RNA–Protein interactions for RNA: ENST00000459954.1

UBQLN4-202, Transcript of ubiquilin 4, humanhuman

TSL 2

Gene UBQLN4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4-202ENST00000459954 NISCHQ9Y2I1 1504 aa12.88□□□□□ -0.35
UBQLN4-202ENST00000459954 CCDC180Q9P1Z9 1646 aa11.42□□□□□ -0.58
UBQLN4-202ENST00000459954 ABCC9O60706 1549 aa11□□□□□ -0.65
UBQLN4-202ENST00000459954 AEBP2Q6ZN18 517 aaPredicted RBP10.99□□□□□ -0.65
UBQLN4-202ENST00000459954 MYO15BQ96JP2 1530 aa10.84□□□□□ -0.67
UBQLN4-202ENST00000459954 NACADO15069 1562 aa10.79□□□□□ -0.68
UBQLN4-202ENST00000459954 DCAF1Q9Y4B6 1507 aa10.78□□□□□ -0.68
UBQLN4-202ENST00000459954 ZCCHC6Q5VYS8 1495 aaKnown RBP10.76□□□□□ -0.69
UBQLN4-202ENST00000459954 RB1CC1Q8TDY2 1594 aa10.74□□□□□ -0.69
UBQLN4-202ENST00000459954 DCAF8L2P0C7V8 631 aa10.7□□□□□ -0.7
UBQLN4-202ENST00000459954 SHROOM4Q9ULL8 1493 aa10.49□□□□□ -0.73
UBQLN4-202ENST00000459954 CHIC1Q5VXU3 224 aa10.45□□□□□ -0.74
UBQLN4-202ENST00000459954 SUPT5HO00267 1087 aaKnown RBP10.36□□□□□ -0.75
UBQLN4-202ENST00000459954 PABPN1Q86U42 306 aaKnown RBP eCLIP10.31□□□□□ -0.76
UBQLN4-202ENST00000459954 BICRAQ9NZM4 1560 aa10.3□□□□□ -0.76
UBQLN4-202ENST00000459954 UNC13AQ9UPW8 1703 aa10.29□□□□□ -0.76
UBQLN4-202ENST00000459954 SCRIBQ14160 1630 aa10.29□□□□□ -0.76
UBQLN4-202ENST00000459954 EIF4G1Q04637 1599 aaKnown RBP10.07□□□□□ -0.8
UBQLN4-202ENST00000459954 HRCP23327 699 aa10.05□□□□□ -0.8
UBQLN4-202ENST00000459954 DNAJC5BQ9UF47 199 aa10.02□□□□□ -0.81
UBQLN4-202ENST00000459954 BAZ1AQ9NRL2 1556 aaPredicted RBP10.01□□□□□ -0.81
UBQLN4-202ENST00000459954 RSF1Q96T23 1441 aaPredicted RBP9.99□□□□□ -0.81
UBQLN4-202ENST00000459954 CC2D2AQ9P2K1 1620 aa9.97□□□□□ -0.81
UBQLN4-202ENST00000459954 NCAPD3P42695 1498 aa9.97□□□□□ -0.81
UBQLN4-202ENST00000459954 CECR2Q9BXF3 1484 aa9.96□□□□□ -0.82
UBQLN4-202ENST00000459954 SMARCA2P51531 1590 aa9.96□□□□□ -0.82
UBQLN4-202ENST00000459954 SMARCA4P51532 1647 aa9.93□□□□□ -0.82
UBQLN4-202ENST00000459954 PEG3Q9GZU2 1588 aa9.92□□□□□ -0.82
UBQLN4-202ENST00000459954 ATAD2BQ9ULI0 1458 aa9.91□□□□□ -0.82
UBQLN4-202ENST00000459954 HMGXB3Q12766 1538 aa9.88□□□□□ -0.83
UBQLN4-202ENST00000459954 PCGF6Q9BYE7 350 aa9.86□□□□□ -0.83
UBQLN4-202ENST00000459954 MROH2BQ7Z745 1585 aa9.84□□□□□ -0.83
UBQLN4-202ENST00000459954 TRIM26Q12899 539 aaPredicted RBP9.84□□□□□ -0.83
UBQLN4-202ENST00000459954 BAZ1BQ9UIG0 1483 aaKnown RBP9.84□□□□□ -0.83
UBQLN4-202ENST00000459954 LOC105371045A0A1W2PR82 267 aa9.8□□□□□ -0.84
UBQLN4-202ENST00000459954 WIZO95785 1651 aa9.77□□□□□ -0.84
UBQLN4-202ENST00000459954 ZEB1P37275 1124 aaPredicted RBP9.77□□□□□ -0.85
UBQLN4-202ENST00000459954 TRIM41Q8WV44 630 aa9.76□□□□□ -0.85
UBQLN4-202ENST00000459954 TOP2AP11388 1531 aaKnown RBP9.71□□□□□ -0.86
UBQLN4-202ENST00000459954 CADPSQ9ULU8 1353 aa9.67□□□□□ -0.86
UBQLN4-202ENST00000459954 LAMC3Q9Y6N6 1575 aa9.66□□□□□ -0.86
UBQLN4-202ENST00000459954 PDS5BQ9NTI5 1447 aa9.65□□□□□ -0.86
UBQLN4-202ENST00000459954 CFTRP13569 1480 aa9.61□□□□□ -0.87
UBQLN4-202ENST00000459954 PPARGC1BQ86YN6 1023 aaKnown RBP9.6□□□□□ -0.87
UBQLN4-202ENST00000459954 EEA1Q15075 1411 aa9.59□□□□□ -0.87
UBQLN4-202ENST00000459954 CCDC88BA6NC98 1476 aa9.58□□□□□ -0.88
UBQLN4-202ENST00000459954 ERCC6Q03468 1493 aa9.57□□□□□ -0.88
UBQLN4-202ENST00000459954 WRNQ14191 1432 aaPredicted RBP eCLIP9.56□□□□□ -0.88
UBQLN4-202ENST00000459954 CUX2O14529 1486 aa9.52□□□□□ -0.89
UBQLN4-202ENST00000459954 NESP48681 1621 aa9.51□□□□□ -0.89
UBQLN4-202ENST00000459954 ABCC8Q09428 1581 aa9.5□□□□□ -0.89
UBQLN4-202ENST00000459954 FAM9AQ8IZU1 332 aaPredicted RBP9.5□□□□□ -0.89
UBQLN4-202ENST00000459954 FANCD2Q9BXW9 1451 aa9.5□□□□□ -0.89
UBQLN4-202ENST00000459954 CEP164Q9UPV0 1460 aa9.49□□□□□ -0.89
UBQLN4-202ENST00000459954 TNIKQ9UKE5 1360 aa9.49□□□□□ -0.89
UBQLN4-202ENST00000459954 MRC2Q9UBG0 1479 aa9.46□□□□□ -0.9
UBQLN4-202ENST00000459954 KIF21BO75037 1637 aa9.45□□□□□ -0.9
UBQLN4-202ENST00000459954 GOLGA3Q08378 1498 aa9.42□□□□□ -0.9
UBQLN4-202ENST00000459954 CEP162Q5TB80 1403 aa9.42□□□□□ -0.9
UBQLN4-202ENST00000459954 PRDM2Q13029 1718 aa9.42□□□□□ -0.9
UBQLN4-202ENST00000459954 WDR62O43379 1518 aa9.41□□□□□ -0.9
UBQLN4-202ENST00000459954 CSRNP3Q8WYN3 585 aa9.4□□□□□ -0.9
UBQLN4-202ENST00000459954 THOC2Q8NI27 1593 aaKnown RBP9.37□□□□□ -0.91
UBQLN4-202ENST00000459954 KIF21AQ7Z4S6 1674 aa9.37□□□□□ -0.91
UBQLN4-202ENST00000459954 SENP3Q9H4L4 574 aaPredicted RBP9.37□□□□□ -0.91
UBQLN4-202ENST00000459954 SOGA1O94964 1423 aa9.37□□□□□ -0.91
UBQLN4-202ENST00000459954 BIVM-ERCC5R4GMW8 1640 aa9.35□□□□□ -0.91
UBQLN4-202ENST00000459954 SYNJ1O43426 1573 aa9.34□□□□□ -0.91
UBQLN4-202ENST00000459954 PELP1Q8IZL8 1130 aaKnown RBP9.34□□□□□ -0.91
UBQLN4-202ENST00000459954 URB2Q14146 1524 aaKnown RBP9.34□□□□□ -0.91
UBQLN4-202ENST00000459954 DNMBPQ6XZF7 1577 aa9.33□□□□□ -0.92
UBQLN4-202ENST00000459954 TOPBP1Q92547 1522 aa9.33□□□□□ -0.92
UBQLN4-202ENST00000459954 TOP2BQ02880 1626 aa9.33□□□□□ -0.92
UBQLN4-202ENST00000459954 IFT140Q96RY7 1462 aa9.33□□□□□ -0.92
UBQLN4-202ENST00000459954 RUSC2Q8N2Y8 1516 aa9.31□□□□□ -0.92
UBQLN4-202ENST00000459954 CCER1Q8TC90 406 aaPredicted RBP9.31□□□□□ -0.92
UBQLN4-202ENST00000459954 ERICH3Q5RHP9 1530 aa9.29□□□□□ -0.92
UBQLN4-202ENST00000459954 WDR97A6NE52 1622 aa9.28□□□□□ -0.92
UBQLN4-202ENST00000459954 EHMT2Q96KQ7 1210 aa9.27□□□□□ -0.93
UBQLN4-202ENST00000459954 VPS8Q8N3P4 1428 aa9.26□□□□□ -0.93
UBQLN4-202ENST00000459954 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.25□□□□□ -0.93
UBQLN4-202ENST00000459954 UBTFP17480 764 aaKnown RBP9.25□□□□□ -0.93
UBQLN4-202ENST00000459954 POLA1P09884 1462 aaPredicted RBP9.25□□□□□ -0.93
UBQLN4-202ENST00000459954 CUX1P39880 1505 aa9.25□□□□□ -0.93
UBQLN4-202ENST00000459954 CLIP1P30622 1438 aa9.24□□□□□ -0.93
UBQLN4-202ENST00000459954 PHF23Q9BUL5 403 aaPredicted RBP9.24□□□□□ -0.93
UBQLN4-202ENST00000459954 FGD5Q6ZNL6 1462 aa9.22□□□□□ -0.93
UBQLN4-202ENST00000459954 ABCA10Q8WWZ4 1543 aa9.21□□□□□ -0.93
UBQLN4-202ENST00000459954 PRXQ9BXM0 1461 aa9.2□□□□□ -0.94
UBQLN4-202ENST00000459954 TARBP1Q13395 1621 aaKnown RBP9.2□□□□□ -0.94
UBQLN4-202ENST00000459954 DIEXFQ68CQ4 756 aaKnown RBP9.19□□□□□ -0.94
UBQLN4-202ENST00000459954 SCAF1Q9H7N4 1312 aaKnown RBP9.19□□□□□ -0.94
UBQLN4-202ENST00000459954 CLSPNQ9HAW4 1339 aa9.19□□□□□ -0.94
UBQLN4-202ENST00000459954 RAPGEF2Q9Y4G8 1499 aa9.19□□□□□ -0.94
UBQLN4-202ENST00000459954 CENPBP07199 599 aaPredicted RBP9.18□□□□□ -0.94
UBQLN4-202ENST00000459954 ACIN1Q9UKV3 1341 aaKnown RBP9.18□□□□□ -0.94
UBQLN4-202ENST00000459954 GRIN2BQ13224 1484 aa9.17□□□□□ -0.94
UBQLN4-202ENST00000459954 ZNF316A6NFI3 1004 aaPredicted RBP9.17□□□□□ -0.94
UBQLN4-202ENST00000459954 OSCARQ8IYS5 282 aa9.17□□□□□ -0.94
UBQLN4-202ENST00000459954 GAPVD1Q14C86 1478 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms