RNA–Protein interactions for RNA: ENST00000474851.1

LSAMP-203, Transcript of limbic system associated membrane protein, humanhuman

TSL 5

Gene LSAMP, Length 772 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-203ENST00000474851 NISCHQ9Y2I1 1504 aa17.6■□□□□ 0.41
LSAMP-203ENST00000474851 AEBP2Q6ZN18 517 aaPredicted RBP17.16■□□□□ 0.34
LSAMP-203ENST00000474851 CHIC1Q5VXU3 224 aa15.88■□□□□ 0.13
LSAMP-203ENST00000474851 CCDC180Q9P1Z9 1646 aa15.5■□□□□ 0.07
LSAMP-203ENST00000474851 ABCC9O60706 1549 aa15.49■□□□□ 0.07
LSAMP-203ENST00000474851 DCAF8L2P0C7V8 631 aa14.86□□□□□ -0.03
LSAMP-203ENST00000474851 NACADO15069 1562 aa14.74□□□□□ -0.05
LSAMP-203ENST00000474851 RB1CC1Q8TDY2 1594 aa14.74□□□□□ -0.05
LSAMP-203ENST00000474851 MYO15BQ96JP2 1530 aa14.65□□□□□ -0.06
LSAMP-203ENST00000474851 ZCCHC6Q5VYS8 1495 aaKnown RBP14.62□□□□□ -0.07
LSAMP-203ENST00000474851 PABPN1Q86U42 306 aaKnown RBP eCLIP14.57□□□□□ -0.08
LSAMP-203ENST00000474851 SENP3Q9H4L4 574 aaPredicted RBP14.57□□□□□ -0.08
LSAMP-203ENST00000474851 DCAF1Q9Y4B6 1507 aa14.54□□□□□ -0.08
LSAMP-203ENST00000474851 DNAJC5BQ9UF47 199 aa14.51□□□□□ -0.09
LSAMP-203ENST00000474851 PHF23Q9BUL5 403 aaPredicted RBP14.37□□□□□ -0.11
LSAMP-203ENST00000474851 BICRAQ9NZM4 1560 aa14.36□□□□□ -0.11
LSAMP-203ENST00000474851 UNC13AQ9UPW8 1703 aa14.22□□□□□ -0.13
LSAMP-203ENST00000474851 SCRIBQ14160 1630 aa14.21□□□□□ -0.13
LSAMP-203ENST00000474851 SHROOM4Q9ULL8 1493 aa14.17□□□□□ -0.14
LSAMP-203ENST00000474851 EIF4G1Q04637 1599 aaKnown RBP13.97□□□□□ -0.17
LSAMP-203ENST00000474851 CECR2Q9BXF3 1484 aa13.94□□□□□ -0.18
LSAMP-203ENST00000474851 CC2D2AQ9P2K1 1620 aa13.93□□□□□ -0.18
LSAMP-203ENST00000474851 FOXD1Q16676 465 aa13.72□□□□□ -0.21
LSAMP-203ENST00000474851 NCAPD3P42695 1498 aa13.71□□□□□ -0.21
LSAMP-203ENST00000474851 ATAD2BQ9ULI0 1458 aa13.68□□□□□ -0.22
LSAMP-203ENST00000474851 SMARCA4P51532 1647 aa13.59□□□□□ -0.23
LSAMP-203ENST00000474851 BAZ1AQ9NRL2 1556 aaPredicted RBP13.58□□□□□ -0.23
LSAMP-203ENST00000474851 MROH2BQ7Z745 1585 aa13.57□□□□□ -0.24
LSAMP-203ENST00000474851 SMARCA2P51531 1590 aa13.56□□□□□ -0.24
LSAMP-203ENST00000474851 HMGXB3Q12766 1538 aa13.51□□□□□ -0.25
LSAMP-203ENST00000474851 PEG3Q9GZU2 1588 aa13.5□□□□□ -0.25
LSAMP-203ENST00000474851 BAZ1BQ9UIG0 1483 aaKnown RBP13.49□□□□□ -0.25
LSAMP-203ENST00000474851 RSF1Q96T23 1441 aaPredicted RBP13.44□□□□□ -0.26
LSAMP-203ENST00000474851 POTEDQ86YR6 584 aa13.43□□□□□ -0.26
LSAMP-203ENST00000474851 NESP48681 1621 aa13.38□□□□□ -0.27
LSAMP-203ENST00000474851 ERCC6Q03468 1493 aa13.32□□□□□ -0.28
LSAMP-203ENST00000474851 CADPSQ9ULU8 1353 aa13.32□□□□□ -0.28
LSAMP-203ENST00000474851 WIZO95785 1651 aa13.31□□□□□ -0.28
LSAMP-203ENST00000474851 PDS5BQ9NTI5 1447 aa13.24□□□□□ -0.29
LSAMP-203ENST00000474851 CUX2O14529 1486 aa13.23□□□□□ -0.29
LSAMP-203ENST00000474851 LAMC3Q9Y6N6 1575 aa13.22□□□□□ -0.29
LSAMP-203ENST00000474851 TOP2AP11388 1531 aaKnown RBP13.2□□□□□ -0.3
LSAMP-203ENST00000474851 CFTRP13569 1480 aa13.18□□□□□ -0.3
LSAMP-203ENST00000474851 CCDC88BA6NC98 1476 aa13.14□□□□□ -0.31
LSAMP-203ENST00000474851 DNAJC5Q9H3Z4 198 aa13.13□□□□□ -0.31
LSAMP-203ENST00000474851 FANCD2Q9BXW9 1451 aa13.1□□□□□ -0.31
LSAMP-203ENST00000474851 THOC2Q8NI27 1593 aaKnown RBP13.08□□□□□ -0.32
LSAMP-203ENST00000474851 MRC2Q9UBG0 1479 aa13.08□□□□□ -0.32
LSAMP-203ENST00000474851 CEP164Q9UPV0 1460 aa13.05□□□□□ -0.32
LSAMP-203ENST00000474851 SUPT5HO00267 1087 aaKnown RBP13.02□□□□□ -0.33
LSAMP-203ENST00000474851 WDR62O43379 1518 aa13.01□□□□□ -0.33
LSAMP-203ENST00000474851 KIF21AQ7Z4S6 1674 aa13.01□□□□□ -0.33
LSAMP-203ENST00000474851 URB2Q14146 1524 aaKnown RBP12.98□□□□□ -0.33
LSAMP-203ENST00000474851 MSH5O43196 834 aa12.89□□□□□ -0.35
LSAMP-203ENST00000474851 TOPBP1Q92547 1522 aa12.86□□□□□ -0.35
LSAMP-203ENST00000474851 ABCC8Q09428 1581 aa12.84□□□□□ -0.35
LSAMP-203ENST00000474851 IFT140Q96RY7 1462 aa12.82□□□□□ -0.36
LSAMP-203ENST00000474851 ZNF608Q9ULD9 1512 aaPredicted RBP12.81□□□□□ -0.36
LSAMP-203ENST00000474851 OSCARQ8IYS5 282 aa12.78□□□□□ -0.36
LSAMP-203ENST00000474851 DNMBPQ6XZF7 1577 aa12.77□□□□□ -0.37
LSAMP-203ENST00000474851 POLA1P09884 1462 aaPredicted RBP12.76□□□□□ -0.37
LSAMP-203ENST00000474851 SOGA1O94964 1423 aa12.75□□□□□ -0.37
LSAMP-203ENST00000474851 AQRO60306 1485 aaKnown RBP eCLIP12.74□□□□□ -0.37
LSAMP-203ENST00000474851 RAD54L2Q9Y4B4 1467 aa12.74□□□□□ -0.37
LSAMP-203ENST00000474851 CUX1P39880 1505 aa12.72□□□□□ -0.37
LSAMP-203ENST00000474851 TDRD9Q8NDG6 1382 aaKnown RBP12.72□□□□□ -0.37
LSAMP-203ENST00000474851 PRDM2Q13029 1718 aa12.71□□□□□ -0.38
LSAMP-203ENST00000474851 PIAS4Q8N2W9 510 aaPredicted RBP12.7□□□□□ -0.38
LSAMP-203ENST00000474851 FGD5Q6ZNL6 1462 aa12.69□□□□□ -0.38
LSAMP-203ENST00000474851 TARBP1Q13395 1621 aaKnown RBP12.67□□□□□ -0.38
LSAMP-203ENST00000474851 FBLN2P98095 1184 aa12.62□□□□□ -0.39
LSAMP-203ENST00000474851 WRNQ14191 1432 aaPredicted RBP eCLIP12.62□□□□□ -0.39
LSAMP-203ENST00000474851 EIF4G3O43432 1585 aaKnown RBP12.6□□□□□ -0.39
LSAMP-203ENST00000474851 PLPPR3Q6T4P5 718 aa12.59□□□□□ -0.39
LSAMP-203ENST00000474851 CHMP7Q8WUX9 453 aaPredicted RBP12.58□□□□□ -0.4
LSAMP-203ENST00000474851 TRIM41Q8WV44 630 aa12.58□□□□□ -0.4
LSAMP-203ENST00000474851 ABCA10Q8WWZ4 1543 aa12.57□□□□□ -0.4
LSAMP-203ENST00000474851 GRIN2BQ13224 1484 aa12.57□□□□□ -0.4
LSAMP-203ENST00000474851 GAPVD1Q14C86 1478 aa12.56□□□□□ -0.4
LSAMP-203ENST00000474851 SNAPC4Q5SXM2 1469 aa12.55□□□□□ -0.4
LSAMP-203ENST00000474851 PPP6R1Q9UPN7 881 aa12.54□□□□□ -0.4
LSAMP-203ENST00000474851 MAGI1Q96QZ7 1491 aaPredicted RBP12.52□□□□□ -0.41
LSAMP-203ENST00000474851 SYNJ1O43426 1573 aa12.52□□□□□ -0.41
LSAMP-203ENST00000474851 WDR97A6NE52 1622 aa12.51□□□□□ -0.41
LSAMP-203ENST00000474851 TOP2BQ02880 1626 aa12.51□□□□□ -0.41
LSAMP-203ENST00000474851 SYNJ2O15056 1496 aa12.49□□□□□ -0.41
LSAMP-203ENST00000474851 CYB5RLQ6IPT4 315 aa12.48□□□□□ -0.41
LSAMP-203ENST00000474851 ADRA2BP18089 450 aa12.47□□□□□ -0.41
LSAMP-203ENST00000474851 ARHGEF11O15085 1522 aa12.46□□□□□ -0.42
LSAMP-203ENST00000474851 BIVM-ERCC5R4GMW8 1640 aa12.45□□□□□ -0.42
LSAMP-203ENST00000474851 ABCA5Q8WWZ7 1642 aa12.44□□□□□ -0.42
LSAMP-203ENST00000474851 IGF1RP08069 1367 aa12.43□□□□□ -0.42
LSAMP-203ENST00000474851 FHAD1B1AJZ9 1412 aa12.43□□□□□ -0.42
LSAMP-203ENST00000474851 CLASP1Q7Z460 1538 aa12.4□□□□□ -0.42
LSAMP-203ENST00000474851 RIMBP3CA6NJZ7 1639 aa12.4□□□□□ -0.42
LSAMP-203ENST00000474851 RIMBP3BA6NNM3 1639 aa12.4□□□□□ -0.42
LSAMP-203ENST00000474851 RIMBP3Q9UFD9 1639 aa12.4□□□□□ -0.42
LSAMP-203ENST00000474851 NUP160Q12769 1436 aa12.39□□□□□ -0.43
LSAMP-203ENST00000474851 GRIN2AQ12879 1464 aa12.39□□□□□ -0.43
LSAMP-203ENST00000474851 ERICH3Q5RHP9 1530 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms