RNA–Protein interactions for RNA: ENST00000477299.5

COPS3-207, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 656 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-207ENST00000477299 NISCHQ9Y2I1 1504 aa38.06■■■■□ 3.68
COPS3-207ENST00000477299 CCDC180Q9P1Z9 1646 aa33.63■■■□□ 2.97
COPS3-207ENST00000477299 ABCC9O60706 1549 aa32.72■■■□□ 2.83
COPS3-207ENST00000477299 DCAF8L2P0C7V8 631 aa31.78■■■□□ 2.68
COPS3-207ENST00000477299 ZCCHC6Q5VYS8 1495 aaKnown RBP31.75■■■□□ 2.67
COPS3-207ENST00000477299 NACADO15069 1562 aa31.51■■■□□ 2.64
COPS3-207ENST00000477299 RB1CC1Q8TDY2 1594 aa31.48■■■□□ 2.63
COPS3-207ENST00000477299 DCAF1Q9Y4B6 1507 aa31.39■■■□□ 2.62
COPS3-207ENST00000477299 MYO15BQ96JP2 1530 aa31.35■■■□□ 2.61
COPS3-207ENST00000477299 UNC13AQ9UPW8 1703 aa30.99■■■□□ 2.55
COPS3-207ENST00000477299 SCRIBQ14160 1630 aa30.84■■■□□ 2.53
COPS3-207ENST00000477299 PABPN1Q86U42 306 aaKnown RBP eCLIP30.69■■■□□ 2.5
COPS3-207ENST00000477299 BICRAQ9NZM4 1560 aa30.66■■■□□ 2.5
COPS3-207ENST00000477299 SHROOM4Q9ULL8 1493 aa30.43■■■□□ 2.46
COPS3-207ENST00000477299 DNAJC5BQ9UF47 199 aa29.85■■■□□ 2.37
COPS3-207ENST00000477299 EIF4G1Q04637 1599 aaKnown RBP29.75■■■□□ 2.35
COPS3-207ENST00000477299 CECR2Q9BXF3 1484 aa29.72■■■□□ 2.35
COPS3-207ENST00000477299 CC2D2AQ9P2K1 1620 aa29.59■■■□□ 2.33
COPS3-207ENST00000477299 SMARCA4P51532 1647 aa29.48■■■□□ 2.31
COPS3-207ENST00000477299 MROH2BQ7Z745 1585 aa29.41■■■□□ 2.3
COPS3-207ENST00000477299 BAZ1AQ9NRL2 1556 aaPredicted RBP29.41■■■□□ 2.3
COPS3-207ENST00000477299 ATAD2BQ9ULI0 1458 aa29.21■■■□□ 2.27
COPS3-207ENST00000477299 WIZO95785 1651 aa29.16■■■□□ 2.26
COPS3-207ENST00000477299 RSF1Q96T23 1441 aaPredicted RBP29.16■■■□□ 2.26
COPS3-207ENST00000477299 SMARCA2P51531 1590 aa29.12■■■□□ 2.25
COPS3-207ENST00000477299 PEG3Q9GZU2 1588 aa29.11■■■□□ 2.25
COPS3-207ENST00000477299 NCAPD3P42695 1498 aa29.1■■■□□ 2.25
COPS3-207ENST00000477299 BAZ1BQ9UIG0 1483 aaKnown RBP28.97■■■□□ 2.23
COPS3-207ENST00000477299 HMGXB3Q12766 1538 aa28.96■■■□□ 2.23
COPS3-207ENST00000477299 SUPT5HO00267 1087 aaKnown RBP28.77■■■□□ 2.2
COPS3-207ENST00000477299 TOP2AP11388 1531 aaKnown RBP28.73■■■□□ 2.19
COPS3-207ENST00000477299 NESP48681 1621 aa28.47■■■□□ 2.15
COPS3-207ENST00000477299 CCDC88BA6NC98 1476 aa28.46■■■□□ 2.15
COPS3-207ENST00000477299 CADPSQ9ULU8 1353 aa28.28■■■□□ 2.12
COPS3-207ENST00000477299 LAMC3Q9Y6N6 1575 aa28.26■■■□□ 2.11
COPS3-207ENST00000477299 CFTRP13569 1480 aa28.19■■■□□ 2.1
COPS3-207ENST00000477299 KIF21AQ7Z4S6 1674 aa28.13■■■□□ 2.09
COPS3-207ENST00000477299 ERCC6Q03468 1493 aa28.07■■■□□ 2.08
COPS3-207ENST00000477299 PRDM2Q13029 1718 aa28.06■■■□□ 2.08
COPS3-207ENST00000477299 PDS5BQ9NTI5 1447 aa28.03■■■□□ 2.08
COPS3-207ENST00000477299 FANCD2Q9BXW9 1451 aa27.98■■■□□ 2.07
COPS3-207ENST00000477299 CEP164Q9UPV0 1460 aa27.88■■■□□ 2.05
COPS3-207ENST00000477299 THOC2Q8NI27 1593 aaKnown RBP27.86■■■□□ 2.05
COPS3-207ENST00000477299 MRC2Q9UBG0 1479 aa27.77■■■□□ 2.04
COPS3-207ENST00000477299 URB2Q14146 1524 aaKnown RBP27.74■■■□□ 2.03
COPS3-207ENST00000477299 WDR62O43379 1518 aa27.68■■■□□ 2.02
COPS3-207ENST00000477299 TOPBP1Q92547 1522 aa27.6■■■□□ 2.01
COPS3-207ENST00000477299 ABCC8Q09428 1581 aa27.6■■■□□ 2.01
COPS3-207ENST00000477299 CUX2O14529 1486 aa27.58■■■□□ 2.01
COPS3-207ENST00000477299 CUX1P39880 1505 aa27.56■■■□□ 2
COPS3-207ENST00000477299 DNMBPQ6XZF7 1577 aa27.56■■■□□ 2
COPS3-207ENST00000477299 SYNJ1O43426 1573 aa27.44■■□□□ 1.98
COPS3-207ENST00000477299 WRNQ14191 1432 aaPredicted RBP eCLIP27.43■■□□□ 1.98
COPS3-207ENST00000477299 POLA1P09884 1462 aaPredicted RBP27.38■■□□□ 1.97
COPS3-207ENST00000477299 FGD5Q6ZNL6 1462 aa27.38■■□□□ 1.97
COPS3-207ENST00000477299 BIVM-ERCC5R4GMW8 1640 aa27.36■■□□□ 1.97
COPS3-207ENST00000477299 TOP2BQ02880 1626 aa27.35■■□□□ 1.97
COPS3-207ENST00000477299 RAD54L2Q9Y4B4 1467 aa27.34■■□□□ 1.97
COPS3-207ENST00000477299 TARBP1Q13395 1621 aaKnown RBP27.3■■□□□ 1.96
COPS3-207ENST00000477299 IFT140Q96RY7 1462 aa27.26■■□□□ 1.95
COPS3-207ENST00000477299 SOGA1O94964 1423 aa27.26■■□□□ 1.95
COPS3-207ENST00000477299 ZNF608Q9ULD9 1512 aaPredicted RBP27.26■■□□□ 1.95
COPS3-207ENST00000477299 DNAJC5Q9H3Z4 198 aa27.22■■□□□ 1.95
COPS3-207ENST00000477299 WDR97A6NE52 1622 aa27.16■■□□□ 1.94
COPS3-207ENST00000477299 TDRD9Q8NDG6 1382 aaKnown RBP27.14■■□□□ 1.94
COPS3-207ENST00000477299 AQRO60306 1485 aaKnown RBP eCLIP27.13■■□□□ 1.93
COPS3-207ENST00000477299 EIF4G3O43432 1585 aaKnown RBP27.1■■□□□ 1.93
COPS3-207ENST00000477299 ABCA10Q8WWZ4 1543 aa27.07■■□□□ 1.92
COPS3-207ENST00000477299 TRIM41Q8WV44 630 aa27.06■■□□□ 1.92
COPS3-207ENST00000477299 CHIC1Q5VXU3 224 aa27.04■■□□□ 1.92
COPS3-207ENST00000477299 ABCA5Q8WWZ7 1642 aa26.98■■□□□ 1.91
COPS3-207ENST00000477299 GAPVD1Q14C86 1478 aa26.94■■□□□ 1.9
COPS3-207ENST00000477299 PBRM1Q86U86 1689 aa26.93■■□□□ 1.9
COPS3-207ENST00000477299 RUSC2Q8N2Y8 1516 aa26.88■■□□□ 1.89
COPS3-207ENST00000477299 GRIN2BQ13224 1484 aa26.86■■□□□ 1.89
COPS3-207ENST00000477299 SNAPC4Q5SXM2 1469 aa26.83■■□□□ 1.89
COPS3-207ENST00000477299 KIF27Q86VH2 1401 aa26.79■■□□□ 1.88
COPS3-207ENST00000477299 CHD1O14646 1710 aa26.77■■□□□ 1.88
COPS3-207ENST00000477299 FBLN2P98095 1184 aa26.73■■□□□ 1.87
COPS3-207ENST00000477299 ERICH3Q5RHP9 1530 aa26.73■■□□□ 1.87
COPS3-207ENST00000477299 IGF1RP08069 1367 aa26.72■■□□□ 1.87
COPS3-207ENST00000477299 MAGI1Q96QZ7 1491 aaPredicted RBP26.72■■□□□ 1.87
COPS3-207ENST00000477299 ADAMTS12P58397 1594 aa26.68■■□□□ 1.86
COPS3-207ENST00000477299 CHMP7Q8WUX9 453 aaPredicted RBP26.65■■□□□ 1.86
COPS3-207ENST00000477299 SYNJ2O15056 1496 aa26.65■■□□□ 1.86
COPS3-207ENST00000477299 FAM9AQ8IZU1 332 aaPredicted RBP26.63■■□□□ 1.85
COPS3-207ENST00000477299 FHAD1B1AJZ9 1412 aa26.6■■□□□ 1.85
COPS3-207ENST00000477299 OSCARQ8IYS5 282 aa26.58■■□□□ 1.85
COPS3-207ENST00000477299 CUL7Q14999 1698 aa26.56■■□□□ 1.84
COPS3-207ENST00000477299 CARMIL1Q5VZK9 1371 aa26.55■■□□□ 1.84
COPS3-207ENST00000477299 GRIN2AQ12879 1464 aa26.54■■□□□ 1.84
COPS3-207ENST00000477299 CSRNP3Q8WYN3 585 aa26.5■■□□□ 1.83
COPS3-207ENST00000477299 CEP170Q5SW79 1584 aa26.46■■□□□ 1.83
COPS3-207ENST00000477299 EEA1Q15075 1411 aa26.43■■□□□ 1.82
COPS3-207ENST00000477299 PRXQ9BXM0 1461 aa26.42■■□□□ 1.82
COPS3-207ENST00000477299 RAPGEF2Q9Y4G8 1499 aa26.4■■□□□ 1.82
COPS3-207ENST00000477299 NUP160Q12769 1436 aa26.39■■□□□ 1.82
COPS3-207ENST00000477299 CLASP1Q7Z460 1538 aa26.39■■□□□ 1.82
COPS3-207ENST00000477299 EHMT2Q96KQ7 1210 aa26.34■■□□□ 1.81
COPS3-207ENST00000477299 KIF21BO75037 1637 aa26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 138.2 ms