RNA–Protein interactions for RNA: ENST00000471968.1

HDAC3-206, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-206ENST00000471968 NISCHQ9Y2I1 1504 aa17.77■□□□□ 0.43
HDAC3-206ENST00000471968 ABCC9O60706 1549 aa17.62■□□□□ 0.41
HDAC3-206ENST00000471968 DNAJC5BQ9UF47 199 aa17.56■□□□□ 0.4
HDAC3-206ENST00000471968 DNAJC5Q9H3Z4 198 aa16.93■□□□□ 0.3
HDAC3-206ENST00000471968 CCDC180Q9P1Z9 1646 aa16.37■□□□□ 0.21
HDAC3-206ENST00000471968 PABPN1Q86U42 306 aaKnown RBP eCLIP16.27■□□□□ 0.2
HDAC3-206ENST00000471968 RB1CC1Q8TDY2 1594 aa16.19■□□□□ 0.18
HDAC3-206ENST00000471968 CECR2Q9BXF3 1484 aa15.97■□□□□ 0.15
HDAC3-206ENST00000471968 CC2D2AQ9P2K1 1620 aa15.8■□□□□ 0.12
HDAC3-206ENST00000471968 TRIM41Q8WV44 630 aa15.79■□□□□ 0.12
HDAC3-206ENST00000471968 NACADO15069 1562 aa15.79■□□□□ 0.12
HDAC3-206ENST00000471968 UNC13AQ9UPW8 1703 aa15.77■□□□□ 0.11
HDAC3-206ENST00000471968 BICRAQ9NZM4 1560 aa15.76■□□□□ 0.11
HDAC3-206ENST00000471968 DCAF8L2P0C7V8 631 aa15.63■□□□□ 0.09
HDAC3-206ENST00000471968 CUX2O14529 1486 aa15.59■□□□□ 0.09
HDAC3-206ENST00000471968 EIF4G1Q04637 1599 aaKnown RBP15.49■□□□□ 0.07
HDAC3-206ENST00000471968 SHROOM4Q9ULL8 1493 aa15.39■□□□□ 0.05
HDAC3-206ENST00000471968 ERCC6Q03468 1493 aa15.3■□□□□ 0.04
HDAC3-206ENST00000471968 AEBP2Q6ZN18 517 aaPredicted RBP15.15■□□□□ 0.02
HDAC3-206ENST00000471968 MYO15BQ96JP2 1530 aa15.15■□□□□ 0.02
HDAC3-206ENST00000471968 SCRIBQ14160 1630 aa14.99□□□□□ -0.01
HDAC3-206ENST00000471968 THOC2Q8NI27 1593 aaKnown RBP14.82□□□□□ -0.04
HDAC3-206ENST00000471968 NESP48681 1621 aa14.81□□□□□ -0.04
HDAC3-206ENST00000471968 TRHP20396 242 aaPredicted RBP14.74□□□□□ -0.05
HDAC3-206ENST00000471968 ILDR1Q86SU0 546 aaPredicted RBP14.74□□□□□ -0.05
HDAC3-206ENST00000471968 OSCARQ8IYS5 282 aa14.74□□□□□ -0.05
HDAC3-206ENST00000471968 SMARCA2P51531 1590 aa14.68□□□□□ -0.06
HDAC3-206ENST00000471968 BAZ1AQ9NRL2 1556 aaPredicted RBP14.68□□□□□ -0.06
HDAC3-206ENST00000471968 RIMBP3CA6NJZ7 1639 aa14.64□□□□□ -0.07
HDAC3-206ENST00000471968 RIMBP3BA6NNM3 1639 aa14.64□□□□□ -0.07
HDAC3-206ENST00000471968 RIMBP3Q9UFD9 1639 aa14.64□□□□□ -0.07
HDAC3-206ENST00000471968 NCAPD3P42695 1498 aa14.61□□□□□ -0.07
HDAC3-206ENST00000471968 DCAF1Q9Y4B6 1507 aa14.55□□□□□ -0.08
HDAC3-206ENST00000471968 CYB5RLQ6IPT4 315 aa14.51□□□□□ -0.09
HDAC3-206ENST00000471968 KIF21AQ7Z4S6 1674 aa14.51□□□□□ -0.09
HDAC3-206ENST00000471968 ARHGEF11O15085 1522 aa14.49□□□□□ -0.09
HDAC3-206ENST00000471968 ZCCHC6Q5VYS8 1495 aaKnown RBP14.48□□□□□ -0.09
HDAC3-206ENST00000471968 PDS5BQ9NTI5 1447 aa14.45□□□□□ -0.1
HDAC3-206ENST00000471968 LAMC3Q9Y6N6 1575 aa14.44□□□□□ -0.1
HDAC3-206ENST00000471968 ATAD2BQ9ULI0 1458 aa14.43□□□□□ -0.1
HDAC3-206ENST00000471968 MRC2Q9UBG0 1479 aa14.38□□□□□ -0.11
HDAC3-206ENST00000471968 HMGXB3Q12766 1538 aa14.37□□□□□ -0.11
HDAC3-206ENST00000471968 WDR62O43379 1518 aa14.36□□□□□ -0.11
HDAC3-206ENST00000471968 ARAP1Q96P48 1450 aa14.28□□□□□ -0.12
HDAC3-206ENST00000471968 BAZ1BQ9UIG0 1483 aaKnown RBP14.24□□□□□ -0.13
HDAC3-206ENST00000471968 CADPSQ9ULU8 1353 aa14.14□□□□□ -0.15
HDAC3-206ENST00000471968 SMARCA4P51532 1647 aa14.1□□□□□ -0.15
HDAC3-206ENST00000471968 CEP164Q9UPV0 1460 aa14.1□□□□□ -0.15
HDAC3-206ENST00000471968 RSF1Q96T23 1441 aaPredicted RBP14.01□□□□□ -0.17
HDAC3-206ENST00000471968 FANCD2Q9BXW9 1451 aa13.99□□□□□ -0.17
HDAC3-206ENST00000471968 ZNF608Q9ULD9 1512 aaPredicted RBP13.98□□□□□ -0.17
HDAC3-206ENST00000471968 KDM4FA0A1W2PPD8 638 aa13.97□□□□□ -0.17
HDAC3-206ENST00000471968 URB2Q14146 1524 aaKnown RBP13.94□□□□□ -0.18
HDAC3-206ENST00000471968 PEG3Q9GZU2 1588 aa13.93□□□□□ -0.18
HDAC3-206ENST00000471968 FBLN2P98095 1184 aa13.91□□□□□ -0.18
HDAC3-206ENST00000471968 LMTK3Q96Q04 1460 aa13.91□□□□□ -0.18
HDAC3-206ENST00000471968 FBXO41Q8TF61 875 aa13.9□□□□□ -0.18
HDAC3-206ENST00000471968 CHD1O14646 1710 aa13.89□□□□□ -0.19
HDAC3-206ENST00000471968 IFT140Q96RY7 1462 aa13.86□□□□□ -0.19
HDAC3-206ENST00000471968 SOCS7O14512 581 aa13.83□□□□□ -0.2
HDAC3-206ENST00000471968 ERCC6L2Q5T890 1561 aa13.82□□□□□ -0.2
HDAC3-206ENST00000471968 EIF4G3O43432 1585 aaKnown RBP13.8□□□□□ -0.2
HDAC3-206ENST00000471968 ILDR2Q71H61 639 aa13.75□□□□□ -0.21
HDAC3-206ENST00000471968 HECW2Q9P2P5 1572 aa13.75□□□□□ -0.21
HDAC3-206ENST00000471968 CLASP1Q7Z460 1538 aa13.72□□□□□ -0.21
HDAC3-206ENST00000471968 AQRO60306 1485 aaKnown RBP eCLIP13.72□□□□□ -0.213e-6■■■■□ 19.6
HDAC3-206ENST00000471968 CFTRP13569 1480 aa13.72□□□□□ -0.21
HDAC3-206ENST00000471968 GAPVD1Q14C86 1478 aa13.72□□□□□ -0.21
HDAC3-206ENST00000471968 MROH2BQ7Z745 1585 aa13.71□□□□□ -0.22
HDAC3-206ENST00000471968 KIF13AQ9H1H9 1805 aa13.62□□□□□ -0.23
HDAC3-206ENST00000471968 DISP3Q9P2K9 1392 aa13.61□□□□□ -0.23
HDAC3-206ENST00000471968 SYNJ1O43426 1573 aa13.61□□□□□ -0.23
HDAC3-206ENST00000471968 SYNJ2O15056 1496 aa13.61□□□□□ -0.23
HDAC3-206ENST00000471968 CHMP7Q8WUX9 453 aaPredicted RBP13.58□□□□□ -0.24
HDAC3-206ENST00000471968 ADGRL1O94910 1474 aa13.58□□□□□ -0.24
HDAC3-206ENST00000471968 TOPBP1Q92547 1522 aa13.58□□□□□ -0.24
HDAC3-206ENST00000471968 KDM6BO15054 1643 aa13.57□□□□□ -0.24
HDAC3-206ENST00000471968 FAM69CQ0P6D2 419 aa13.55□□□□□ -0.24
HDAC3-206ENST00000471968 SNAPC4Q5SXM2 1469 aa13.53□□□□□ -0.24
HDAC3-206ENST00000471968 TARBP1Q13395 1621 aaKnown RBP13.52□□□□□ -0.25
HDAC3-206ENST00000471968 WIZO95785 1651 aa13.47□□□□□ -0.25
HDAC3-206ENST00000471968 TDRD9Q8NDG6 1382 aaKnown RBP13.46□□□□□ -0.25
HDAC3-206ENST00000471968 ABCC10Q5T3U5 1492 aa13.45□□□□□ -0.26
HDAC3-206ENST00000471968 ABCC8Q09428 1581 aa13.43□□□□□ -0.26
HDAC3-206ENST00000471968 MAGI1Q96QZ7 1491 aaPredicted RBP13.41□□□□□ -0.26
HDAC3-206ENST00000471968 DNMBPQ6XZF7 1577 aa13.41□□□□□ -0.26
HDAC3-206ENST00000471968 PRDM2Q13029 1718 aa13.39□□□□□ -0.27
HDAC3-206ENST00000471968 POLA1P09884 1462 aaPredicted RBP13.38□□□□□ -0.27
HDAC3-206ENST00000471968 RAD54L2Q9Y4B4 1467 aa13.38□□□□□ -0.27
HDAC3-206ENST00000471968 DIP2BQ9P265 1576 aa13.37□□□□□ -0.27
HDAC3-206ENST00000471968 TSPOAP1O95153 1857 aa13.33□□□□□ -0.28
HDAC3-206ENST00000471968 SPATA31D1Q6ZQQ2 1576 aa13.32□□□□□ -0.28
HDAC3-206ENST00000471968 SOGA1O94964 1423 aa13.31□□□□□ -0.28
HDAC3-206ENST00000471968 GRIN2BQ13224 1484 aa13.3□□□□□ -0.28
HDAC3-206ENST00000471968 CEP170Q5SW79 1584 aa13.3□□□□□ -0.28
HDAC3-206ENST00000471968 NPM1P06748 294 aaKnown RBP eCLIP13.3□□□□□ -0.28
HDAC3-206ENST00000471968 MAPKBP1O60336 1514 aa13.28□□□□□ -0.28
HDAC3-206ENST00000471968 WDR97A6NE52 1622 aa13.25□□□□□ -0.29
HDAC3-206ENST00000471968 CERKQ8TCT0 537 aa13.21□□□□□ -0.29
HDAC3-206ENST00000471968 TOP2AP11388 1531 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms