RNA–Protein interactions for RNA: ENST00000474648.5

COL8A1-206, Transcript of collagen type VIII alpha 1 chain, humanhuman

TSL 5

Gene COL8A1, Length 841 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-206ENST00000474648 AEBP2Q6ZN18 517 aaPredicted RBP23.82■■□□□ 1.4
COL8A1-206ENST00000474648 NISCHQ9Y2I1 1504 aa23.59■■□□□ 1.37
COL8A1-206ENST00000474648 CHIC1Q5VXU3 224 aa23■■□□□ 1.27
COL8A1-206ENST00000474648 CCDC180Q9P1Z9 1646 aa20.67■□□□□ 0.9
COL8A1-206ENST00000474648 PHF23Q9BUL5 403 aaPredicted RBP20.25■□□□□ 0.83
COL8A1-206ENST00000474648 SENP3Q9H4L4 574 aaPredicted RBP20.17■□□□□ 0.82
COL8A1-206ENST00000474648 ABCC9O60706 1549 aa19.99■□□□□ 0.79
COL8A1-206ENST00000474648 ZCCHC6Q5VYS8 1495 aaKnown RBP19.71■□□□□ 0.75
COL8A1-206ENST00000474648 DCAF8L2P0C7V8 631 aa19.62■□□□□ 0.73
COL8A1-206ENST00000474648 DCAF1Q9Y4B6 1507 aa19.51■□□□□ 0.71
COL8A1-206ENST00000474648 MYO15BQ96JP2 1530 aa19.45■□□□□ 0.7
COL8A1-206ENST00000474648 NACADO15069 1562 aa19.42■□□□□ 0.7
COL8A1-206ENST00000474648 RB1CC1Q8TDY2 1594 aa19.32■□□□□ 0.68
COL8A1-206ENST00000474648 SCRIBQ14160 1630 aa18.95■□□□□ 0.62
COL8A1-206ENST00000474648 SHROOM4Q9ULL8 1493 aa18.9■□□□□ 0.62
COL8A1-206ENST00000474648 PABPN1Q86U42 306 aaKnown RBP eCLIP18.83■□□□□ 0.6
COL8A1-206ENST00000474648 UNC13AQ9UPW8 1703 aa18.82■□□□□ 0.6
COL8A1-206ENST00000474648 FOXD1Q16676 465 aa18.8■□□□□ 0.6
COL8A1-206ENST00000474648 BICRAQ9NZM4 1560 aa18.79■□□□□ 0.6
COL8A1-206ENST00000474648 PLPPR3Q6T4P5 718 aa18.56■□□□□ 0.56
COL8A1-206ENST00000474648 CECR2Q9BXF3 1484 aa18.39■□□□□ 0.53
COL8A1-206ENST00000474648 EIF4G1Q04637 1599 aaKnown RBP18.23■□□□□ 0.51
COL8A1-206ENST00000474648 MROH2BQ7Z745 1585 aa18.21■□□□□ 0.51
COL8A1-206ENST00000474648 BAZ1AQ9NRL2 1556 aaPredicted RBP18.21■□□□□ 0.51
COL8A1-206ENST00000474648 SMARCA4P51532 1647 aa18.16■□□□□ 0.5
COL8A1-206ENST00000474648 RSF1Q96T23 1441 aaPredicted RBP18.16■□□□□ 0.5
COL8A1-206ENST00000474648 DNAJC5BQ9UF47 199 aa18.14■□□□□ 0.49
COL8A1-206ENST00000474648 CC2D2AQ9P2K1 1620 aa18.05■□□□□ 0.48
COL8A1-206ENST00000474648 ATAD2BQ9ULI0 1458 aa18.04■□□□□ 0.48
COL8A1-206ENST00000474648 SUPT5HO00267 1087 aaKnown RBP18.02■□□□□ 0.48
COL8A1-206ENST00000474648 PEG3Q9GZU2 1588 aa18■□□□□ 0.47
COL8A1-206ENST00000474648 NCAPD3P42695 1498 aa17.99■□□□□ 0.47
COL8A1-206ENST00000474648 WIZO95785 1651 aa17.97■□□□□ 0.47
COL8A1-206ENST00000474648 SMARCA2P51531 1590 aa17.96■□□□□ 0.47
COL8A1-206ENST00000474648 PPP6R1Q9UPN7 881 aa17.96■□□□□ 0.47
COL8A1-206ENST00000474648 ADRA2BP18089 450 aa17.92■□□□□ 0.46
COL8A1-206ENST00000474648 BAZ1BQ9UIG0 1483 aaKnown RBP17.87■□□□□ 0.45
COL8A1-206ENST00000474648 HMGXB3Q12766 1538 aa17.85■□□□□ 0.45
COL8A1-206ENST00000474648 TOP2AP11388 1531 aaKnown RBP17.8■□□□□ 0.44
COL8A1-206ENST00000474648 PIAS4Q8N2W9 510 aaPredicted RBP17.66■□□□□ 0.42
COL8A1-206ENST00000474648 CCDC88BA6NC98 1476 aa17.66■□□□□ 0.42
COL8A1-206ENST00000474648 CADPSQ9ULU8 1353 aa17.5■□□□□ 0.39
COL8A1-206ENST00000474648 CFTRP13569 1480 aa17.45■□□□□ 0.38
COL8A1-206ENST00000474648 NESP48681 1621 aa17.43■□□□□ 0.38
COL8A1-206ENST00000474648 LAMC3Q9Y6N6 1575 aa17.36■□□□□ 0.37
COL8A1-206ENST00000474648 MSH5O43196 834 aa17.35■□□□□ 0.37
COL8A1-206ENST00000474648 PDS5BQ9NTI5 1447 aa17.29■□□□□ 0.36
COL8A1-206ENST00000474648 FANCD2Q9BXW9 1451 aa17.24■□□□□ 0.35
COL8A1-206ENST00000474648 ERCC6Q03468 1493 aa17.15■□□□□ 0.34
COL8A1-206ENST00000474648 CEP164Q9UPV0 1460 aa17.15■□□□□ 0.34
COL8A1-206ENST00000474648 PRDM2Q13029 1718 aa17.14■□□□□ 0.33
COL8A1-206ENST00000474648 KIF21AQ7Z4S6 1674 aa17.11■□□□□ 0.33
COL8A1-206ENST00000474648 ABCC8Q09428 1581 aa17.08■□□□□ 0.32
COL8A1-206ENST00000474648 MRC2Q9UBG0 1479 aa17.07■□□□□ 0.32
COL8A1-206ENST00000474648 WRNQ14191 1432 aaPredicted RBP eCLIP17.07■□□□□ 0.32
COL8A1-206ENST00000474648 URB2Q14146 1524 aaKnown RBP17.06■□□□□ 0.32
COL8A1-206ENST00000474648 CUX1P39880 1505 aa17.04■□□□□ 0.32
COL8A1-206ENST00000474648 TOPBP1Q92547 1522 aa17.01■□□□□ 0.31
COL8A1-206ENST00000474648 THOC2Q8NI27 1593 aaKnown RBP16.99■□□□□ 0.31
COL8A1-206ENST00000474648 DNMBPQ6XZF7 1577 aa16.98■□□□□ 0.31
COL8A1-206ENST00000474648 WDR62O43379 1518 aa16.98■□□□□ 0.31
COL8A1-206ENST00000474648 TRIM41Q8WV44 630 aa16.98■□□□□ 0.31
COL8A1-206ENST00000474648 SYNJ1O43426 1573 aa16.98■□□□□ 0.31
COL8A1-206ENST00000474648 TOP2BQ02880 1626 aa16.95■□□□□ 0.3
COL8A1-206ENST00000474648 BIVM-ERCC5R4GMW8 1640 aa16.91■□□□□ 0.3
COL8A1-206ENST00000474648 FGD5Q6ZNL6 1462 aa16.91■□□□□ 0.3
COL8A1-206ENST00000474648 POLA1P09884 1462 aaPredicted RBP16.9■□□□□ 0.3
COL8A1-206ENST00000474648 CUX2O14529 1486 aa16.89■□□□□ 0.29
COL8A1-206ENST00000474648 SOGA1O94964 1423 aa16.87■□□□□ 0.29
COL8A1-206ENST00000474648 RAD54L2Q9Y4B4 1467 aa16.86■□□□□ 0.29
COL8A1-206ENST00000474648 IFT140Q96RY7 1462 aa16.81■□□□□ 0.28
COL8A1-206ENST00000474648 TARBP1Q13395 1621 aaKnown RBP16.78■□□□□ 0.28
COL8A1-206ENST00000474648 ABCA10Q8WWZ4 1543 aa16.77■□□□□ 0.28
COL8A1-206ENST00000474648 TDRD9Q8NDG6 1382 aaKnown RBP16.76■□□□□ 0.27
COL8A1-206ENST00000474648 ZNF608Q9ULD9 1512 aaPredicted RBP16.74■□□□□ 0.27
COL8A1-206ENST00000474648 RUSC2Q8N2Y8 1516 aa16.71■□□□□ 0.27
COL8A1-206ENST00000474648 AQRO60306 1485 aaKnown RBP eCLIP16.71■□□□□ 0.27
COL8A1-206ENST00000474648 KIF27Q86VH2 1401 aa16.69■□□□□ 0.26
COL8A1-206ENST00000474648 WDR97A6NE52 1622 aa16.66■□□□□ 0.26
COL8A1-206ENST00000474648 IGF1RP08069 1367 aa16.65■□□□□ 0.26
COL8A1-206ENST00000474648 GAPVD1Q14C86 1478 aa16.65■□□□□ 0.26
COL8A1-206ENST00000474648 FAM9AQ8IZU1 332 aaPredicted RBP16.64■□□□□ 0.25
COL8A1-206ENST00000474648 CSRNP3Q8WYN3 585 aa16.62■□□□□ 0.25
COL8A1-206ENST00000474648 ABCA5Q8WWZ7 1642 aa16.61■□□□□ 0.25
COL8A1-206ENST00000474648 EEA1Q15075 1411 aa16.6■□□□□ 0.25
COL8A1-206ENST00000474648 GRIN2BQ13224 1484 aa16.59■□□□□ 0.25
COL8A1-206ENST00000474648 EIF4G3O43432 1585 aaKnown RBP16.59■□□□□ 0.25
COL8A1-206ENST00000474648 ERICH3Q5RHP9 1530 aa16.55■□□□□ 0.24
COL8A1-206ENST00000474648 CARMIL1Q5VZK9 1371 aa16.51■□□□□ 0.23
COL8A1-206ENST00000474648 SNAPC4Q5SXM2 1469 aa16.51■□□□□ 0.23
COL8A1-206ENST00000474648 PRXQ9BXM0 1461 aa16.49■□□□□ 0.23
COL8A1-206ENST00000474648 MAGI1Q96QZ7 1491 aaPredicted RBP16.48■□□□□ 0.23
COL8A1-206ENST00000474648 FHAD1B1AJZ9 1412 aa16.48■□□□□ 0.23
COL8A1-206ENST00000474648 PBRM1Q86U86 1689 aa16.46■□□□□ 0.23
COL8A1-206ENST00000474648 CHMP7Q8WUX9 453 aaPredicted RBP16.45■□□□□ 0.22
COL8A1-206ENST00000474648 FBLN2P98095 1184 aa16.43■□□□□ 0.22
COL8A1-206ENST00000474648 ADAMTS12P58397 1594 aa16.43■□□□□ 0.22
COL8A1-206ENST00000474648 SYNJ2O15056 1496 aa16.42■□□□□ 0.22
COL8A1-206ENST00000474648 RAPGEF2Q9Y4G8 1499 aa16.42■□□□□ 0.22
COL8A1-206ENST00000474648 CUL7Q14999 1698 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms