENST00000479197	CUX2	O14529	1486 aa		31.62	■■■□□ 2.65
RFK-204	ENST00000479197	WDR62	O43379	1518 aa		31.6	■■■□□ 2.65
RFK-204	ENST00000479197	URB2	Q14146	1524 aa	Known RBP	31.53	■■■□□ 2.64
RFK-204	ENST00000479197	ABCC8	Q09428	1581 aa		31.4	■■■□□ 2.62
RFK-204	ENST00000479197	TOPBP1	Q92547	1522 aa		31.39	■■■□□ 2.62
RFK-204	ENST00000479197	DNMBP	Q6XZF7	1577 aa		31.39	■■■□□ 2.62
RFK-204	ENST00000479197	CUX1	P39880	1505 aa		31.27	■■■□□ 2.6
RFK-204	ENST00000479197	WRN	Q14191	1432 aa	Predicted RBP eCLIP	31.16	■■■□□ 2.58
RFK-204	ENST00000479197	POLA1	P09884	1462 aa	Predicted RBP	31.15	■■■□□ 2.58
RFK-204	ENST00000479197	IFT140	Q96RY7	1462 aa		31.12	■■■□□ 2.57
RFK-204	ENST00000479197	FGD5	Q6ZNL6	1462 aa		31.11	■■■□□ 2.57
RFK-204	ENST00000479197	BIVM-ERCC5	R4GMW8	1640 aa		31.09	■■■□□ 2.57
RFK-204	ENST00000479197	SYNJ1	O43426	1573 aa		31.09	■■■□□ 2.57
RFK-204	ENST00000479197	TOP2B	Q02880	1626 aa		31.09	■■■□□ 2.57
RFK-204	ENST00000479197	TARBP1	Q13395	1621 aa	Known RBP	31.04	■■■□□ 2.56
RFK-204	ENST00000479197	SOGA1	O94964	1423 aa		31	■■■□□ 2.55
RFK-204	ENST00000479197	RAD54L2	Q9Y4B4	1467 aa		30.99	■■■□□ 2.55
RFK-204	ENST00000479197	ZNF608	Q9ULD9	1512 aa	Predicted RBP	30.95	■■■□□ 2.54
RFK-204	ENST00000479197	WDR97	A6NE52	1622 aa		30.88	■■■□□ 2.53
RFK-204	ENST00000479197	EIF4G3	O43432	1585 aa	Known RBP	30.88	■■■□□ 2.53
RFK-204	ENST00000479197	ABCA10	Q8WWZ4	1543 aa		30.82	■■■□□ 2.52
RFK-204	ENST00000479197	AQR	O60306	1485 aa	Known RBP eCLIP	30.8	■■■□□ 2.52	2e-6	■■■■□ 24.5
RFK-204	ENST00000479197	TDRD9	Q8NDG6	1382 aa	Known RBP	30.79	■■■□□ 2.52
RFK-204	ENST00000479197	ABCA5	Q8WWZ7	1642 aa		30.7	■■■□□ 2.51
RFK-204	ENST00000479197	GAPVD1	Q14C86	1478 aa		30.66	■■■□□ 2.5
RFK-204	ENST00000479197	PBRM1	Q86U86	1689 aa		30.63	■■■□□ 2.49
RFK-204	ENST00000479197	GRIN2B	Q13224	1484 aa		30.62	■■■□□ 2.49
RFK-204	ENST00000479197	TRIM41	Q8WV44	630 aa		30.6	■■■□□ 2.49
RFK-204	ENST00000479197	SNAPC4	Q5SXM2	1469 aa		30.55	■■■□□ 2.48
RFK-204	ENST00000479197	MAGI1	Q96QZ7	1491 aa	Predicted RBP	30.52	■■■□□ 2.48
RFK-204	ENST00000479197	KIF27	Q86VH2	1401 aa		30.49	■■■□□ 2.47
RFK-204	ENST00000479197	ERICH3	Q5RHP9	1530 aa		30.47	■■■□□ 2.47
RFK-204	ENST00000479197	CHD1	O14646	1710 aa		30.45	■■■□□ 2.46
RFK-204	ENST00000479197	CHIC1	Q5VXU3	224 aa		30.41	■■■□□ 2.46
RFK-204	ENST00000479197	SYNJ2	O15056	1496 aa		30.39	■■■□□ 2.46
RFK-204	ENST00000479197	ADAMTS12	P58397	1594 aa		30.39	■■■□□ 2.46
RFK-204	ENST00000479197	FBLN2	P98095	1184 aa		30.36	■■■□□ 2.45
RFK-204	ENST00000479197	OSCAR	Q8IYS5	282 aa		30.33	■■■□□ 2.45
RFK-204	ENST00000479197	CHMP7	Q8WUX9	453 aa	Predicted RBP	30.33	■■■□□ 2.45
RFK-204	ENST00000479197	FHAD1	B1AJZ9	1412 aa		30.32	■■■□□ 2.44
RFK-204	ENST00000479197	IGF1R	P08069	1367 aa		30.3	■■■□□ 2.44
RFK-204	ENST00000479197	RUSC2	Q8N2Y8	1516 aa		30.29	■■■□□ 2.44
RFK-204	ENST00000479197	CUL7	Q14999	1698 aa		30.27	■■■□□ 2.44
RFK-204	ENST00000479197	DNAJC5	Q9H3Z4	198 aa		30.27	■■■□□ 2.44
RFK-204	ENST00000479197	GRIN2A	Q12879	1464 aa		30.24	■■■□□ 2.43
RFK-204	ENST00000479197	CARMIL1	Q5VZK9	1371 aa		30.14	■■■□□ 2.42
RFK-204	ENST00000479197	EEA1	Q15075	1411 aa		30.1	■■■□□ 2.41
RFK-204	ENST00000479197	CLASP1	Q7Z460	1538 aa		30.09	■■■□□ 2.41
RFK-204	ENST00000479197	NUP160	Q12769	1436 aa		30.08	■■■□□ 2.41
RFK-204	ENST00000479197	CEP170	Q5SW79	1584 aa		30.08	■■■□□ 2.41
RFK-204	ENST00000479197	RAPGEF2	Q9Y4G8	1499 aa		30.01	■■■□□ 2.4
RFK-204	ENST00000479197	CSRNP3	Q8WYN3	585 aa		29.99	■■■□□ 2.39
RFK-204	ENST00000479197	PRX	Q9BXM0	1461 aa		29.98	■■■□□ 2.39
RFK-204	ENST00000479197	FAM9A	Q8IZU1	332 aa	Predicted RBP	29.95	■■■□□ 2.38
RFK-204	ENST00000479197	ARHGEF11	O15085	1522 aa		29.88	■■■□□ 2.37
RFK-204	ENST00000479197	KIAA0586	Q9BVV6	1533 aa		29.86	■■■□□ 2.37

Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms