RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-205ENST00000452322 NISCHQ9Y2I1 1504 aa28.38■■■□□ 2.13
LINC00339-205ENST00000452322 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
LINC00339-205ENST00000452322 ABCC9O60706 1549 aa24.23■■□□□ 1.47
LINC00339-205ENST00000452322 ZCCHC6Q5VYS8 1495 aaKnown RBP23.73■■□□□ 1.39
LINC00339-205ENST00000452322 NACADO15069 1562 aa23.53■■□□□ 1.36
LINC00339-205ENST00000452322 DCAF1Q9Y4B6 1507 aa23.53■■□□□ 1.36
LINC00339-205ENST00000452322 MYO15BQ96JP2 1530 aa23.52■■□□□ 1.36
LINC00339-205ENST00000452322 DCAF8L2P0C7V8 631 aa23.52■■□□□ 1.36
LINC00339-205ENST00000452322 RB1CC1Q8TDY2 1594 aa23.48■■□□□ 1.35
LINC00339-205ENST00000452322 UNC13AQ9UPW8 1703 aa22.94■■□□□ 1.26
LINC00339-205ENST00000452322 SCRIBQ14160 1630 aa22.91■■□□□ 1.26
LINC00339-205ENST00000452322 BICRAQ9NZM4 1560 aa22.74■■□□□ 1.23
LINC00339-205ENST00000452322 PABPN1Q86U42 306 aaKnown RBP eCLIP22.66■■□□□ 1.22
LINC00339-205ENST00000452322 SHROOM4Q9ULL8 1493 aa22.59■■□□□ 1.21
LINC00339-205ENST00000452322 EIF4G1Q04637 1599 aaKnown RBP22.13■■□□□ 1.13
LINC00339-205ENST00000452322 CECR2Q9BXF3 1484 aa22.05■■□□□ 1.12
LINC00339-205ENST00000452322 BAZ1AQ9NRL2 1556 aaPredicted RBP21.99■■□□□ 1.11
LINC00339-205ENST00000452322 SMARCA4P51532 1647 aa21.96■■□□□ 1.11
LINC00339-205ENST00000452322 CC2D2AQ9P2K1 1620 aa21.95■■□□□ 1.1
LINC00339-205ENST00000452322 DNAJC5BQ9UF47 199 aa21.92■■□□□ 1.1
LINC00339-205ENST00000452322 MROH2BQ7Z745 1585 aa21.87■■□□□ 1.09
LINC00339-205ENST00000452322 SMARCA2P51531 1590 aa21.76■■□□□ 1.07
LINC00339-205ENST00000452322 PEG3Q9GZU2 1588 aa21.76■■□□□ 1.07
LINC00339-205ENST00000452322 ATAD2BQ9ULI0 1458 aa21.75■■□□□ 1.07
LINC00339-205ENST00000452322 RSF1Q96T23 1441 aaPredicted RBP21.73■■□□□ 1.07
LINC00339-205ENST00000452322 NCAPD3P42695 1498 aa21.71■■□□□ 1.07
LINC00339-205ENST00000452322 HMGXB3Q12766 1538 aa21.65■■□□□ 1.06
LINC00339-205ENST00000452322 WIZO95785 1651 aa21.64■■□□□ 1.05
LINC00339-205ENST00000452322 BAZ1BQ9UIG0 1483 aaKnown RBP21.59■■□□□ 1.05
LINC00339-205ENST00000452322 TOP2AP11388 1531 aaKnown RBP21.46■■□□□ 1.03
LINC00339-205ENST00000452322 SUPT5HO00267 1087 aaKnown RBP21.36■■□□□ 1.01
LINC00339-205ENST00000452322 AEBP2Q6ZN18 517 aaPredicted RBP21.29■■□□□ 1
LINC00339-205ENST00000452322 CCDC88BA6NC98 1476 aa21.18■□□□□ 0.98
LINC00339-205ENST00000452322 LAMC3Q9Y6N6 1575 aa21.09■□□□□ 0.97
LINC00339-205ENST00000452322 CADPSQ9ULU8 1353 aa21.08■□□□□ 0.97
LINC00339-205ENST00000452322 NESP48681 1621 aa21.06■□□□□ 0.96
LINC00339-205ENST00000452322 CFTRP13569 1480 aa21.02■□□□□ 0.96
LINC00339-205ENST00000452322 PDS5BQ9NTI5 1447 aa20.92■□□□□ 0.94
LINC00339-205ENST00000452322 PRDM2Q13029 1718 aa20.91■□□□□ 0.94
LINC00339-205ENST00000452322 ERCC6Q03468 1493 aa20.86■□□□□ 0.93
LINC00339-205ENST00000452322 KIF21AQ7Z4S6 1674 aa20.84■□□□□ 0.93
LINC00339-205ENST00000452322 FANCD2Q9BXW9 1451 aa20.83■□□□□ 0.93
LINC00339-205ENST00000452322 CEP164Q9UPV0 1460 aa20.79■□□□□ 0.92
LINC00339-205ENST00000452322 THOC2Q8NI27 1593 aaKnown RBP20.71■□□□□ 0.91
LINC00339-205ENST00000452322 MRC2Q9UBG0 1479 aa20.7■□□□□ 0.9
LINC00339-205ENST00000452322 WDR62O43379 1518 aa20.63■□□□□ 0.89
LINC00339-205ENST00000452322 URB2Q14146 1524 aaKnown RBP20.61■□□□□ 0.89
LINC00339-205ENST00000452322 ABCC8Q09428 1581 aa20.58■□□□□ 0.88
LINC00339-205ENST00000452322 DNMBPQ6XZF7 1577 aa20.56■□□□□ 0.88
LINC00339-205ENST00000452322 CUX2O14529 1486 aa20.56■□□□□ 0.88
LINC00339-205ENST00000452322 TOPBP1Q92547 1522 aa20.54■□□□□ 0.88
LINC00339-205ENST00000452322 CUX1P39880 1505 aa20.5■□□□□ 0.87
LINC00339-205ENST00000452322 WRNQ14191 1432 aaPredicted RBP eCLIP20.48■□□□□ 0.87
LINC00339-205ENST00000452322 TOP2BQ02880 1626 aa20.42■□□□□ 0.86
LINC00339-205ENST00000452322 BIVM-ERCC5R4GMW8 1640 aa20.42■□□□□ 0.86
LINC00339-205ENST00000452322 SYNJ1O43426 1573 aa20.42■□□□□ 0.86
LINC00339-205ENST00000452322 POLA1P09884 1462 aaPredicted RBP20.39■□□□□ 0.85
LINC00339-205ENST00000452322 FGD5Q6ZNL6 1462 aa20.38■□□□□ 0.85
LINC00339-205ENST00000452322 IFT140Q96RY7 1462 aa20.34■□□□□ 0.85
LINC00339-205ENST00000452322 TARBP1Q13395 1621 aaKnown RBP20.3■□□□□ 0.84
LINC00339-205ENST00000452322 SOGA1O94964 1423 aa20.29■□□□□ 0.84
LINC00339-205ENST00000452322 RAD54L2Q9Y4B4 1467 aa20.28■□□□□ 0.84
LINC00339-205ENST00000452322 ABCA10Q8WWZ4 1543 aa20.22■□□□□ 0.83
LINC00339-205ENST00000452322 WDR97A6NE52 1622 aa20.22■□□□□ 0.83
LINC00339-205ENST00000452322 ZNF608Q9ULD9 1512 aaPredicted RBP20.2■□□□□ 0.82
LINC00339-205ENST00000452322 TRIM41Q8WV44 630 aa20.19■□□□□ 0.82
LINC00339-205ENST00000452322 EIF4G3O43432 1585 aaKnown RBP20.16■□□□□ 0.82
LINC00339-205ENST00000452322 CHIC1Q5VXU3 224 aa20.14■□□□□ 0.81
LINC00339-205ENST00000452322 TDRD9Q8NDG6 1382 aaKnown RBP20.13■□□□□ 0.81
LINC00339-205ENST00000452322 AQRO60306 1485 aaKnown RBP eCLIP20.12■□□□□ 0.81
LINC00339-205ENST00000452322 ABCA5Q8WWZ7 1642 aa20.11■□□□□ 0.81
LINC00339-205ENST00000452322 GAPVD1Q14C86 1478 aa20.08■□□□□ 0.8
LINC00339-205ENST00000452322 GRIN2BQ13224 1484 aa20.04■□□□□ 0.8
LINC00339-205ENST00000452322 KIF27Q86VH2 1401 aa20.04■□□□□ 0.8
LINC00339-205ENST00000452322 PBRM1Q86U86 1689 aa20.02■□□□□ 0.8
LINC00339-205ENST00000452322 ERICH3Q5RHP9 1530 aa19.99■□□□□ 0.79
LINC00339-205ENST00000452322 SNAPC4Q5SXM2 1469 aa19.97■□□□□ 0.79
LINC00339-205ENST00000452322 MAGI1Q96QZ7 1491 aaPredicted RBP19.97■□□□□ 0.79
LINC00339-205ENST00000452322 RUSC2Q8N2Y8 1516 aa19.92■□□□□ 0.78
LINC00339-205ENST00000452322 ADAMTS12P58397 1594 aa19.9■□□□□ 0.78
LINC00339-205ENST00000452322 IGF1RP08069 1367 aa19.9■□□□□ 0.78
LINC00339-205ENST00000452322 EEA1Q15075 1411 aa19.88■□□□□ 0.77
LINC00339-205ENST00000452322 SYNJ2O15056 1496 aa19.88■□□□□ 0.77
LINC00339-205ENST00000452322 CUL7Q14999 1698 aa19.87■□□□□ 0.77
LINC00339-205ENST00000452322 FHAD1B1AJZ9 1412 aa19.86■□□□□ 0.77
LINC00339-205ENST00000452322 CHD1O14646 1710 aa19.83■□□□□ 0.77
LINC00339-205ENST00000452322 CHMP7Q8WUX9 453 aaPredicted RBP19.81■□□□□ 0.76
LINC00339-205ENST00000452322 FBLN2P98095 1184 aa19.8■□□□□ 0.76
LINC00339-205ENST00000452322 CARMIL1Q5VZK9 1371 aa19.79■□□□□ 0.76
LINC00339-205ENST00000452322 GRIN2AQ12879 1464 aa19.78■□□□□ 0.76
LINC00339-205ENST00000452322 CSRNP3Q8WYN3 585 aa19.77■□□□□ 0.76
LINC00339-205ENST00000452322 PRXQ9BXM0 1461 aa19.74■□□□□ 0.75
LINC00339-205ENST00000452322 RAPGEF2Q9Y4G8 1499 aa19.73■□□□□ 0.75
LINC00339-205ENST00000452322 OSCARQ8IYS5 282 aa19.72■□□□□ 0.75
LINC00339-205ENST00000452322 FAM9AQ8IZU1 332 aaPredicted RBP19.72■□□□□ 0.75
LINC00339-205ENST00000452322 NUP160Q12769 1436 aa19.69■□□□□ 0.74
LINC00339-205ENST00000452322 CEP170Q5SW79 1584 aa19.67■□□□□ 0.74
LINC00339-205ENST00000452322 CLASP1Q7Z460 1538 aa19.65■□□□□ 0.74
LINC00339-205ENST00000452322 KIF21BO75037 1637 aa19.64■□□□□ 0.74
LINC00339-205ENST00000452322 KIAA0586Q9BVV6 1533 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms