RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 NISCHQ9Y2I1 1504 aa35.99■■■■□ 3.35
TMEM53-208ENST00000476724 CCDC180Q9P1Z9 1646 aa31.29■■■□□ 2.6
TMEM53-208ENST00000476724 ZCCHC6Q5VYS8 1495 aaKnown RBP30.26■■■□□ 2.43
TMEM53-208ENST00000476724 DCAF8L2P0C7V8 631 aa29.79■■■□□ 2.36
TMEM53-208ENST00000476724 DCAF1Q9Y4B6 1507 aa29.67■■■□□ 2.34
TMEM53-208ENST00000476724 ABCC9O60706 1549 aa29.62■■■□□ 2.33
TMEM53-208ENST00000476724 SHROOM4Q9ULL8 1493 aa29.58■■■□□ 2.33
TMEM53-208ENST00000476724 MYO15BQ96JP2 1530 aa29.25■■■□□ 2.27
TMEM53-208ENST00000476724 NACADO15069 1562 aa29.1■■■□□ 2.25
TMEM53-208ENST00000476724 SCRIBQ14160 1630 aa28.91■■■□□ 2.22
TMEM53-208ENST00000476724 RB1CC1Q8TDY2 1594 aa28.85■■■□□ 2.21
TMEM53-208ENST00000476724 SUPT5HO00267 1087 aaKnown RBP28.51■■■□□ 2.15
TMEM53-208ENST00000476724 UNC13AQ9UPW8 1703 aa28.42■■■□□ 2.14
TMEM53-208ENST00000476724 BICRAQ9NZM4 1560 aa28.07■■■□□ 2.08
TMEM53-208ENST00000476724 CECR2Q9BXF3 1484 aa28.05■■■□□ 2.08
TMEM53-208ENST00000476724 RSF1Q96T23 1441 aaPredicted RBP27.98■■■□□ 2.07
TMEM53-208ENST00000476724 PABPN1Q86U42 306 aaKnown RBP eCLIP27.98■■■□□ 2.07
TMEM53-208ENST00000476724 MROH2BQ7Z745 1585 aa27.88■■■□□ 2.05
TMEM53-208ENST00000476724 BAZ1AQ9NRL2 1556 aaPredicted RBP27.75■■■□□ 2.03
TMEM53-208ENST00000476724 CHIC1Q5VXU3 224 aa27.75■■■□□ 2.03
TMEM53-208ENST00000476724 WIZO95785 1651 aa27.69■■■□□ 2.02
TMEM53-208ENST00000476724 SMARCA4P51532 1647 aa27.67■■■□□ 2.02
TMEM53-208ENST00000476724 TOP2AP11388 1531 aaKnown RBP27.3■■□□□ 1.96
TMEM53-208ENST00000476724 PEG3Q9GZU2 1588 aa27.27■■□□□ 1.96
TMEM53-208ENST00000476724 EIF4G1Q04637 1599 aaKnown RBP27.18■■□□□ 1.94
TMEM53-208ENST00000476724 ATAD2BQ9ULI0 1458 aa27.17■■□□□ 1.94
TMEM53-208ENST00000476724 SMARCA2P51531 1590 aa27.1■■□□□ 1.93
TMEM53-208ENST00000476724 CCDC88BA6NC98 1476 aa27.07■■□□□ 1.92
TMEM53-208ENST00000476724 BAZ1BQ9UIG0 1483 aaKnown RBP27.01■■□□□ 1.92
TMEM53-208ENST00000476724 NCAPD3P42695 1498 aa26.88■■□□□ 1.89
TMEM53-208ENST00000476724 HMGXB3Q12766 1538 aa26.84■■□□□ 1.89
TMEM53-208ENST00000476724 CC2D2AQ9P2K1 1620 aa26.78■■□□□ 1.88
TMEM53-208ENST00000476724 LOC105371045A0A1W2PR82 267 aa26.75■■□□□ 1.87
TMEM53-208ENST00000476724 TRIM41Q8WV44 630 aa26.74■■□□□ 1.87
TMEM53-208ENST00000476724 ABCC8Q09428 1581 aa26.61■■□□□ 1.85
TMEM53-208ENST00000476724 PCGF6Q9BYE7 350 aa26.5■■□□□ 1.83
TMEM53-208ENST00000476724 HRCP23327 699 aa26.46■■□□□ 1.83
TMEM53-208ENST00000476724 CFTRP13569 1480 aa26.33■■□□□ 1.81
TMEM53-208ENST00000476724 WRNQ14191 1432 aaPredicted RBP eCLIP26.32■■□□□ 1.8
TMEM53-208ENST00000476724 FAM9AQ8IZU1 332 aaPredicted RBP26.32■■□□□ 1.8
TMEM53-208ENST00000476724 TRIM26Q12899 539 aaPredicted RBP26.27■■□□□ 1.8
TMEM53-208ENST00000476724 SYNJ1O43426 1573 aa26.27■■□□□ 1.8
TMEM53-208ENST00000476724 PRDM2Q13029 1718 aa26.23■■□□□ 1.79
TMEM53-208ENST00000476724 CADPSQ9ULU8 1353 aa26.21■■□□□ 1.79
TMEM53-208ENST00000476724 DNAJC5BQ9UF47 199 aa26.21■■□□□ 1.79
TMEM53-208ENST00000476724 SOGA1O94964 1423 aa26.1■■□□□ 1.77
TMEM53-208ENST00000476724 TOP2BQ02880 1626 aa26.1■■□□□ 1.77
TMEM53-208ENST00000476724 BIVM-ERCC5R4GMW8 1640 aa26.07■■□□□ 1.76
TMEM53-208ENST00000476724 NESP48681 1621 aa26.07■■□□□ 1.76
TMEM53-208ENST00000476724 RUSC2Q8N2Y8 1516 aa26.05■■□□□ 1.76
TMEM53-208ENST00000476724 CUX1P39880 1505 aa26.04■■□□□ 1.76
TMEM53-208ENST00000476724 EHMT2Q96KQ7 1210 aa26.02■■□□□ 1.76
TMEM53-208ENST00000476724 FANCD2Q9BXW9 1451 aa25.95■■□□□ 1.74
TMEM53-208ENST00000476724 LAMC3Q9Y6N6 1575 aa25.95■■□□□ 1.74
TMEM53-208ENST00000476724 EEA1Q15075 1411 aa25.9■■□□□ 1.74
TMEM53-208ENST00000476724 CSRNP3Q8WYN3 585 aa25.84■■□□□ 1.73
TMEM53-208ENST00000476724 CEP164Q9UPV0 1460 aa25.76■■□□□ 1.71
TMEM53-208ENST00000476724 KIF21AQ7Z4S6 1674 aa25.74■■□□□ 1.71
TMEM53-208ENST00000476724 FGD5Q6ZNL6 1462 aa25.73■■□□□ 1.71
TMEM53-208ENST00000476724 DNMBPQ6XZF7 1577 aa25.72■■□□□ 1.71
TMEM53-208ENST00000476724 ZEB1P37275 1124 aaPredicted RBP25.72■■□□□ 1.71
TMEM53-208ENST00000476724 PDS5BQ9NTI5 1447 aa25.72■■□□□ 1.71
TMEM53-208ENST00000476724 TOPBP1Q92547 1522 aa25.69■■□□□ 1.7
TMEM53-208ENST00000476724 PPARGC1BQ86YN6 1023 aaKnown RBP25.68■■□□□ 1.7
TMEM53-208ENST00000476724 TNIKQ9UKE5 1360 aa25.68■■□□□ 1.7
TMEM53-208ENST00000476724 URB2Q14146 1524 aaKnown RBP25.66■■□□□ 1.7
TMEM53-208ENST00000476724 KIF21BO75037 1637 aa25.64■■□□□ 1.7
TMEM53-208ENST00000476724 GOLGA3Q08378 1498 aa25.63■■□□□ 1.69
TMEM53-208ENST00000476724 KIF27Q86VH2 1401 aa25.61■■□□□ 1.69
TMEM53-208ENST00000476724 CEP162Q5TB80 1403 aa25.59■■□□□ 1.69
TMEM53-208ENST00000476724 POLA1P09884 1462 aaPredicted RBP25.59■■□□□ 1.69
TMEM53-208ENST00000476724 CUX2O14529 1486 aa25.57■■□□□ 1.68
TMEM53-208ENST00000476724 RAD54L2Q9Y4B4 1467 aa25.55■■□□□ 1.68
TMEM53-208ENST00000476724 UBTFP17480 764 aaKnown RBP25.55■■□□□ 1.68
TMEM53-208ENST00000476724 RAPGEF2Q9Y4G8 1499 aa25.55■■□□□ 1.68
TMEM53-208ENST00000476724 PRXQ9BXM0 1461 aa25.49■■□□□ 1.67
TMEM53-208ENST00000476724 ABCA10Q8WWZ4 1543 aa25.46■■□□□ 1.67
TMEM53-208ENST00000476724 ERICH3Q5RHP9 1530 aa25.42■■□□□ 1.66
TMEM53-208ENST00000476724 WDR97A6NE52 1622 aa25.42■■□□□ 1.66
TMEM53-208ENST00000476724 MRC2Q9UBG0 1479 aa25.42■■□□□ 1.66
TMEM53-208ENST00000476724 IGF1RP08069 1367 aa25.41■■□□□ 1.66
TMEM53-208ENST00000476724 ERCC6Q03468 1493 aa25.32■■□□□ 1.64
TMEM53-208ENST00000476724 TARBP1Q13395 1621 aaKnown RBP25.32■■□□□ 1.64
TMEM53-208ENST00000476724 WDR62O43379 1518 aa25.3■■□□□ 1.64
TMEM53-208ENST00000476724 ABCA5Q8WWZ7 1642 aa25.28■■□□□ 1.64
TMEM53-208ENST00000476724 CARMIL1Q5VZK9 1371 aa25.28■■□□□ 1.64
TMEM53-208ENST00000476724 TDRD9Q8NDG6 1382 aaKnown RBP25.28■■□□□ 1.64
TMEM53-208ENST00000476724 CLIP1P30622 1438 aa25.24■■□□□ 1.63
TMEM53-208ENST00000476724 THOC2Q8NI27 1593 aaKnown RBP25.24■■□□□ 1.63
TMEM53-208ENST00000476724 RANGAP1P46060 587 aaPredicted RBP25.22■■□□□ 1.63
TMEM53-208ENST00000476724 GAPVD1Q14C86 1478 aa25.2■■□□□ 1.62
TMEM53-208ENST00000476724 CUL7Q14999 1698 aa25.18■■□□□ 1.62
TMEM53-208ENST00000476724 AQRO60306 1485 aaKnown RBP eCLIP25.11■■□□□ 1.61
TMEM53-208ENST00000476724 IFT140Q96RY7 1462 aa25.11■■□□□ 1.61
TMEM53-208ENST00000476724 PBRM1Q86U86 1689 aa25.1■■□□□ 1.61
TMEM53-208ENST00000476724 VPS8Q8N3P4 1428 aa25.1■■□□□ 1.61
TMEM53-208ENST00000476724 CCER1Q8TC90 406 aaPredicted RBP25.09■■□□□ 1.61
TMEM53-208ENST00000476724 ZNF608Q9ULD9 1512 aaPredicted RBP25.08■■□□□ 1.61
TMEM53-208ENST00000476724 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.06■■□□□ 1.6
TMEM53-208ENST00000476724 ARAP1Q96P48 1450 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 256.3 ms