RNA–Protein interactions for RNA: ENST00000453349.5

NCKIPSD-207, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-207ENST00000453349 NISCHQ9Y2I1 1504 aa34.8■■■■□ 3.16
NCKIPSD-207ENST00000453349 CCDC180Q9P1Z9 1646 aa30.79■■■□□ 2.52
NCKIPSD-207ENST00000453349 ABCC9O60706 1549 aa29.92■■■□□ 2.38
NCKIPSD-207ENST00000453349 DCAF8L2P0C7V8 631 aa29.13■■■□□ 2.25
NCKIPSD-207ENST00000453349 ZCCHC6Q5VYS8 1495 aaKnown RBP29■■■□□ 2.23
NCKIPSD-207ENST00000453349 NACADO15069 1562 aa28.92■■■□□ 2.22
NCKIPSD-207ENST00000453349 RB1CC1Q8TDY2 1594 aa28.9■■■□□ 2.22
NCKIPSD-207ENST00000453349 MYO15BQ96JP2 1530 aa28.81■■■□□ 2.2
NCKIPSD-207ENST00000453349 DCAF1Q9Y4B6 1507 aa28.79■■■□□ 2.2
NCKIPSD-207ENST00000453349 UNC13AQ9UPW8 1703 aa28.18■■■□□ 2.1
NCKIPSD-207ENST00000453349 SCRIBQ14160 1630 aa28.13■■■□□ 2.09
NCKIPSD-207ENST00000453349 PABPN1Q86U42 306 aaKnown RBP eCLIP28.05■■■□□ 2.08
NCKIPSD-207ENST00000453349 BICRAQ9NZM4 1560 aa27.95■■■□□ 2.07
NCKIPSD-207ENST00000453349 SHROOM4Q9ULL8 1493 aa27.7■■■□□ 2.03
NCKIPSD-207ENST00000453349 DNAJC5BQ9UF47 199 aa27.22■■□□□ 1.95
NCKIPSD-207ENST00000453349 EIF4G1Q04637 1599 aaKnown RBP27.22■■□□□ 1.95
NCKIPSD-207ENST00000453349 CECR2Q9BXF3 1484 aa27.07■■□□□ 1.92
NCKIPSD-207ENST00000453349 CC2D2AQ9P2K1 1620 aa27.06■■□□□ 1.92
NCKIPSD-207ENST00000453349 BAZ1AQ9NRL2 1556 aaPredicted RBP26.97■■□□□ 1.91
NCKIPSD-207ENST00000453349 SMARCA4P51532 1647 aa26.92■■□□□ 1.9
NCKIPSD-207ENST00000453349 MROH2BQ7Z745 1585 aa26.81■■□□□ 1.88
NCKIPSD-207ENST00000453349 ATAD2BQ9ULI0 1458 aa26.74■■□□□ 1.87
NCKIPSD-207ENST00000453349 SMARCA2P51531 1590 aa26.72■■□□□ 1.87
NCKIPSD-207ENST00000453349 NCAPD3P42695 1498 aa26.68■■□□□ 1.86
NCKIPSD-207ENST00000453349 PEG3Q9GZU2 1588 aa26.64■■□□□ 1.86
NCKIPSD-207ENST00000453349 RSF1Q96T23 1441 aaPredicted RBP26.62■■□□□ 1.85
NCKIPSD-207ENST00000453349 BAZ1BQ9UIG0 1483 aaKnown RBP26.55■■□□□ 1.84
NCKIPSD-207ENST00000453349 HMGXB3Q12766 1538 aa26.55■■□□□ 1.84
NCKIPSD-207ENST00000453349 WIZO95785 1651 aa26.54■■□□□ 1.84
NCKIPSD-207ENST00000453349 TOP2AP11388 1531 aaKnown RBP26.27■■□□□ 1.8
NCKIPSD-207ENST00000453349 SUPT5HO00267 1087 aaKnown RBP26.25■■□□□ 1.79
NCKIPSD-207ENST00000453349 CCDC88BA6NC98 1476 aa25.99■■□□□ 1.75
NCKIPSD-207ENST00000453349 CADPSQ9ULU8 1353 aa25.95■■□□□ 1.75
NCKIPSD-207ENST00000453349 NESP48681 1621 aa25.95■■□□□ 1.74
NCKIPSD-207ENST00000453349 LAMC3Q9Y6N6 1575 aa25.95■■□□□ 1.74
NCKIPSD-207ENST00000453349 CFTRP13569 1480 aa25.82■■□□□ 1.72
NCKIPSD-207ENST00000453349 PDS5BQ9NTI5 1447 aa25.8■■□□□ 1.72
NCKIPSD-207ENST00000453349 ERCC6Q03468 1493 aa25.8■■□□□ 1.72
NCKIPSD-207ENST00000453349 FANCD2Q9BXW9 1451 aa25.64■■□□□ 1.69
NCKIPSD-207ENST00000453349 KIF21AQ7Z4S6 1674 aa25.63■■□□□ 1.69
NCKIPSD-207ENST00000453349 PRDM2Q13029 1718 aa25.61■■□□□ 1.69
NCKIPSD-207ENST00000453349 CEP164Q9UPV0 1460 aa25.58■■□□□ 1.69
NCKIPSD-207ENST00000453349 MRC2Q9UBG0 1479 aa25.47■■□□□ 1.67
NCKIPSD-207ENST00000453349 THOC2Q8NI27 1593 aaKnown RBP25.45■■□□□ 1.66
NCKIPSD-207ENST00000453349 CUX2O14529 1486 aa25.4■■□□□ 1.66
NCKIPSD-207ENST00000453349 WDR62O43379 1518 aa25.35■■□□□ 1.65
NCKIPSD-207ENST00000453349 URB2Q14146 1524 aaKnown RBP25.32■■□□□ 1.64
NCKIPSD-207ENST00000453349 ABCC8Q09428 1581 aa25.31■■□□□ 1.64
NCKIPSD-207ENST00000453349 TOPBP1Q92547 1522 aa25.24■■□□□ 1.63
NCKIPSD-207ENST00000453349 DNMBPQ6XZF7 1577 aa25.22■■□□□ 1.63
NCKIPSD-207ENST00000453349 CUX1P39880 1505 aa25.13■■□□□ 1.61
NCKIPSD-207ENST00000453349 WRNQ14191 1432 aaPredicted RBP eCLIP25.12■■□□□ 1.61
NCKIPSD-207ENST00000453349 IFT140Q96RY7 1462 aa25.04■■□□□ 1.6
NCKIPSD-207ENST00000453349 POLA1P09884 1462 aaPredicted RBP25.02■■□□□ 1.6
NCKIPSD-207ENST00000453349 FGD5Q6ZNL6 1462 aa25.02■■□□□ 1.6
NCKIPSD-207ENST00000453349 SOGA1O94964 1423 aa25.01■■□□□ 1.59
NCKIPSD-207ENST00000453349 TOP2BQ02880 1626 aa25■■□□□ 1.59
NCKIPSD-207ENST00000453349 BIVM-ERCC5R4GMW8 1640 aa24.98■■□□□ 1.59
NCKIPSD-207ENST00000453349 SYNJ1O43426 1573 aa24.97■■□□□ 1.59
NCKIPSD-207ENST00000453349 RAD54L2Q9Y4B4 1467 aa24.94■■□□□ 1.58
NCKIPSD-207ENST00000453349 TARBP1Q13395 1621 aaKnown RBP24.91■■□□□ 1.58
NCKIPSD-207ENST00000453349 ZNF608Q9ULD9 1512 aaPredicted RBP24.86■■□□□ 1.57
NCKIPSD-207ENST00000453349 TDRD9Q8NDG6 1382 aaKnown RBP24.81■■□□□ 1.56
NCKIPSD-207ENST00000453349 TRIM41Q8WV44 630 aa24.8■■□□□ 1.56
NCKIPSD-207ENST00000453349 AQRO60306 1485 aaKnown RBP eCLIP24.8■■□□□ 1.566e-7■■■■■ 27.6
NCKIPSD-207ENST00000453349 ABCA10Q8WWZ4 1543 aa24.8■■□□□ 1.56
NCKIPSD-207ENST00000453349 EIF4G3O43432 1585 aaKnown RBP24.76■■□□□ 1.55
NCKIPSD-207ENST00000453349 WDR97A6NE52 1622 aa24.75■■□□□ 1.55
NCKIPSD-207ENST00000453349 GAPVD1Q14C86 1478 aa24.7■■□□□ 1.54
NCKIPSD-207ENST00000453349 GRIN2BQ13224 1484 aa24.64■■□□□ 1.54
NCKIPSD-207ENST00000453349 ABCA5Q8WWZ7 1642 aa24.64■■□□□ 1.53
NCKIPSD-207ENST00000453349 CHIC1Q5VXU3 224 aa24.62■■□□□ 1.53
NCKIPSD-207ENST00000453349 KIF27Q86VH2 1401 aa24.59■■□□□ 1.53
NCKIPSD-207ENST00000453349 PBRM1Q86U86 1689 aa24.58■■□□□ 1.53
NCKIPSD-207ENST00000453349 SNAPC4Q5SXM2 1469 aa24.56■■□□□ 1.52
NCKIPSD-207ENST00000453349 FBLN2P98095 1184 aa24.55■■□□□ 1.52
NCKIPSD-207ENST00000453349 MAGI1Q96QZ7 1491 aaPredicted RBP24.54■■□□□ 1.52
NCKIPSD-207ENST00000453349 ERICH3Q5RHP9 1530 aa24.51■■□□□ 1.51
NCKIPSD-207ENST00000453349 CHMP7Q8WUX9 453 aaPredicted RBP24.51■■□□□ 1.51
NCKIPSD-207ENST00000453349 OSCARQ8IYS5 282 aa24.49■■□□□ 1.51
NCKIPSD-207ENST00000453349 IGF1RP08069 1367 aa24.45■■□□□ 1.5
NCKIPSD-207ENST00000453349 SYNJ2O15056 1496 aa24.45■■□□□ 1.5
NCKIPSD-207ENST00000453349 FHAD1B1AJZ9 1412 aa24.42■■□□□ 1.5
NCKIPSD-207ENST00000453349 CHD1O14646 1710 aa24.41■■□□□ 1.5
NCKIPSD-207ENST00000453349 RUSC2Q8N2Y8 1516 aa24.4■■□□□ 1.5
NCKIPSD-207ENST00000453349 ADAMTS12P58397 1594 aa24.37■■□□□ 1.49
NCKIPSD-207ENST00000453349 DNAJC5Q9H3Z4 198 aa24.36■■□□□ 1.49
NCKIPSD-207ENST00000453349 CUL7Q14999 1698 aa24.34■■□□□ 1.49
NCKIPSD-207ENST00000453349 CARMIL1Q5VZK9 1371 aa24.33■■□□□ 1.49
NCKIPSD-207ENST00000453349 GRIN2AQ12879 1464 aa24.31■■□□□ 1.48
NCKIPSD-207ENST00000453349 EEA1Q15075 1411 aa24.3■■□□□ 1.48
NCKIPSD-207ENST00000453349 CSRNP3Q8WYN3 585 aa24.28■■□□□ 1.48
NCKIPSD-207ENST00000453349 FAM9AQ8IZU1 332 aaPredicted RBP24.26■■□□□ 1.47
NCKIPSD-207ENST00000453349 RAPGEF2Q9Y4G8 1499 aa24.2■■□□□ 1.47
NCKIPSD-207ENST00000453349 NUP160Q12769 1436 aa24.18■■□□□ 1.46
NCKIPSD-207ENST00000453349 CEP170Q5SW79 1584 aa24.15■■□□□ 1.46
NCKIPSD-207ENST00000453349 CLASP1Q7Z460 1538 aa24.14■■□□□ 1.45
NCKIPSD-207ENST00000453349 PRXQ9BXM0 1461 aa24.13■■□□□ 1.45
NCKIPSD-207ENST00000453349 KIAA0586Q9BVV6 1533 aa24.05■■□□□ 1.44
NCKIPSD-207ENST00000453349 JPH4Q96JJ6 628 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 153.8 ms