RNA–Protein interactions for RNA: ENST00000470776.1

LMCD1-207, Transcript of LIM and cysteine rich domains 1, humanhuman

TSL 2

Gene LMCD1, Length 579 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-207ENST00000470776 NISCHQ9Y2I1 1504 aa20.59■□□□□ 0.89
LMCD1-207ENST00000470776 CCDC180Q9P1Z9 1646 aa18■□□□□ 0.47
LMCD1-207ENST00000470776 ZCCHC6Q5VYS8 1495 aaKnown RBP17.26■□□□□ 0.35
LMCD1-207ENST00000470776 ABCC9O60706 1549 aa17.23■□□□□ 0.35
LMCD1-207ENST00000470776 DCAF1Q9Y4B6 1507 aa17.11■□□□□ 0.33
LMCD1-207ENST00000470776 MYO15BQ96JP2 1530 aa16.98■□□□□ 0.31
LMCD1-207ENST00000470776 DCAF8L2P0C7V8 631 aa16.91■□□□□ 0.3
LMCD1-207ENST00000470776 NACADO15069 1562 aa16.85■□□□□ 0.29
LMCD1-207ENST00000470776 RB1CC1Q8TDY2 1594 aa16.69■□□□□ 0.26
LMCD1-207ENST00000470776 SHROOM4Q9ULL8 1493 aa16.53■□□□□ 0.24
LMCD1-207ENST00000470776 SCRIBQ14160 1630 aa16.43■□□□□ 0.22
LMCD1-207ENST00000470776 UNC13AQ9UPW8 1703 aa16.23■□□□□ 0.19
LMCD1-207ENST00000470776 BICRAQ9NZM4 1560 aa16.2■□□□□ 0.18
LMCD1-207ENST00000470776 PABPN1Q86U42 306 aaKnown RBP eCLIP16.13■□□□□ 0.17
LMCD1-207ENST00000470776 DNAJC5BQ9UF47 199 aa16.02■□□□□ 0.16
LMCD1-207ENST00000470776 CECR2Q9BXF3 1484 aa15.97■□□□□ 0.15
LMCD1-207ENST00000470776 RSF1Q96T23 1441 aaPredicted RBP15.92■□□□□ 0.14
LMCD1-207ENST00000470776 BAZ1AQ9NRL2 1556 aaPredicted RBP15.9■□□□□ 0.14
LMCD1-207ENST00000470776 MROH2BQ7Z745 1585 aa15.87■□□□□ 0.13
LMCD1-207ENST00000470776 SUPT5HO00267 1087 aaKnown RBP15.85■□□□□ 0.13
LMCD1-207ENST00000470776 SMARCA4P51532 1647 aa15.81■□□□□ 0.12
LMCD1-207ENST00000470776 EIF4G1Q04637 1599 aaKnown RBP15.7■□□□□ 0.1
LMCD1-207ENST00000470776 PEG3Q9GZU2 1588 aa15.7■□□□□ 0.1
LMCD1-207ENST00000470776 WIZO95785 1651 aa15.67■□□□□ 0.1
LMCD1-207ENST00000470776 ATAD2BQ9ULI0 1458 aa15.65■□□□□ 0.1
LMCD1-207ENST00000470776 SMARCA2P51531 1590 aa15.62■□□□□ 0.09
LMCD1-207ENST00000470776 NCAPD3P42695 1498 aa15.59■□□□□ 0.09
LMCD1-207ENST00000470776 TOP2AP11388 1531 aaKnown RBP15.57■□□□□ 0.08
LMCD1-207ENST00000470776 CC2D2AQ9P2K1 1620 aa15.56■□□□□ 0.08
LMCD1-207ENST00000470776 HMGXB3Q12766 1538 aa15.5■□□□□ 0.07
LMCD1-207ENST00000470776 BAZ1BQ9UIG0 1483 aaKnown RBP15.5■□□□□ 0.07
LMCD1-207ENST00000470776 CCDC88BA6NC98 1476 aa15.41■□□□□ 0.06
LMCD1-207ENST00000470776 CHIC1Q5VXU3 224 aa15.29■□□□□ 0.04
LMCD1-207ENST00000470776 AEBP2Q6ZN18 517 aaPredicted RBP15.29■□□□□ 0.04
LMCD1-207ENST00000470776 DNAJC5Q9H3Z4 198 aa15.27■□□□□ 0.04
LMCD1-207ENST00000470776 CFTRP13569 1480 aa15.16■□□□□ 0.02
LMCD1-207ENST00000470776 CADPSQ9ULU8 1353 aa15.14■□□□□ 0.01
LMCD1-207ENST00000470776 LAMC3Q9Y6N6 1575 aa15.02□□□□□ -0.01
LMCD1-207ENST00000470776 TRIM41Q8WV44 630 aa14.98□□□□□ -0.01
LMCD1-207ENST00000470776 NESP48681 1621 aa14.96□□□□□ -0.01
LMCD1-207ENST00000470776 WRNQ14191 1432 aaPredicted RBP eCLIP14.96□□□□□ -0.01
LMCD1-207ENST00000470776 PRDM2Q13029 1718 aa14.95□□□□□ -0.02
LMCD1-207ENST00000470776 ABCC8Q09428 1581 aa14.94□□□□□ -0.02
LMCD1-207ENST00000470776 FANCD2Q9BXW9 1451 aa14.93□□□□□ -0.02
LMCD1-207ENST00000470776 PDS5BQ9NTI5 1447 aa14.92□□□□□ -0.02
LMCD1-207ENST00000470776 SYNJ1O43426 1573 aa14.85□□□□□ -0.03
LMCD1-207ENST00000470776 TOP2BQ02880 1626 aa14.84□□□□□ -0.03
LMCD1-207ENST00000470776 CUX1P39880 1505 aa14.84□□□□□ -0.03
LMCD1-207ENST00000470776 CEP164Q9UPV0 1460 aa14.83□□□□□ -0.03
LMCD1-207ENST00000470776 BIVM-ERCC5R4GMW8 1640 aa14.82□□□□□ -0.04
LMCD1-207ENST00000470776 ERCC6Q03468 1493 aa14.79□□□□□ -0.04
LMCD1-207ENST00000470776 DNMBPQ6XZF7 1577 aa14.76□□□□□ -0.05
LMCD1-207ENST00000470776 TOPBP1Q92547 1522 aa14.76□□□□□ -0.05
LMCD1-207ENST00000470776 URB2Q14146 1524 aaKnown RBP14.75□□□□□ -0.05
LMCD1-207ENST00000470776 KIF21AQ7Z4S6 1674 aa14.73□□□□□ -0.05
LMCD1-207ENST00000470776 EEA1Q15075 1411 aa14.72□□□□□ -0.05
LMCD1-207ENST00000470776 MRC2Q9UBG0 1479 aa14.71□□□□□ -0.05
LMCD1-207ENST00000470776 SOGA1O94964 1423 aa14.7□□□□□ -0.06
LMCD1-207ENST00000470776 FGD5Q6ZNL6 1462 aa14.69□□□□□ -0.06
LMCD1-207ENST00000470776 POLA1P09884 1462 aaPredicted RBP14.66□□□□□ -0.06
LMCD1-207ENST00000470776 CUX2O14529 1486 aa14.65□□□□□ -0.06
LMCD1-207ENST00000470776 WDR62O43379 1518 aa14.65□□□□□ -0.06
LMCD1-207ENST00000470776 THOC2Q8NI27 1593 aaKnown RBP14.64□□□□□ -0.07
LMCD1-207ENST00000470776 RUSC2Q8N2Y8 1516 aa14.64□□□□□ -0.07
LMCD1-207ENST00000470776 CSRNP3Q8WYN3 585 aa14.63□□□□□ -0.07
LMCD1-207ENST00000470776 ABCA10Q8WWZ4 1543 aa14.61□□□□□ -0.07
LMCD1-207ENST00000470776 FAM9AQ8IZU1 332 aaPredicted RBP14.61□□□□□ -0.07
LMCD1-207ENST00000470776 KIF27Q86VH2 1401 aa14.6□□□□□ -0.07
LMCD1-207ENST00000470776 RAD54L2Q9Y4B4 1467 aa14.59□□□□□ -0.07
LMCD1-207ENST00000470776 LOC105371045A0A1W2PR82 267 aa14.54□□□□□ -0.08
LMCD1-207ENST00000470776 TARBP1Q13395 1621 aaKnown RBP14.53□□□□□ -0.08
LMCD1-207ENST00000470776 IFT140Q96RY7 1462 aa14.53□□□□□ -0.08
LMCD1-207ENST00000470776 IGF1RP08069 1367 aa14.53□□□□□ -0.08
LMCD1-207ENST00000470776 WDR97A6NE52 1622 aa14.51□□□□□ -0.09
LMCD1-207ENST00000470776 PRXQ9BXM0 1461 aa14.5□□□□□ -0.09
LMCD1-207ENST00000470776 KIF21BO75037 1637 aa14.47□□□□□ -0.09
LMCD1-207ENST00000470776 TDRD9Q8NDG6 1382 aaKnown RBP14.47□□□□□ -0.09
LMCD1-207ENST00000470776 ABCA5Q8WWZ7 1642 aa14.46□□□□□ -0.09
LMCD1-207ENST00000470776 GAPVD1Q14C86 1478 aa14.45□□□□□ -0.1
LMCD1-207ENST00000470776 GOLGA3Q08378 1498 aa14.44□□□□□ -0.1
LMCD1-207ENST00000470776 ERICH3Q5RHP9 1530 aa14.43□□□□□ -0.1
LMCD1-207ENST00000470776 CARMIL1Q5VZK9 1371 aa14.43□□□□□ -0.1
LMCD1-207ENST00000470776 TNIKQ9UKE5 1360 aa14.42□□□□□ -0.1
LMCD1-207ENST00000470776 ZNF608Q9ULD9 1512 aaPredicted RBP14.41□□□□□ -0.1
LMCD1-207ENST00000470776 AQRO60306 1485 aaKnown RBP eCLIP14.4□□□□□ -0.1
LMCD1-207ENST00000470776 RAPGEF2Q9Y4G8 1499 aa14.39□□□□□ -0.11
LMCD1-207ENST00000470776 GRIN2BQ13224 1484 aa14.38□□□□□ -0.11
LMCD1-207ENST00000470776 CUL7Q14999 1698 aa14.36□□□□□ -0.11
LMCD1-207ENST00000470776 UBTFP17480 764 aaKnown RBP14.34□□□□□ -0.11
LMCD1-207ENST00000470776 FHAD1B1AJZ9 1412 aa14.32□□□□□ -0.12
LMCD1-207ENST00000470776 EIF4G3O43432 1585 aaKnown RBP14.32□□□□□ -0.12
LMCD1-207ENST00000470776 EHMT2Q96KQ7 1210 aa14.32□□□□□ -0.12
LMCD1-207ENST00000470776 PBRM1Q86U86 1689 aa14.29□□□□□ -0.12
LMCD1-207ENST00000470776 MAGI1Q96QZ7 1491 aaPredicted RBP14.28□□□□□ -0.12
LMCD1-207ENST00000470776 ADAMTS12P58397 1594 aa14.27□□□□□ -0.12
LMCD1-207ENST00000470776 SNAPC4Q5SXM2 1469 aa14.26□□□□□ -0.13
LMCD1-207ENST00000470776 CEP162Q5TB80 1403 aa14.26□□□□□ -0.13
LMCD1-207ENST00000470776 SYNJ2O15056 1496 aa14.22□□□□□ -0.13
LMCD1-207ENST00000470776 CLIP1P30622 1438 aa14.19□□□□□ -0.14
LMCD1-207ENST00000470776 GRIN2AQ12879 1464 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms