RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 NISCHQ9Y2I1 1504 aa18.16■□□□□ 0.5
USP4-207ENST00000462673 CCDC180Q9P1Z9 1646 aa16.07■□□□□ 0.16
USP4-207ENST00000462673 ABCC9O60706 1549 aa15.6■□□□□ 0.09
USP4-207ENST00000462673 DCAF8L2P0C7V8 631 aa15.31■□□□□ 0.04
USP4-207ENST00000462673 NACADO15069 1562 aa15.15■□□□□ 0.02
USP4-207ENST00000462673 RB1CC1Q8TDY2 1594 aa15.13■□□□□ 0.01
USP4-207ENST00000462673 ZCCHC6Q5VYS8 1495 aaKnown RBP15.11■□□□□ 0.01
USP4-207ENST00000462673 MYO15BQ96JP2 1530 aa15.11■□□□□ 0.01
USP4-207ENST00000462673 DCAF1Q9Y4B6 1507 aa15.07■□□□□ 0
USP4-207ENST00000462673 PABPN1Q86U42 306 aaKnown RBP eCLIP14.66□□□□□ -0.06
USP4-207ENST00000462673 AEBP2Q6ZN18 517 aaPredicted RBP14.65□□□□□ -0.06
USP4-207ENST00000462673 SCRIBQ14160 1630 aa14.62□□□□□ -0.07
USP4-207ENST00000462673 UNC13AQ9UPW8 1703 aa14.6□□□□□ -0.07
USP4-207ENST00000462673 SHROOM4Q9ULL8 1493 aa14.56□□□□□ -0.08
USP4-207ENST00000462673 BICRAQ9NZM4 1560 aa14.52□□□□□ -0.08
USP4-207ENST00000462673 EIF4G1Q04637 1599 aaKnown RBP14.21□□□□□ -0.14
USP4-207ENST00000462673 DNAJC5BQ9UF47 199 aa14.18□□□□□ -0.14
USP4-207ENST00000462673 CC2D2AQ9P2K1 1620 aa14.11□□□□□ -0.15
USP4-207ENST00000462673 BAZ1AQ9NRL2 1556 aaPredicted RBP14.1□□□□□ -0.15
USP4-207ENST00000462673 CECR2Q9BXF3 1484 aa14.06□□□□□ -0.16
USP4-207ENST00000462673 SMARCA4P51532 1647 aa14.02□□□□□ -0.16
USP4-207ENST00000462673 SMARCA2P51531 1590 aa14□□□□□ -0.17
USP4-207ENST00000462673 NCAPD3P42695 1498 aa13.99□□□□□ -0.17
USP4-207ENST00000462673 ATAD2BQ9ULI0 1458 aa13.96□□□□□ -0.17
USP4-207ENST00000462673 MROH2BQ7Z745 1585 aa13.94□□□□□ -0.18
USP4-207ENST00000462673 PEG3Q9GZU2 1588 aa13.91□□□□□ -0.18
USP4-207ENST00000462673 BAZ1BQ9UIG0 1483 aaKnown RBP13.89□□□□□ -0.19
USP4-207ENST00000462673 RSF1Q96T23 1441 aaPredicted RBP13.89□□□□□ -0.19
USP4-207ENST00000462673 HMGXB3Q12766 1538 aa13.87□□□□□ -0.19
USP4-207ENST00000462673 CHIC1Q5VXU3 224 aa13.85□□□□□ -0.19
USP4-207ENST00000462673 WIZO95785 1651 aa13.79□□□□□ -0.2
USP4-207ENST00000462673 SUPT5HO00267 1087 aaKnown RBP13.74□□□□□ -0.21
USP4-207ENST00000462673 TOP2AP11388 1531 aaKnown RBP13.69□□□□□ -0.22
USP4-207ENST00000462673 CADPSQ9ULU8 1353 aa13.61□□□□□ -0.23
USP4-207ENST00000462673 LAMC3Q9Y6N6 1575 aa13.58□□□□□ -0.24
USP4-207ENST00000462673 PDS5BQ9NTI5 1447 aa13.57□□□□□ -0.24
USP4-207ENST00000462673 CCDC88BA6NC98 1476 aa13.55□□□□□ -0.24
USP4-207ENST00000462673 ERCC6Q03468 1493 aa13.54□□□□□ -0.24
USP4-207ENST00000462673 CFTRP13569 1480 aa13.51□□□□□ -0.25
USP4-207ENST00000462673 NESP48681 1621 aa13.49□□□□□ -0.25
USP4-207ENST00000462673 FANCD2Q9BXW9 1451 aa13.4□□□□□ -0.26
USP4-207ENST00000462673 CEP164Q9UPV0 1460 aa13.39□□□□□ -0.27
USP4-207ENST00000462673 ABCC8Q09428 1581 aa13.33□□□□□ -0.28
USP4-207ENST00000462673 CUX2O14529 1486 aa13.33□□□□□ -0.28
USP4-207ENST00000462673 MRC2Q9UBG0 1479 aa13.32□□□□□ -0.28
USP4-207ENST00000462673 PRDM2Q13029 1718 aa13.32□□□□□ -0.28
USP4-207ENST00000462673 KIF21AQ7Z4S6 1674 aa13.31□□□□□ -0.28
USP4-207ENST00000462673 WDR62O43379 1518 aa13.23□□□□□ -0.29
USP4-207ENST00000462673 THOC2Q8NI27 1593 aaKnown RBP13.22□□□□□ -0.29
USP4-207ENST00000462673 URB2Q14146 1524 aaKnown RBP13.18□□□□□ -0.3
USP4-207ENST00000462673 DNMBPQ6XZF7 1577 aa13.17□□□□□ -0.3
USP4-207ENST00000462673 TOPBP1Q92547 1522 aa13.17□□□□□ -0.3
USP4-207ENST00000462673 WRNQ14191 1432 aaPredicted RBP eCLIP13.13□□□□□ -0.31
USP4-207ENST00000462673 IFT140Q96RY7 1462 aa13.12□□□□□ -0.31
USP4-207ENST00000462673 SOGA1O94964 1423 aa13.11□□□□□ -0.31
USP4-207ENST00000462673 CUX1P39880 1505 aa13.07□□□□□ -0.32
USP4-207ENST00000462673 POLA1P09884 1462 aaPredicted RBP13.05□□□□□ -0.32
USP4-207ENST00000462673 TRIM41Q8WV44 630 aa13.05□□□□□ -0.32
USP4-207ENST00000462673 FGD5Q6ZNL6 1462 aa13.04□□□□□ -0.32
USP4-207ENST00000462673 TOP2BQ02880 1626 aa13.03□□□□□ -0.32
USP4-207ENST00000462673 BIVM-ERCC5R4GMW8 1640 aa12.99□□□□□ -0.33
USP4-207ENST00000462673 WDR97A6NE52 1622 aa12.99□□□□□ -0.33
USP4-207ENST00000462673 RAD54L2Q9Y4B4 1467 aa12.98□□□□□ -0.33
USP4-207ENST00000462673 TDRD9Q8NDG6 1382 aaKnown RBP12.97□□□□□ -0.33
USP4-207ENST00000462673 TARBP1Q13395 1621 aaKnown RBP12.97□□□□□ -0.33
USP4-207ENST00000462673 SYNJ1O43426 1573 aa12.96□□□□□ -0.33
USP4-207ENST00000462673 ABCA10Q8WWZ4 1543 aa12.95□□□□□ -0.34
USP4-207ENST00000462673 AQRO60306 1485 aaKnown RBP eCLIP12.95□□□□□ -0.34
USP4-207ENST00000462673 ZNF608Q9ULD9 1512 aaPredicted RBP12.94□□□□□ -0.34
USP4-207ENST00000462673 GAPVD1Q14C86 1478 aa12.93□□□□□ -0.34
USP4-207ENST00000462673 OSCARQ8IYS5 282 aa12.93□□□□□ -0.34
USP4-207ENST00000462673 CHMP7Q8WUX9 453 aaPredicted RBP12.92□□□□□ -0.34
USP4-207ENST00000462673 GRIN2BQ13224 1484 aa12.91□□□□□ -0.34
USP4-207ENST00000462673 KIF27Q86VH2 1401 aa12.91□□□□□ -0.34
USP4-207ENST00000462673 FBLN2P98095 1184 aa12.9□□□□□ -0.34
USP4-207ENST00000462673 EIF4G3O43432 1585 aaKnown RBP12.88□□□□□ -0.35
USP4-207ENST00000462673 MAGI1Q96QZ7 1491 aaPredicted RBP12.85□□□□□ -0.35
USP4-207ENST00000462673 DNAJC5Q9H3Z4 198 aa12.83□□□□□ -0.36
USP4-207ENST00000462673 ERICH3Q5RHP9 1530 aa12.83□□□□□ -0.36
USP4-207ENST00000462673 ABCA5Q8WWZ7 1642 aa12.8□□□□□ -0.36
USP4-207ENST00000462673 SYNJ2O15056 1496 aa12.8□□□□□ -0.36
USP4-207ENST00000462673 SNAPC4Q5SXM2 1469 aa12.8□□□□□ -0.36
USP4-207ENST00000462673 IGF1RP08069 1367 aa12.8□□□□□ -0.36
USP4-207ENST00000462673 FHAD1B1AJZ9 1412 aa12.79□□□□□ -0.36
USP4-207ENST00000462673 EEA1Q15075 1411 aa12.78□□□□□ -0.36
USP4-207ENST00000462673 PBRM1Q86U86 1689 aa12.77□□□□□ -0.36
USP4-207ENST00000462673 CSRNP3Q8WYN3 585 aa12.76□□□□□ -0.37
USP4-207ENST00000462673 CARMIL1Q5VZK9 1371 aa12.76□□□□□ -0.37
USP4-207ENST00000462673 CUL7Q14999 1698 aa12.71□□□□□ -0.37
USP4-207ENST00000462673 GRIN2AQ12879 1464 aa12.7□□□□□ -0.38
USP4-207ENST00000462673 FAM9AQ8IZU1 332 aaPredicted RBP12.68□□□□□ -0.38
USP4-207ENST00000462673 ADAMTS12P58397 1594 aa12.68□□□□□ -0.38
USP4-207ENST00000462673 CHD1O14646 1710 aa12.68□□□□□ -0.38
USP4-207ENST00000462673 RAPGEF2Q9Y4G8 1499 aa12.67□□□□□ -0.38
USP4-207ENST00000462673 RUSC2Q8N2Y8 1516 aa12.66□□□□□ -0.38
USP4-207ENST00000462673 JPH4Q96JJ6 628 aa12.64□□□□□ -0.39
USP4-207ENST00000462673 NUP160Q12769 1436 aa12.63□□□□□ -0.39
USP4-207ENST00000462673 KIAA0586Q9BVV6 1533 aa12.61□□□□□ -0.39
USP4-207ENST00000462673 PRXQ9BXM0 1461 aa12.59□□□□□ -0.39
USP4-207ENST00000462673 UBTFP17480 764 aaKnown RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms