RNA–Protein interactions for RNA: ENST00000472479.1

UBE2F-220, Transcript of ubiquitin conjugating enzyme E2 F (putative), humanhuman

TSL 2

Gene UBE2F, Length 1,458 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2F-220ENST00000472479 NISCHQ9Y2I1 1504 aa24.43■■□□□ 1.5
UBE2F-220ENST00000472479 AEBP2Q6ZN18 517 aaPredicted RBP22.26■■□□□ 1.15
UBE2F-220ENST00000472479 CCDC180Q9P1Z9 1646 aa21.46■■□□□ 1.03
UBE2F-220ENST00000472479 CHIC1Q5VXU3 224 aa21.38■■□□□ 1.01
UBE2F-220ENST00000472479 ABCC9O60706 1549 aa20.84■□□□□ 0.93
UBE2F-220ENST00000472479 DCAF8L2P0C7V8 631 aa20.63■□□□□ 0.89
UBE2F-220ENST00000472479 ZCCHC6Q5VYS8 1495 aaKnown RBP20.38■□□□□ 0.85
UBE2F-220ENST00000472479 NACADO15069 1562 aa20.17■□□□□ 0.82
UBE2F-220ENST00000472479 DCAF1Q9Y4B6 1507 aa20.14■□□□□ 0.81
UBE2F-220ENST00000472479 RB1CC1Q8TDY2 1594 aa20.13■□□□□ 0.81
UBE2F-220ENST00000472479 MYO15BQ96JP2 1530 aa20.08■□□□□ 0.8
UBE2F-220ENST00000472479 SHROOM4Q9ULL8 1493 aa19.76■□□□□ 0.75
UBE2F-220ENST00000472479 SCRIBQ14160 1630 aa19.74■□□□□ 0.75
UBE2F-220ENST00000472479 PABPN1Q86U42 306 aaKnown RBP eCLIP19.63■□□□□ 0.73
UBE2F-220ENST00000472479 UNC13AQ9UPW8 1703 aa19.53■□□□□ 0.72
UBE2F-220ENST00000472479 BICRAQ9NZM4 1560 aa19.4■□□□□ 0.7
UBE2F-220ENST00000472479 CECR2Q9BXF3 1484 aa19.02■□□□□ 0.63
UBE2F-220ENST00000472479 SENP3Q9H4L4 574 aaPredicted RBP18.97■□□□□ 0.63
UBE2F-220ENST00000472479 EIF4G1Q04637 1599 aaKnown RBP18.92■□□□□ 0.62
UBE2F-220ENST00000472479 BAZ1AQ9NRL2 1556 aaPredicted RBP18.92■□□□□ 0.62
UBE2F-220ENST00000472479 SUPT5HO00267 1087 aaKnown RBP18.86■□□□□ 0.61
UBE2F-220ENST00000472479 SMARCA4P51532 1647 aa18.85■□□□□ 0.61
UBE2F-220ENST00000472479 MROH2BQ7Z745 1585 aa18.84■□□□□ 0.61
UBE2F-220ENST00000472479 RSF1Q96T23 1441 aaPredicted RBP18.79■□□□□ 0.6
UBE2F-220ENST00000472479 CC2D2AQ9P2K1 1620 aa18.77■□□□□ 0.6
UBE2F-220ENST00000472479 DNAJC5BQ9UF47 199 aa18.76■□□□□ 0.59
UBE2F-220ENST00000472479 PHF23Q9BUL5 403 aaPredicted RBP18.73■□□□□ 0.59
UBE2F-220ENST00000472479 SMARCA2P51531 1590 aa18.7■□□□□ 0.58
UBE2F-220ENST00000472479 ATAD2BQ9ULI0 1458 aa18.69■□□□□ 0.58
UBE2F-220ENST00000472479 WIZO95785 1651 aa18.66■□□□□ 0.58
UBE2F-220ENST00000472479 BAZ1BQ9UIG0 1483 aaKnown RBP18.61■□□□□ 0.57
UBE2F-220ENST00000472479 NCAPD3P42695 1498 aa18.61■□□□□ 0.57
UBE2F-220ENST00000472479 PEG3Q9GZU2 1588 aa18.58■□□□□ 0.56
UBE2F-220ENST00000472479 HMGXB3Q12766 1538 aa18.5■□□□□ 0.55
UBE2F-220ENST00000472479 TOP2AP11388 1531 aaKnown RBP18.47■□□□□ 0.55
UBE2F-220ENST00000472479 CCDC88BA6NC98 1476 aa18.31■□□□□ 0.52
UBE2F-220ENST00000472479 CADPSQ9ULU8 1353 aa18.15■□□□□ 0.5
UBE2F-220ENST00000472479 NESP48681 1621 aa18.09■□□□□ 0.49
UBE2F-220ENST00000472479 CFTRP13569 1480 aa18.06■□□□□ 0.48
UBE2F-220ENST00000472479 LAMC3Q9Y6N6 1575 aa18.05■□□□□ 0.48
UBE2F-220ENST00000472479 PDS5BQ9NTI5 1447 aa18.03■□□□□ 0.48
UBE2F-220ENST00000472479 ERCC6Q03468 1493 aa17.99■□□□□ 0.47
UBE2F-220ENST00000472479 FANCD2Q9BXW9 1451 aa17.94■□□□□ 0.46
UBE2F-220ENST00000472479 CEP164Q9UPV0 1460 aa17.89■□□□□ 0.45
UBE2F-220ENST00000472479 PRDM2Q13029 1718 aa17.84■□□□□ 0.45
UBE2F-220ENST00000472479 KIF21AQ7Z4S6 1674 aa17.81■□□□□ 0.44
UBE2F-220ENST00000472479 TRIM41Q8WV44 630 aa17.77■□□□□ 0.44
UBE2F-220ENST00000472479 WRNQ14191 1432 aaPredicted RBP eCLIP17.76■□□□□ 0.43
UBE2F-220ENST00000472479 MRC2Q9UBG0 1479 aa17.75■□□□□ 0.43
UBE2F-220ENST00000472479 ABCC8Q09428 1581 aa17.75■□□□□ 0.43
UBE2F-220ENST00000472479 URB2Q14146 1524 aaKnown RBP17.68■□□□□ 0.42
UBE2F-220ENST00000472479 TOPBP1Q92547 1522 aa17.66■□□□□ 0.42
UBE2F-220ENST00000472479 DNMBPQ6XZF7 1577 aa17.65■□□□□ 0.42
UBE2F-220ENST00000472479 CUX1P39880 1505 aa17.65■□□□□ 0.42
UBE2F-220ENST00000472479 FOXD1Q16676 465 aa17.63■□□□□ 0.41
UBE2F-220ENST00000472479 THOC2Q8NI27 1593 aaKnown RBP17.62■□□□□ 0.41
UBE2F-220ENST00000472479 WDR62O43379 1518 aa17.61■□□□□ 0.41
UBE2F-220ENST00000472479 SYNJ1O43426 1573 aa17.6■□□□□ 0.41
UBE2F-220ENST00000472479 TOP2BQ02880 1626 aa17.58■□□□□ 0.4
UBE2F-220ENST00000472479 FGD5Q6ZNL6 1462 aa17.57■□□□□ 0.4
UBE2F-220ENST00000472479 SOGA1O94964 1423 aa17.57■□□□□ 0.4
UBE2F-220ENST00000472479 BIVM-ERCC5R4GMW8 1640 aa17.54■□□□□ 0.4
UBE2F-220ENST00000472479 POLA1P09884 1462 aaPredicted RBP17.54■□□□□ 0.4
UBE2F-220ENST00000472479 CUX2O14529 1486 aa17.52■□□□□ 0.4
UBE2F-220ENST00000472479 RAD54L2Q9Y4B4 1467 aa17.51■□□□□ 0.39
UBE2F-220ENST00000472479 IFT140Q96RY7 1462 aa17.48■□□□□ 0.39
UBE2F-220ENST00000472479 FAM9AQ8IZU1 332 aaPredicted RBP17.45■□□□□ 0.38
UBE2F-220ENST00000472479 TDRD9Q8NDG6 1382 aaKnown RBP17.43■□□□□ 0.38
UBE2F-220ENST00000472479 KIF27Q86VH2 1401 aa17.39■□□□□ 0.37
UBE2F-220ENST00000472479 ABCA10Q8WWZ4 1543 aa17.38■□□□□ 0.37
UBE2F-220ENST00000472479 AQRO60306 1485 aaKnown RBP eCLIP17.36■□□□□ 0.375e-6■■■□□ 16.9
UBE2F-220ENST00000472479 TARBP1Q13395 1621 aaKnown RBP17.36■□□□□ 0.37
UBE2F-220ENST00000472479 ZNF608Q9ULD9 1512 aaPredicted RBP17.36■□□□□ 0.37
UBE2F-220ENST00000472479 GAPVD1Q14C86 1478 aa17.33■□□□□ 0.36
UBE2F-220ENST00000472479 CSRNP3Q8WYN3 585 aa17.3■□□□□ 0.36
UBE2F-220ENST00000472479 RUSC2Q8N2Y8 1516 aa17.29■□□□□ 0.36
UBE2F-220ENST00000472479 FBLN2P98095 1184 aa17.28■□□□□ 0.36
UBE2F-220ENST00000472479 EEA1Q15075 1411 aa17.27■□□□□ 0.36
UBE2F-220ENST00000472479 GRIN2BQ13224 1484 aa17.27■□□□□ 0.35
UBE2F-220ENST00000472479 EHMT2Q96KQ7 1210 aa17.26■□□□□ 0.35
UBE2F-220ENST00000472479 EIF4G3O43432 1585 aaKnown RBP17.26■□□□□ 0.35
UBE2F-220ENST00000472479 WDR97A6NE52 1622 aa17.25■□□□□ 0.35
UBE2F-220ENST00000472479 IGF1RP08069 1367 aa17.23■□□□□ 0.35
UBE2F-220ENST00000472479 CHMP7Q8WUX9 453 aaPredicted RBP17.23■□□□□ 0.35
UBE2F-220ENST00000472479 ABCA5Q8WWZ7 1642 aa17.22■□□□□ 0.35
UBE2F-220ENST00000472479 SNAPC4Q5SXM2 1469 aa17.19■□□□□ 0.34
UBE2F-220ENST00000472479 CARMIL1Q5VZK9 1371 aa17.19■□□□□ 0.34
UBE2F-220ENST00000472479 ERICH3Q5RHP9 1530 aa17.18■□□□□ 0.34
UBE2F-220ENST00000472479 PLPPR3Q6T4P5 718 aa17.17■□□□□ 0.34
UBE2F-220ENST00000472479 PBRM1Q86U86 1689 aa17.17■□□□□ 0.34
UBE2F-220ENST00000472479 MAGI1Q96QZ7 1491 aaPredicted RBP17.14■□□□□ 0.33
UBE2F-220ENST00000472479 FHAD1B1AJZ9 1412 aa17.14■□□□□ 0.33
UBE2F-220ENST00000472479 UBTFP17480 764 aaKnown RBP17.12■□□□□ 0.33
UBE2F-220ENST00000472479 RAPGEF2Q9Y4G8 1499 aa17.09■□□□□ 0.33
UBE2F-220ENST00000472479 CUL7Q14999 1698 aa17.09■□□□□ 0.33
UBE2F-220ENST00000472479 SYNJ2O15056 1496 aa17.08■□□□□ 0.32
UBE2F-220ENST00000472479 LOC105371045A0A1W2PR82 267 aa17.06■□□□□ 0.32
UBE2F-220ENST00000472479 ADAMTS12P58397 1594 aa17.05■□□□□ 0.32
UBE2F-220ENST00000472479 PRXQ9BXM0 1461 aa17.04■□□□□ 0.32
UBE2F-220ENST00000472479 OSCARQ8IYS5 282 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms