RNA–Protein interactions for RNA: ENST00000469498.1

GAPVD1-213, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 3

Gene GAPVD1, Length 385 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-213ENST00000469498 AEBP2Q6ZN18 517 aaPredicted RBP24.17■■□□□ 1.46
GAPVD1-213ENST00000469498 CHIC1Q5VXU3 224 aa22.79■■□□□ 1.24
GAPVD1-213ENST00000469498 SENP3Q9H4L4 574 aaPredicted RBP20.93■□□□□ 0.94
GAPVD1-213ENST00000469498 PHF23Q9BUL5 403 aaPredicted RBP20.45■□□□□ 0.86
GAPVD1-213ENST00000469498 NISCHQ9Y2I1 1504 aa19.86■□□□□ 0.77
GAPVD1-213ENST00000469498 FOXD1Q16676 465 aa19.47■□□□□ 0.71
GAPVD1-213ENST00000469498 POTEDQ86YR6 584 aa19.37■□□□□ 0.69
GAPVD1-213ENST00000469498 MSH5O43196 834 aa18.67■□□□□ 0.58
GAPVD1-213ENST00000469498 PIAS4Q8N2W9 510 aaPredicted RBP18.1■□□□□ 0.49
GAPVD1-213ENST00000469498 CCDC180Q9P1Z9 1646 aa17.64■□□□□ 0.41
GAPVD1-213ENST00000469498 PLPPR3Q6T4P5 718 aa17.57■□□□□ 0.4
GAPVD1-213ENST00000469498 PPP6R1Q9UPN7 881 aa17.55■□□□□ 0.4
GAPVD1-213ENST00000469498 ADRA2BP18089 450 aa17.49■□□□□ 0.39
GAPVD1-213ENST00000469498 ABCC9O60706 1549 aa16.85■□□□□ 0.29
GAPVD1-213ENST00000469498 ZCCHC6Q5VYS8 1495 aaKnown RBP16.64■□□□□ 0.25
GAPVD1-213ENST00000469498 CACNB1Q02641 598 aaPredicted RBP16.45■□□□□ 0.22
GAPVD1-213ENST00000469498 DCAF1Q9Y4B6 1507 aa16.42■□□□□ 0.22
GAPVD1-213ENST00000469498 DMRT2Q9Y5R5 561 aa16.42■□□□□ 0.22
GAPVD1-213ENST00000469498 NACADO15069 1562 aa16.39■□□□□ 0.21
GAPVD1-213ENST00000469498 DCAF8L2P0C7V8 631 aa16.39■□□□□ 0.21
GAPVD1-213ENST00000469498 RB1CC1Q8TDY2 1594 aa16.37■□□□□ 0.21
GAPVD1-213ENST00000469498 MYO15BQ96JP2 1530 aa16.34■□□□□ 0.21
GAPVD1-213ENST00000469498 MAPK8IP2Q13387 824 aaPredicted RBP16.25■□□□□ 0.19
GAPVD1-213ENST00000469498 SCAF1Q9H7N4 1312 aaKnown RBP16.21■□□□□ 0.19
GAPVD1-213ENST00000469498 UNC13AQ9UPW8 1703 aa16.21■□□□□ 0.19
GAPVD1-213ENST00000469498 SCRIBQ14160 1630 aa16.12■□□□□ 0.17
GAPVD1-213ENST00000469498 SHROOM4Q9ULL8 1493 aa15.92■□□□□ 0.14
GAPVD1-213ENST00000469498 BICRAQ9NZM4 1560 aa15.87■□□□□ 0.13
GAPVD1-213ENST00000469498 DCAF8L1A6NGE4 600 aa15.84■□□□□ 0.13
GAPVD1-213ENST00000469498 RNF39Q9H2S5 420 aa15.76■□□□□ 0.11
GAPVD1-213ENST00000469498 PABPN1Q86U42 306 aaKnown RBP eCLIP15.72■□□□□ 0.11
GAPVD1-213ENST00000469498 C1QBPQ07021 282 aaKnown RBP15.56■□□□□ 0.08
GAPVD1-213ENST00000469498 HOXD11P31277 338 aaPredicted RBP15.51■□□□□ 0.07
GAPVD1-213ENST00000469498 CECR2Q9BXF3 1484 aa15.44■□□□□ 0.06
GAPVD1-213ENST00000469498 SMARCA4P51532 1647 aa15.43■□□□□ 0.06
GAPVD1-213ENST00000469498 EIF4G1Q04637 1599 aaKnown RBP15.42■□□□□ 0.06
GAPVD1-213ENST00000469498 BAZ1AQ9NRL2 1556 aaPredicted RBP15.4■□□□□ 0.06
GAPVD1-213ENST00000469498 MROH2BQ7Z745 1585 aa15.34■□□□□ 0.05
GAPVD1-213ENST00000469498 CC2D2AQ9P2K1 1620 aa15.31■□□□□ 0.04
GAPVD1-213ENST00000469498 WIZO95785 1651 aa15.28■□□□□ 0.04
GAPVD1-213ENST00000469498 PPP4R3CPQ6ZMV5 832 aa15.24■□□□□ 0.03
GAPVD1-213ENST00000469498 RNF216Q9NWF9 866 aaPredicted RBP15.23■□□□□ 0.03
GAPVD1-213ENST00000469498 RSF1Q96T23 1441 aaPredicted RBP15.22■□□□□ 0.03
GAPVD1-213ENST00000469498 DNAJC5BQ9UF47 199 aa15.21■□□□□ 0.03
GAPVD1-213ENST00000469498 PEG3Q9GZU2 1588 aa15.2■□□□□ 0.02
GAPVD1-213ENST00000469498 CNKSR2Q8WXI2 1034 aa15.19■□□□□ 0.02
GAPVD1-213ENST00000469498 SMARCA2P51531 1590 aa15.19■□□□□ 0.02
GAPVD1-213ENST00000469498 ATAD2BQ9ULI0 1458 aa15.14■□□□□ 0.01
GAPVD1-213ENST00000469498 HMGXB3Q12766 1538 aa15.1■□□□□ 0.01
GAPVD1-213ENST00000469498 BAZ1BQ9UIG0 1483 aaKnown RBP15.08■□□□□ 0.01
GAPVD1-213ENST00000469498 SUPT5HO00267 1087 aaKnown RBP15.08■□□□□ 0
GAPVD1-213ENST00000469498 KCNA4P22459 653 aa15.08■□□□□ 0
GAPVD1-213ENST00000469498 POTEHQ6S545 545 aa15.08■□□□□ 0
GAPVD1-213ENST00000469498 TOP2AP11388 1531 aaKnown RBP15.07■□□□□ 0
GAPVD1-213ENST00000469498 NCAPD3P42695 1498 aa15.05■□□□□ -0
GAPVD1-213ENST00000469498 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.85□□□□□ -0.03
GAPVD1-213ENST00000469498 PRDM2Q13029 1718 aa14.84□□□□□ -0.03
GAPVD1-213ENST00000469498 CCDC88BA6NC98 1476 aa14.83□□□□□ -0.03
GAPVD1-213ENST00000469498 NCBP3Q53F19 620 aaKnown RBP14.81□□□□□ -0.04
GAPVD1-213ENST00000469498 LAMC3Q9Y6N6 1575 aa14.7□□□□□ -0.06
GAPVD1-213ENST00000469498 NESP48681 1621 aa14.69□□□□□ -0.06
GAPVD1-213ENST00000469498 NPM3O75607 178 aaKnown RBP14.67□□□□□ -0.06
GAPVD1-213ENST00000469498 KIF21AQ7Z4S6 1674 aa14.67□□□□□ -0.06
GAPVD1-213ENST00000469498 CFTRP13569 1480 aa14.63□□□□□ -0.07
GAPVD1-213ENST00000469498 CADPSQ9ULU8 1353 aa14.61□□□□□ -0.07
GAPVD1-213ENST00000469498 FANCD2Q9BXW9 1451 aa14.52□□□□□ -0.08
GAPVD1-213ENST00000469498 ABCC8Q09428 1581 aa14.5□□□□□ -0.09
GAPVD1-213ENST00000469498 CEP164Q9UPV0 1460 aa14.5□□□□□ -0.09
GAPVD1-213ENST00000469498 PDS5BQ9NTI5 1447 aa14.49□□□□□ -0.09
GAPVD1-213ENST00000469498 DSG3P32926 999 aa14.49□□□□□ -0.09
GAPVD1-213ENST00000469498 ERCC6Q03468 1493 aa14.48□□□□□ -0.09
GAPVD1-213ENST00000469498 CAPN15O75808 1086 aa14.47□□□□□ -0.09
GAPVD1-213ENST00000469498 THOC2Q8NI27 1593 aaKnown RBP14.47□□□□□ -0.09
GAPVD1-213ENST00000469498 BIVM-ERCC5R4GMW8 1640 aa14.41□□□□□ -0.1
GAPVD1-213ENST00000469498 SYNJ1O43426 1573 aa14.41□□□□□ -0.1
GAPVD1-213ENST00000469498 MRC2Q9UBG0 1479 aa14.4□□□□□ -0.1
GAPVD1-213ENST00000469498 DNMBPQ6XZF7 1577 aa14.39□□□□□ -0.11
GAPVD1-213ENST00000469498 CUX1P39880 1505 aa14.39□□□□□ -0.11
GAPVD1-213ENST00000469498 URB2Q14146 1524 aaKnown RBP14.38□□□□□ -0.11
GAPVD1-213ENST00000469498 TOP2BQ02880 1626 aa14.37□□□□□ -0.11
GAPVD1-213ENST00000469498 WDR62O43379 1518 aa14.36□□□□□ -0.11
GAPVD1-213ENST00000469498 WRNQ14191 1432 aaPredicted RBP eCLIP14.36□□□□□ -0.11
GAPVD1-213ENST00000469498 SLC4A1APQ9BWU0 796 aaKnown RBP14.35□□□□□ -0.11
GAPVD1-213ENST00000469498 U3KPZ7 1027 aaPredicted RBP14.35□□□□□ -0.11
GAPVD1-213ENST00000469498 TOPBP1Q92547 1522 aa14.35□□□□□ -0.11
GAPVD1-213ENST00000469498 SPINK5Q9NQ38 1064 aaPredicted RBP14.34□□□□□ -0.11
GAPVD1-213ENST00000469498 WDR97A6NE52 1622 aa14.27□□□□□ -0.12
GAPVD1-213ENST00000469498 FGD5Q6ZNL6 1462 aa14.27□□□□□ -0.12
GAPVD1-213ENST00000469498 POLA1P09884 1462 aaPredicted RBP14.24□□□□□ -0.13
GAPVD1-213ENST00000469498 TARBP1Q13395 1621 aaKnown RBP14.22□□□□□ -0.13
GAPVD1-213ENST00000469498 TRIM41Q8WV44 630 aa14.19□□□□□ -0.14
GAPVD1-213ENST00000469498 CUX2O14529 1486 aa14.18□□□□□ -0.14
GAPVD1-213ENST00000469498 RAD54L2Q9Y4B4 1467 aa14.18□□□□□ -0.14
GAPVD1-213ENST00000469498 PBRM1Q86U86 1689 aa14.16□□□□□ -0.14
GAPVD1-213ENST00000469498 EIF4G3O43432 1585 aaKnown RBP14.13□□□□□ -0.15
GAPVD1-213ENST00000469498 IFT140Q96RY7 1462 aa14.13□□□□□ -0.15
GAPVD1-213ENST00000469498 ABCA5Q8WWZ7 1642 aa14.13□□□□□ -0.15
GAPVD1-213ENST00000469498 SOGA1O94964 1423 aa14.13□□□□□ -0.15
GAPVD1-213ENST00000469498 APLP2Q06481 763 aa14.12□□□□□ -0.15
GAPVD1-213ENST00000469498 EHMT2Q96KQ7 1210 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms