RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 NISCHQ9Y2I1 1504 aa30.02■■■□□ 2.4
SPTLC1-204ENST00000469778 CCDC180Q9P1Z9 1646 aa26.56■■□□□ 1.84
SPTLC1-204ENST00000469778 ABCC9O60706 1549 aa25.66■■□□□ 1.7
SPTLC1-204ENST00000469778 ZCCHC6Q5VYS8 1495 aaKnown RBP25.03■■□□□ 1.6
SPTLC1-204ENST00000469778 MYO15BQ96JP2 1530 aa24.99■■□□□ 1.59
SPTLC1-204ENST00000469778 NACADO15069 1562 aa24.97■■□□□ 1.59
SPTLC1-204ENST00000469778 DCAF8L2P0C7V8 631 aa24.97■■□□□ 1.59
SPTLC1-204ENST00000469778 DCAF1Q9Y4B6 1507 aa24.94■■□□□ 1.58
SPTLC1-204ENST00000469778 RB1CC1Q8TDY2 1594 aa24.9■■□□□ 1.58
SPTLC1-204ENST00000469778 UNC13AQ9UPW8 1703 aa24.15■■□□□ 1.46
SPTLC1-204ENST00000469778 SCRIBQ14160 1630 aa24.13■■□□□ 1.45
SPTLC1-204ENST00000469778 PABPN1Q86U42 306 aaKnown RBP eCLIP24.05■■□□□ 1.44
SPTLC1-204ENST00000469778 BICRAQ9NZM4 1560 aa24.03■■□□□ 1.44
SPTLC1-204ENST00000469778 SHROOM4Q9ULL8 1493 aa24.02■■□□□ 1.44
SPTLC1-204ENST00000469778 EIF4G1Q04637 1599 aaKnown RBP23.42■■□□□ 1.34
SPTLC1-204ENST00000469778 DNAJC5BQ9UF47 199 aa23.33■■□□□ 1.33
SPTLC1-204ENST00000469778 CECR2Q9BXF3 1484 aa23.28■■□□□ 1.32
SPTLC1-204ENST00000469778 BAZ1AQ9NRL2 1556 aaPredicted RBP23.27■■□□□ 1.32
SPTLC1-204ENST00000469778 CC2D2AQ9P2K1 1620 aa23.23■■□□□ 1.31
SPTLC1-204ENST00000469778 SMARCA4P51532 1647 aa23.18■■□□□ 1.3
SPTLC1-204ENST00000469778 SMARCA2P51531 1590 aa23.07■■□□□ 1.28
SPTLC1-204ENST00000469778 MROH2BQ7Z745 1585 aa23.07■■□□□ 1.28
SPTLC1-204ENST00000469778 NCAPD3P42695 1498 aa23.06■■□□□ 1.28
SPTLC1-204ENST00000469778 ATAD2BQ9ULI0 1458 aa23.05■■□□□ 1.28
SPTLC1-204ENST00000469778 PEG3Q9GZU2 1588 aa23.03■■□□□ 1.28
SPTLC1-204ENST00000469778 RSF1Q96T23 1441 aaPredicted RBP22.98■■□□□ 1.27
SPTLC1-204ENST00000469778 HMGXB3Q12766 1538 aa22.92■■□□□ 1.26
SPTLC1-204ENST00000469778 BAZ1BQ9UIG0 1483 aaKnown RBP22.86■■□□□ 1.25
SPTLC1-204ENST00000469778 WIZO95785 1651 aa22.79■■□□□ 1.24
SPTLC1-204ENST00000469778 TOP2AP11388 1531 aaKnown RBP22.65■■□□□ 1.22
SPTLC1-204ENST00000469778 SUPT5HO00267 1087 aaKnown RBP22.56■■□□□ 1.2
SPTLC1-204ENST00000469778 CADPSQ9ULU8 1353 aa22.4■■□□□ 1.18
SPTLC1-204ENST00000469778 CCDC88BA6NC98 1476 aa22.4■■□□□ 1.18
SPTLC1-204ENST00000469778 LAMC3Q9Y6N6 1575 aa22.37■■□□□ 1.17
SPTLC1-204ENST00000469778 CFTRP13569 1480 aa22.29■■□□□ 1.16
SPTLC1-204ENST00000469778 PDS5BQ9NTI5 1447 aa22.28■■□□□ 1.16
SPTLC1-204ENST00000469778 NESP48681 1621 aa22.24■■□□□ 1.15
SPTLC1-204ENST00000469778 ERCC6Q03468 1493 aa22.16■■□□□ 1.14
SPTLC1-204ENST00000469778 FANCD2Q9BXW9 1451 aa22.07■■□□□ 1.12
SPTLC1-204ENST00000469778 CEP164Q9UPV0 1460 aa22.03■■□□□ 1.12
SPTLC1-204ENST00000469778 PRDM2Q13029 1718 aa22.02■■□□□ 1.12
SPTLC1-204ENST00000469778 KIF21AQ7Z4S6 1674 aa21.95■■□□□ 1.1
SPTLC1-204ENST00000469778 MRC2Q9UBG0 1479 aa21.94■■□□□ 1.1
SPTLC1-204ENST00000469778 ABCC8Q09428 1581 aa21.91■■□□□ 1.1
SPTLC1-204ENST00000469778 CUX2O14529 1486 aa21.89■■□□□ 1.09
SPTLC1-204ENST00000469778 THOC2Q8NI27 1593 aaKnown RBP21.86■■□□□ 1.09
SPTLC1-204ENST00000469778 WDR62O43379 1518 aa21.84■■□□□ 1.09
SPTLC1-204ENST00000469778 URB2Q14146 1524 aaKnown RBP21.78■■□□□ 1.08
SPTLC1-204ENST00000469778 DNMBPQ6XZF7 1577 aa21.74■■□□□ 1.07
SPTLC1-204ENST00000469778 TOPBP1Q92547 1522 aa21.73■■□□□ 1.07
SPTLC1-204ENST00000469778 WRNQ14191 1432 aaPredicted RBP eCLIP21.67■■□□□ 1.06
SPTLC1-204ENST00000469778 CUX1P39880 1505 aa21.63■■□□□ 1.05
SPTLC1-204ENST00000469778 IFT140Q96RY7 1462 aa21.6■■□□□ 1.05
SPTLC1-204ENST00000469778 TOP2BQ02880 1626 aa21.56■■□□□ 1.04
SPTLC1-204ENST00000469778 POLA1P09884 1462 aaPredicted RBP21.56■■□□□ 1.04
SPTLC1-204ENST00000469778 SOGA1O94964 1423 aa21.55■■□□□ 1.04
SPTLC1-204ENST00000469778 FGD5Q6ZNL6 1462 aa21.53■■□□□ 1.04
SPTLC1-204ENST00000469778 BIVM-ERCC5R4GMW8 1640 aa21.51■■□□□ 1.03
SPTLC1-204ENST00000469778 SYNJ1O43426 1573 aa21.48■■□□□ 1.03
SPTLC1-204ENST00000469778 TARBP1Q13395 1621 aaKnown RBP21.44■■□□□ 1.02
SPTLC1-204ENST00000469778 WDR97A6NE52 1622 aa21.42■■□□□ 1.02
SPTLC1-204ENST00000469778 RAD54L2Q9Y4B4 1467 aa21.42■■□□□ 1.02
SPTLC1-204ENST00000469778 ABCA10Q8WWZ4 1543 aa21.4■■□□□ 1.02
SPTLC1-204ENST00000469778 TRIM41Q8WV44 630 aa21.4■■□□□ 1.02
SPTLC1-204ENST00000469778 ZNF608Q9ULD9 1512 aaPredicted RBP21.36■■□□□ 1.01
SPTLC1-204ENST00000469778 TDRD9Q8NDG6 1382 aaKnown RBP21.34■■□□□ 1.01
SPTLC1-204ENST00000469778 AQRO60306 1485 aaKnown RBP eCLIP21.32■■□□□ 18e-9■■■■■ 32.6
SPTLC1-204ENST00000469778 GAPVD1Q14C86 1478 aa21.28■■□□□ 1
SPTLC1-204ENST00000469778 EIF4G3O43432 1585 aaKnown RBP21.27■□□□□ 0.99
SPTLC1-204ENST00000469778 CHIC1Q5VXU3 224 aa21.26■□□□□ 0.99
SPTLC1-204ENST00000469778 GRIN2BQ13224 1484 aa21.26■□□□□ 0.99
SPTLC1-204ENST00000469778 KIF27Q86VH2 1401 aa21.25■□□□□ 0.99
SPTLC1-204ENST00000469778 ABCA5Q8WWZ7 1642 aa21.22■□□□□ 0.99
SPTLC1-204ENST00000469778 MAGI1Q96QZ7 1491 aaPredicted RBP21.19■□□□□ 0.98
SPTLC1-204ENST00000469778 ERICH3Q5RHP9 1530 aa21.16■□□□□ 0.98
SPTLC1-204ENST00000469778 IGF1RP08069 1367 aa21.11■□□□□ 0.97
SPTLC1-204ENST00000469778 SNAPC4Q5SXM2 1469 aa21.11■□□□□ 0.97
SPTLC1-204ENST00000469778 OSCARQ8IYS5 282 aa21.1■□□□□ 0.97
SPTLC1-204ENST00000469778 CHMP7Q8WUX9 453 aaPredicted RBP21.1■□□□□ 0.97
SPTLC1-204ENST00000469778 SYNJ2O15056 1496 aa21.08■□□□□ 0.97
SPTLC1-204ENST00000469778 FHAD1B1AJZ9 1412 aa21.08■□□□□ 0.97
SPTLC1-204ENST00000469778 EEA1Q15075 1411 aa21.08■□□□□ 0.97
SPTLC1-204ENST00000469778 PBRM1Q86U86 1689 aa21.08■□□□□ 0.96
SPTLC1-204ENST00000469778 FBLN2P98095 1184 aa21.05■□□□□ 0.96
SPTLC1-204ENST00000469778 CARMIL1Q5VZK9 1371 aa20.99■□□□□ 0.95
SPTLC1-204ENST00000469778 CUL7Q14999 1698 aa20.99■□□□□ 0.95
SPTLC1-204ENST00000469778 ADAMTS12P58397 1594 aa20.98■□□□□ 0.95
SPTLC1-204ENST00000469778 CSRNP3Q8WYN3 585 aa20.98■□□□□ 0.95
SPTLC1-204ENST00000469778 RUSC2Q8N2Y8 1516 aa20.97■□□□□ 0.95
SPTLC1-204ENST00000469778 GRIN2AQ12879 1464 aa20.94■□□□□ 0.94
SPTLC1-204ENST00000469778 DNAJC5Q9H3Z4 198 aa20.94■□□□□ 0.94
SPTLC1-204ENST00000469778 CHD1O14646 1710 aa20.9■□□□□ 0.94
SPTLC1-204ENST00000469778 RAPGEF2Q9Y4G8 1499 aa20.88■□□□□ 0.93
SPTLC1-204ENST00000469778 PRXQ9BXM0 1461 aa20.87■□□□□ 0.93
SPTLC1-204ENST00000469778 NUP160Q12769 1436 aa20.87■□□□□ 0.93
SPTLC1-204ENST00000469778 FAM9AQ8IZU1 332 aaPredicted RBP20.81■□□□□ 0.92
SPTLC1-204ENST00000469778 CLASP1Q7Z460 1538 aa20.78■□□□□ 0.92
SPTLC1-204ENST00000469778 KIAA0586Q9BVV6 1533 aa20.77■□□□□ 0.92
SPTLC1-204ENST00000469778 CEP170Q5SW79 1584 aa20.76■□□□□ 0.91
SPTLC1-204ENST00000469778 JPH4Q96JJ6 628 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 132.9 ms