RNA–Protein interactions for RNA: ENST00000460185.1

HLA-DQB1-207, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 428 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-207ENST00000460185 AEBP2Q6ZN18 517 aaPredicted RBP28.42■■■□□ 2.14
HLA-DQB1-207ENST00000460185 CHIC1Q5VXU3 224 aa27.09■■□□□ 1.93
HLA-DQB1-207ENST00000460185 NISCHQ9Y2I1 1504 aa25.12■■□□□ 1.61
HLA-DQB1-207ENST00000460185 SENP3Q9H4L4 574 aaPredicted RBP24.24■■□□□ 1.47
HLA-DQB1-207ENST00000460185 PHF23Q9BUL5 403 aaPredicted RBP23.97■■□□□ 1.43
HLA-DQB1-207ENST00000460185 FOXD1Q16676 465 aa22.58■■□□□ 1.21
HLA-DQB1-207ENST00000460185 CCDC180Q9P1Z9 1646 aa22.51■■□□□ 1.19
HLA-DQB1-207ENST00000460185 ABCC9O60706 1549 aa21.82■■□□□ 1.08
HLA-DQB1-207ENST00000460185 PLPPR3Q6T4P5 718 aa21.73■■□□□ 1.07
HLA-DQB1-207ENST00000460185 PPP6R1Q9UPN7 881 aa21.22■□□□□ 0.99
HLA-DQB1-207ENST00000460185 ADRA2BP18089 450 aa21.17■□□□□ 0.98
HLA-DQB1-207ENST00000460185 PIAS4Q8N2W9 510 aaPredicted RBP21.14■□□□□ 0.97
HLA-DQB1-207ENST00000460185 RB1CC1Q8TDY2 1594 aa21.12■□□□□ 0.97
HLA-DQB1-207ENST00000460185 MSH5O43196 834 aa21.09■□□□□ 0.97
HLA-DQB1-207ENST00000460185 NACADO15069 1562 aa21.07■□□□□ 0.96
HLA-DQB1-207ENST00000460185 ZCCHC6Q5VYS8 1495 aaKnown RBP20.95■□□□□ 0.94
HLA-DQB1-207ENST00000460185 MYO15BQ96JP2 1530 aa20.94■□□□□ 0.94
HLA-DQB1-207ENST00000460185 DCAF8L2P0C7V8 631 aa20.87■□□□□ 0.93
HLA-DQB1-207ENST00000460185 DCAF1Q9Y4B6 1507 aa20.84■□□□□ 0.93
HLA-DQB1-207ENST00000460185 UNC13AQ9UPW8 1703 aa20.68■□□□□ 0.9
HLA-DQB1-207ENST00000460185 SCRIBQ14160 1630 aa20.43■□□□□ 0.86
HLA-DQB1-207ENST00000460185 POTEDQ86YR6 584 aa20.4■□□□□ 0.86
HLA-DQB1-207ENST00000460185 BICRAQ9NZM4 1560 aa20.38■□□□□ 0.85
HLA-DQB1-207ENST00000460185 SHROOM4Q9ULL8 1493 aa20.3■□□□□ 0.84
HLA-DQB1-207ENST00000460185 PABPN1Q86U42 306 aaKnown RBP eCLIP20.27■□□□□ 0.84
HLA-DQB1-207ENST00000460185 EIF4G1Q04637 1599 aaKnown RBP19.89■□□□□ 0.77
HLA-DQB1-207ENST00000460185 DNAJC5BQ9UF47 199 aa19.81■□□□□ 0.76
HLA-DQB1-207ENST00000460185 CC2D2AQ9P2K1 1620 aa19.8■□□□□ 0.76
HLA-DQB1-207ENST00000460185 CECR2Q9BXF3 1484 aa19.62■□□□□ 0.73
HLA-DQB1-207ENST00000460185 SMARCA4P51532 1647 aa19.56■□□□□ 0.72
HLA-DQB1-207ENST00000460185 BAZ1AQ9NRL2 1556 aaPredicted RBP19.54■□□□□ 0.72
HLA-DQB1-207ENST00000460185 SMARCA2P51531 1590 aa19.44■□□□□ 0.7
HLA-DQB1-207ENST00000460185 MAPK8IP2Q13387 824 aaPredicted RBP19.42■□□□□ 0.7
HLA-DQB1-207ENST00000460185 SCAF1Q9H7N4 1312 aaKnown RBP19.39■□□□□ 0.69
HLA-DQB1-207ENST00000460185 PEG3Q9GZU2 1588 aa19.36■□□□□ 0.69
HLA-DQB1-207ENST00000460185 HMGXB3Q12766 1538 aa19.36■□□□□ 0.69
HLA-DQB1-207ENST00000460185 ATAD2BQ9ULI0 1458 aa19.35■□□□□ 0.69
HLA-DQB1-207ENST00000460185 NCAPD3P42695 1498 aa19.35■□□□□ 0.69
HLA-DQB1-207ENST00000460185 MROH2BQ7Z745 1585 aa19.32■□□□□ 0.68
HLA-DQB1-207ENST00000460185 BAZ1BQ9UIG0 1483 aaKnown RBP19.27■□□□□ 0.67
HLA-DQB1-207ENST00000460185 DMRT2Q9Y5R5 561 aa19.23■□□□□ 0.67
HLA-DQB1-207ENST00000460185 WIZO95785 1651 aa19.18■□□□□ 0.66
HLA-DQB1-207ENST00000460185 PPP4R3CPQ6ZMV5 832 aa19.07■□□□□ 0.64
HLA-DQB1-207ENST00000460185 RSF1Q96T23 1441 aaPredicted RBP19.07■□□□□ 0.64
HLA-DQB1-207ENST00000460185 TOP2AP11388 1531 aaKnown RBP19■□□□□ 0.63
HLA-DQB1-207ENST00000460185 LAMC3Q9Y6N6 1575 aa18.96■□□□□ 0.63
HLA-DQB1-207ENST00000460185 ERCC6Q03468 1493 aa18.89■□□□□ 0.61
HLA-DQB1-207ENST00000460185 NESP48681 1621 aa18.85■□□□□ 0.61
HLA-DQB1-207ENST00000460185 PRDM2Q13029 1718 aa18.8■□□□□ 0.6
HLA-DQB1-207ENST00000460185 KIF21AQ7Z4S6 1674 aa18.79■□□□□ 0.6
HLA-DQB1-207ENST00000460185 CADPSQ9ULU8 1353 aa18.77■□□□□ 0.6
HLA-DQB1-207ENST00000460185 PDS5BQ9NTI5 1447 aa18.75■□□□□ 0.59
HLA-DQB1-207ENST00000460185 THOC2Q8NI27 1593 aaKnown RBP18.7■□□□□ 0.58
HLA-DQB1-207ENST00000460185 CFTRP13569 1480 aa18.69■□□□□ 0.58
HLA-DQB1-207ENST00000460185 CNKSR2Q8WXI2 1034 aa18.68■□□□□ 0.58
HLA-DQB1-207ENST00000460185 CUX2O14529 1486 aa18.68■□□□□ 0.58
HLA-DQB1-207ENST00000460185 CCDC88BA6NC98 1476 aa18.67■□□□□ 0.58
HLA-DQB1-207ENST00000460185 CEP164Q9UPV0 1460 aa18.63■□□□□ 0.57
HLA-DQB1-207ENST00000460185 FANCD2Q9BXW9 1451 aa18.6■□□□□ 0.57
HLA-DQB1-207ENST00000460185 MRC2Q9UBG0 1479 aa18.58■□□□□ 0.56
HLA-DQB1-207ENST00000460185 HOXD11P31277 338 aaPredicted RBP18.56■□□□□ 0.56
HLA-DQB1-207ENST00000460185 SUPT5HO00267 1087 aaKnown RBP18.55■□□□□ 0.56
HLA-DQB1-207ENST00000460185 WDR62O43379 1518 aa18.54■□□□□ 0.56
HLA-DQB1-207ENST00000460185 DCAF8L1A6NGE4 600 aa18.52■□□□□ 0.56
HLA-DQB1-207ENST00000460185 RNF216Q9NWF9 866 aaPredicted RBP18.47■□□□□ 0.55
HLA-DQB1-207ENST00000460185 URB2Q14146 1524 aaKnown RBP18.39■□□□□ 0.53
HLA-DQB1-207ENST00000460185 NCBP3Q53F19 620 aaKnown RBP18.38■□□□□ 0.53
HLA-DQB1-207ENST00000460185 ABCC8Q09428 1581 aa18.37■□□□□ 0.53
HLA-DQB1-207ENST00000460185 DNMBPQ6XZF7 1577 aa18.35■□□□□ 0.53
HLA-DQB1-207ENST00000460185 TOPBP1Q92547 1522 aa18.3■□□□□ 0.52
HLA-DQB1-207ENST00000460185 IFT140Q96RY7 1462 aa18.2■□□□□ 0.5
HLA-DQB1-207ENST00000460185 CUX1P39880 1505 aa18.15■□□□□ 0.5
HLA-DQB1-207ENST00000460185 POLA1P09884 1462 aaPredicted RBP18.14■□□□□ 0.5
HLA-DQB1-207ENST00000460185 TARBP1Q13395 1621 aaKnown RBP18.13■□□□□ 0.49
HLA-DQB1-207ENST00000460185 EIF4G3O43432 1585 aaKnown RBP18.13■□□□□ 0.49
HLA-DQB1-207ENST00000460185 FGD5Q6ZNL6 1462 aa18.11■□□□□ 0.49
HLA-DQB1-207ENST00000460185 BIVM-ERCC5R4GMW8 1640 aa18.11■□□□□ 0.49
HLA-DQB1-207ENST00000460185 WDR97A6NE52 1622 aa18.1■□□□□ 0.49
HLA-DQB1-207ENST00000460185 NPM3O75607 178 aaKnown RBP18.09■□□□□ 0.49
HLA-DQB1-207ENST00000460185 CACNB1Q02641 598 aaPredicted RBP18.07■□□□□ 0.48
HLA-DQB1-207ENST00000460185 TOP2BQ02880 1626 aa18.07■□□□□ 0.48
HLA-DQB1-207ENST00000460185 WRNQ14191 1432 aaPredicted RBP eCLIP18.05■□□□□ 0.48
HLA-DQB1-207ENST00000460185 ZNF608Q9ULD9 1512 aaPredicted RBP18.04■□□□□ 0.48
HLA-DQB1-207ENST00000460185 SOGA1O94964 1423 aa18.03■□□□□ 0.48
HLA-DQB1-207ENST00000460185 SYNJ1O43426 1573 aa18.03■□□□□ 0.48
HLA-DQB1-207ENST00000460185 RAD54L2Q9Y4B4 1467 aa18.01■□□□□ 0.47
HLA-DQB1-207ENST00000460185 RNF39Q9H2S5 420 aa17.99■□□□□ 0.47
HLA-DQB1-207ENST00000460185 PBRM1Q86U86 1689 aa17.97■□□□□ 0.47
HLA-DQB1-207ENST00000460185 DNAJC5Q9H3Z4 198 aa17.94■□□□□ 0.46
HLA-DQB1-207ENST00000460185 ABCA10Q8WWZ4 1543 aa17.93■□□□□ 0.46
HLA-DQB1-207ENST00000460185 ABCA5Q8WWZ7 1642 aa17.93■□□□□ 0.46
HLA-DQB1-207ENST00000460185 AQRO60306 1485 aaKnown RBP eCLIP17.93■□□□□ 0.46
HLA-DQB1-207ENST00000460185 CHD1O14646 1710 aa17.92■□□□□ 0.46
HLA-DQB1-207ENST00000460185 TDRD9Q8NDG6 1382 aaKnown RBP17.89■□□□□ 0.45
HLA-DQB1-207ENST00000460185 GRIN2BQ13224 1484 aa17.88■□□□□ 0.45
HLA-DQB1-207ENST00000460185 GAPVD1Q14C86 1478 aa17.87■□□□□ 0.45
HLA-DQB1-207ENST00000460185 MAGI1Q96QZ7 1491 aaPredicted RBP17.87■□□□□ 0.45
HLA-DQB1-207ENST00000460185 SNAPC4Q5SXM2 1469 aa17.84■□□□□ 0.45
HLA-DQB1-207ENST00000460185 KCNA4P22459 653 aa17.84■□□□□ 0.45
HLA-DQB1-207ENST00000460185 OSCARQ8IYS5 282 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms