RNA–Protein interactions for RNA: ENST00000467065.1

UBXN4-205, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 334 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-205ENST00000467065 AEBP2Q6ZN18 517 aaPredicted RBP18.43■□□□□ 0.54
UBXN4-205ENST00000467065 CHIC1Q5VXU3 224 aa17.17■□□□□ 0.34
UBXN4-205ENST00000467065 NISCHQ9Y2I1 1504 aa16.2■□□□□ 0.18
UBXN4-205ENST00000467065 SENP3Q9H4L4 574 aaPredicted RBP15.73■□□□□ 0.11
UBXN4-205ENST00000467065 PHF23Q9BUL5 403 aaPredicted RBP15.48■□□□□ 0.07
UBXN4-205ENST00000467065 FOXD1Q16676 465 aa14.72□□□□□ -0.05
UBXN4-205ENST00000467065 CCDC180Q9P1Z9 1646 aa14.57□□□□□ -0.08
UBXN4-205ENST00000467065 ABCC9O60706 1549 aa14.37□□□□□ -0.11
UBXN4-205ENST00000467065 POTEDQ86YR6 584 aa14.09□□□□□ -0.15
UBXN4-205ENST00000467065 MSH5O43196 834 aa13.86□□□□□ -0.19
UBXN4-205ENST00000467065 RB1CC1Q8TDY2 1594 aa13.75□□□□□ -0.21
UBXN4-205ENST00000467065 NACADO15069 1562 aa13.66□□□□□ -0.22
UBXN4-205ENST00000467065 PIAS4Q8N2W9 510 aaPredicted RBP13.63□□□□□ -0.23
UBXN4-205ENST00000467065 UNC13AQ9UPW8 1703 aa13.59□□□□□ -0.23
UBXN4-205ENST00000467065 DCAF8L2P0C7V8 631 aa13.56□□□□□ -0.24
UBXN4-205ENST00000467065 PLPPR3Q6T4P5 718 aa13.55□□□□□ -0.24
UBXN4-205ENST00000467065 PPP6R1Q9UPN7 881 aa13.54□□□□□ -0.24
UBXN4-205ENST00000467065 MYO15BQ96JP2 1530 aa13.49□□□□□ -0.25
UBXN4-205ENST00000467065 ZCCHC6Q5VYS8 1495 aaKnown RBP13.48□□□□□ -0.25
UBXN4-205ENST00000467065 ADRA2BP18089 450 aa13.45□□□□□ -0.26
UBXN4-205ENST00000467065 DCAF1Q9Y4B6 1507 aa13.38□□□□□ -0.27
UBXN4-205ENST00000467065 BICRAQ9NZM4 1560 aa13.36□□□□□ -0.27
UBXN4-205ENST00000467065 PABPN1Q86U42 306 aaKnown RBP eCLIP13.34□□□□□ -0.27
UBXN4-205ENST00000467065 DNAJC5BQ9UF47 199 aa13.29□□□□□ -0.28
UBXN4-205ENST00000467065 SCRIBQ14160 1630 aa13.28□□□□□ -0.28
UBXN4-205ENST00000467065 SHROOM4Q9ULL8 1493 aa13.13□□□□□ -0.31
UBXN4-205ENST00000467065 CC2D2AQ9P2K1 1620 aa13.02□□□□□ -0.32
UBXN4-205ENST00000467065 EIF4G1Q04637 1599 aaKnown RBP13.01□□□□□ -0.33
UBXN4-205ENST00000467065 CECR2Q9BXF3 1484 aa12.91□□□□□ -0.34
UBXN4-205ENST00000467065 SMARCA4P51532 1647 aa12.67□□□□□ -0.38
UBXN4-205ENST00000467065 BAZ1AQ9NRL2 1556 aaPredicted RBP12.58□□□□□ -0.4
UBXN4-205ENST00000467065 ATAD2BQ9ULI0 1458 aa12.58□□□□□ -0.4
UBXN4-205ENST00000467065 SMARCA2P51531 1590 aa12.57□□□□□ -0.4
UBXN4-205ENST00000467065 NCAPD3P42695 1498 aa12.56□□□□□ -0.4
UBXN4-205ENST00000467065 HMGXB3Q12766 1538 aa12.55□□□□□ -0.4
UBXN4-205ENST00000467065 MROH2BQ7Z745 1585 aa12.51□□□□□ -0.41
UBXN4-205ENST00000467065 PEG3Q9GZU2 1588 aa12.51□□□□□ -0.41
UBXN4-205ENST00000467065 BAZ1BQ9UIG0 1483 aaKnown RBP12.48□□□□□ -0.41
UBXN4-205ENST00000467065 MAPK8IP2Q13387 824 aaPredicted RBP12.45□□□□□ -0.42
UBXN4-205ENST00000467065 DMRT2Q9Y5R5 561 aa12.44□□□□□ -0.42
UBXN4-205ENST00000467065 WIZO95785 1651 aa12.42□□□□□ -0.42
UBXN4-205ENST00000467065 NESP48681 1621 aa12.39□□□□□ -0.43
UBXN4-205ENST00000467065 ERCC6Q03468 1493 aa12.38□□□□□ -0.43
UBXN4-205ENST00000467065 KIF21AQ7Z4S6 1674 aa12.33□□□□□ -0.44
UBXN4-205ENST00000467065 LAMC3Q9Y6N6 1575 aa12.33□□□□□ -0.44
UBXN4-205ENST00000467065 CUX2O14529 1486 aa12.3□□□□□ -0.44
UBXN4-205ENST00000467065 THOC2Q8NI27 1593 aaKnown RBP12.29□□□□□ -0.44
UBXN4-205ENST00000467065 SCAF1Q9H7N4 1312 aaKnown RBP12.27□□□□□ -0.45
UBXN4-205ENST00000467065 RSF1Q96T23 1441 aaPredicted RBP12.25□□□□□ -0.45
UBXN4-205ENST00000467065 TOP2AP11388 1531 aaKnown RBP12.23□□□□□ -0.45
UBXN4-205ENST00000467065 PDS5BQ9NTI5 1447 aa12.19□□□□□ -0.46
UBXN4-205ENST00000467065 CADPSQ9ULU8 1353 aa12.18□□□□□ -0.46
UBXN4-205ENST00000467065 PRDM2Q13029 1718 aa12.18□□□□□ -0.46
UBXN4-205ENST00000467065 MRC2Q9UBG0 1479 aa12.11□□□□□ -0.47
UBXN4-205ENST00000467065 WDR62O43379 1518 aa12.11□□□□□ -0.47
UBXN4-205ENST00000467065 CEP164Q9UPV0 1460 aa12.1□□□□□ -0.47
UBXN4-205ENST00000467065 CFTRP13569 1480 aa12.09□□□□□ -0.47
UBXN4-205ENST00000467065 FANCD2Q9BXW9 1451 aa12.09□□□□□ -0.47
UBXN4-205ENST00000467065 CACNB1Q02641 598 aaPredicted RBP12.06□□□□□ -0.48
UBXN4-205ENST00000467065 DNAJC5Q9H3Z4 198 aa12.06□□□□□ -0.48
UBXN4-205ENST00000467065 CCDC88BA6NC98 1476 aa12.06□□□□□ -0.48
UBXN4-205ENST00000467065 URB2Q14146 1524 aaKnown RBP12□□□□□ -0.49
UBXN4-205ENST00000467065 TOPBP1Q92547 1522 aa11.9□□□□□ -0.5
UBXN4-205ENST00000467065 DNMBPQ6XZF7 1577 aa11.88□□□□□ -0.51
UBXN4-205ENST00000467065 HOXD11P31277 338 aaPredicted RBP11.88□□□□□ -0.51
UBXN4-205ENST00000467065 DCAF8L1A6NGE4 600 aa11.85□□□□□ -0.51
UBXN4-205ENST00000467065 PPP4R3CPQ6ZMV5 832 aa11.84□□□□□ -0.51
UBXN4-205ENST00000467065 EIF4G3O43432 1585 aaKnown RBP11.84□□□□□ -0.51
UBXN4-205ENST00000467065 ZNF608Q9ULD9 1512 aaPredicted RBP11.83□□□□□ -0.52
UBXN4-205ENST00000467065 RNF39Q9H2S5 420 aa11.83□□□□□ -0.52
UBXN4-205ENST00000467065 ABCC8Q09428 1581 aa11.83□□□□□ -0.52
UBXN4-205ENST00000467065 IFT140Q96RY7 1462 aa11.83□□□□□ -0.52
UBXN4-205ENST00000467065 TARBP1Q13395 1621 aaKnown RBP11.81□□□□□ -0.52
UBXN4-205ENST00000467065 SUPT5HO00267 1087 aaKnown RBP11.8□□□□□ -0.52
UBXN4-205ENST00000467065 POLA1P09884 1462 aaPredicted RBP11.77□□□□□ -0.52
UBXN4-205ENST00000467065 CHD1O14646 1710 aa11.77□□□□□ -0.53
UBXN4-205ENST00000467065 CUX1P39880 1505 aa11.76□□□□□ -0.53
UBXN4-205ENST00000467065 WDR97A6NE52 1622 aa11.73□□□□□ -0.53
UBXN4-205ENST00000467065 FGD5Q6ZNL6 1462 aa11.73□□□□□ -0.53
UBXN4-205ENST00000467065 RAD54L2Q9Y4B4 1467 aa11.73□□□□□ -0.53
UBXN4-205ENST00000467065 AQRO60306 1485 aaKnown RBP eCLIP11.71□□□□□ -0.53
UBXN4-205ENST00000467065 CNKSR2Q8WXI2 1034 aa11.69□□□□□ -0.54
UBXN4-205ENST00000467065 SOGA1O94964 1423 aa11.69□□□□□ -0.54
UBXN4-205ENST00000467065 PBRM1Q86U86 1689 aa11.68□□□□□ -0.54
UBXN4-205ENST00000467065 OSCARQ8IYS5 282 aa11.68□□□□□ -0.54
UBXN4-205ENST00000467065 RNF216Q9NWF9 866 aaPredicted RBP11.68□□□□□ -0.54
UBXN4-205ENST00000467065 RIMBP3CA6NJZ7 1639 aa11.67□□□□□ -0.54
UBXN4-205ENST00000467065 RIMBP3BA6NNM3 1639 aa11.67□□□□□ -0.54
UBXN4-205ENST00000467065 RIMBP3Q9UFD9 1639 aa11.67□□□□□ -0.54
UBXN4-205ENST00000467065 BIVM-ERCC5R4GMW8 1640 aa11.65□□□□□ -0.54
UBXN4-205ENST00000467065 TRIM41Q8WV44 630 aa11.65□□□□□ -0.54
UBXN4-205ENST00000467065 TDRD9Q8NDG6 1382 aaKnown RBP11.65□□□□□ -0.55
UBXN4-205ENST00000467065 ABCA5Q8WWZ7 1642 aa11.63□□□□□ -0.55
UBXN4-205ENST00000467065 SNAPC4Q5SXM2 1469 aa11.63□□□□□ -0.55
UBXN4-205ENST00000467065 SYNJ1O43426 1573 aa11.62□□□□□ -0.55
UBXN4-205ENST00000467065 C1QBPQ07021 282 aaKnown RBP11.62□□□□□ -0.55
UBXN4-205ENST00000467065 TOP2BQ02880 1626 aa11.61□□□□□ -0.55
UBXN4-205ENST00000467065 ARHGEF11O15085 1522 aa11.6□□□□□ -0.55
UBXN4-205ENST00000467065 ABCA10Q8WWZ4 1543 aa11.59□□□□□ -0.55
UBXN4-205ENST00000467065 GRIN2BQ13224 1484 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms