RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 NISCHQ9Y2I1 1504 aa31.14■■■□□ 2.58
VPS33A-202ENST00000451053 CCDC180Q9P1Z9 1646 aa27.54■■■□□ 2
VPS33A-202ENST00000451053 ABCC9O60706 1549 aa26.67■■□□□ 1.86
VPS33A-202ENST00000451053 ZCCHC6Q5VYS8 1495 aaKnown RBP26.02■■□□□ 1.76
VPS33A-202ENST00000451053 DCAF8L2P0C7V8 631 aa25.88■■□□□ 1.73
VPS33A-202ENST00000451053 NACADO15069 1562 aa25.8■■□□□ 1.72
VPS33A-202ENST00000451053 RB1CC1Q8TDY2 1594 aa25.76■■□□□ 1.71
VPS33A-202ENST00000451053 DCAF1Q9Y4B6 1507 aa25.75■■□□□ 1.71
VPS33A-202ENST00000451053 MYO15BQ96JP2 1530 aa25.74■■□□□ 1.71
VPS33A-202ENST00000451053 UNC13AQ9UPW8 1703 aa25.22■■□□□ 1.63
VPS33A-202ENST00000451053 SCRIBQ14160 1630 aa25.19■■□□□ 1.62
VPS33A-202ENST00000451053 BICRAQ9NZM4 1560 aa25.01■■□□□ 1.59
VPS33A-202ENST00000451053 PABPN1Q86U42 306 aaKnown RBP eCLIP24.98■■□□□ 1.59
VPS33A-202ENST00000451053 SHROOM4Q9ULL8 1493 aa24.83■■□□□ 1.57
VPS33A-202ENST00000451053 EIF4G1Q04637 1599 aaKnown RBP24.3■■□□□ 1.48
VPS33A-202ENST00000451053 CECR2Q9BXF3 1484 aa24.26■■□□□ 1.47
VPS33A-202ENST00000451053 DNAJC5BQ9UF47 199 aa24.2■■□□□ 1.46
VPS33A-202ENST00000451053 CC2D2AQ9P2K1 1620 aa24.13■■□□□ 1.45
VPS33A-202ENST00000451053 SMARCA4P51532 1647 aa24.11■■□□□ 1.45
VPS33A-202ENST00000451053 BAZ1AQ9NRL2 1556 aaPredicted RBP24.1■■□□□ 1.45
VPS33A-202ENST00000451053 MROH2BQ7Z745 1585 aa24.03■■□□□ 1.44
VPS33A-202ENST00000451053 ATAD2BQ9ULI0 1458 aa23.88■■□□□ 1.41
VPS33A-202ENST00000451053 SMARCA2P51531 1590 aa23.86■■□□□ 1.41
VPS33A-202ENST00000451053 RSF1Q96T23 1441 aaPredicted RBP23.85■■□□□ 1.41
VPS33A-202ENST00000451053 PEG3Q9GZU2 1588 aa23.85■■□□□ 1.41
VPS33A-202ENST00000451053 NCAPD3P42695 1498 aa23.81■■□□□ 1.4
VPS33A-202ENST00000451053 WIZO95785 1651 aa23.79■■□□□ 1.4
VPS33A-202ENST00000451053 HMGXB3Q12766 1538 aa23.74■■□□□ 1.39
VPS33A-202ENST00000451053 BAZ1BQ9UIG0 1483 aaKnown RBP23.71■■□□□ 1.39
VPS33A-202ENST00000451053 TOP2AP11388 1531 aaKnown RBP23.54■■□□□ 1.36
VPS33A-202ENST00000451053 SUPT5HO00267 1087 aaKnown RBP23.49■■□□□ 1.35
VPS33A-202ENST00000451053 CCDC88BA6NC98 1476 aa23.26■■□□□ 1.31
VPS33A-202ENST00000451053 NESP48681 1621 aa23.19■■□□□ 1.3
VPS33A-202ENST00000451053 CADPSQ9ULU8 1353 aa23.14■■□□□ 1.29
VPS33A-202ENST00000451053 LAMC3Q9Y6N6 1575 aa23.13■■□□□ 1.29
VPS33A-202ENST00000451053 CFTRP13569 1480 aa23.07■■□□□ 1.28
VPS33A-202ENST00000451053 PDS5BQ9NTI5 1447 aa22.95■■□□□ 1.26
VPS33A-202ENST00000451053 ERCC6Q03468 1493 aa22.94■■□□□ 1.26
VPS33A-202ENST00000451053 PRDM2Q13029 1718 aa22.93■■□□□ 1.26
VPS33A-202ENST00000451053 KIF21AQ7Z4S6 1674 aa22.92■■□□□ 1.26
VPS33A-202ENST00000451053 FANCD2Q9BXW9 1451 aa22.88■■□□□ 1.25
VPS33A-202ENST00000451053 CEP164Q9UPV0 1460 aa22.82■■□□□ 1.24
VPS33A-202ENST00000451053 THOC2Q8NI27 1593 aaKnown RBP22.76■■□□□ 1.23
VPS33A-202ENST00000451053 MRC2Q9UBG0 1479 aa22.73■■□□□ 1.23
VPS33A-202ENST00000451053 URB2Q14146 1524 aaKnown RBP22.66■■□□□ 1.22
VPS33A-202ENST00000451053 WDR62O43379 1518 aa22.64■■□□□ 1.21
VPS33A-202ENST00000451053 CUX2O14529 1486 aa22.57■■□□□ 1.2
VPS33A-202ENST00000451053 TOPBP1Q92547 1522 aa22.57■■□□□ 1.2
VPS33A-202ENST00000451053 DNMBPQ6XZF7 1577 aa22.56■■□□□ 1.2
VPS33A-202ENST00000451053 ABCC8Q09428 1581 aa22.55■■□□□ 1.2
VPS33A-202ENST00000451053 CUX1P39880 1505 aa22.52■■□□□ 1.2
VPS33A-202ENST00000451053 WRNQ14191 1432 aaPredicted RBP eCLIP22.48■■□□□ 1.19
VPS33A-202ENST00000451053 SYNJ1O43426 1573 aa22.43■■□□□ 1.18
VPS33A-202ENST00000451053 TOP2BQ02880 1626 aa22.39■■□□□ 1.18
VPS33A-202ENST00000451053 BIVM-ERCC5R4GMW8 1640 aa22.39■■□□□ 1.18
VPS33A-202ENST00000451053 POLA1P09884 1462 aaPredicted RBP22.39■■□□□ 1.17
VPS33A-202ENST00000451053 FGD5Q6ZNL6 1462 aa22.39■■□□□ 1.17
VPS33A-202ENST00000451053 IFT140Q96RY7 1462 aa22.33■■□□□ 1.16
VPS33A-202ENST00000451053 RAD54L2Q9Y4B4 1467 aa22.31■■□□□ 1.16
VPS33A-202ENST00000451053 TARBP1Q13395 1621 aaKnown RBP22.29■■□□□ 1.16
VPS33A-202ENST00000451053 SOGA1O94964 1423 aa22.29■■□□□ 1.16
VPS33A-202ENST00000451053 ZNF608Q9ULD9 1512 aaPredicted RBP22.23■■□□□ 1.15
VPS33A-202ENST00000451053 WDR97A6NE52 1622 aa22.2■■□□□ 1.14
VPS33A-202ENST00000451053 ABCA10Q8WWZ4 1543 aa22.17■■□□□ 1.14
VPS33A-202ENST00000451053 EIF4G3O43432 1585 aaKnown RBP22.15■■□□□ 1.14
VPS33A-202ENST00000451053 TDRD9Q8NDG6 1382 aaKnown RBP22.14■■□□□ 1.14
VPS33A-202ENST00000451053 TRIM41Q8WV44 630 aa22.14■■□□□ 1.13
VPS33A-202ENST00000451053 AQRO60306 1485 aaKnown RBP eCLIP22.14■■□□□ 1.13
VPS33A-202ENST00000451053 CHIC1Q5VXU3 224 aa22.11■■□□□ 1.13
VPS33A-202ENST00000451053 ABCA5Q8WWZ7 1642 aa22.07■■□□□ 1.12
VPS33A-202ENST00000451053 GAPVD1Q14C86 1478 aa22.04■■□□□ 1.12
VPS33A-202ENST00000451053 PBRM1Q86U86 1689 aa21.99■■□□□ 1.11
VPS33A-202ENST00000451053 GRIN2BQ13224 1484 aa21.99■■□□□ 1.11
VPS33A-202ENST00000451053 KIF27Q86VH2 1401 aa21.97■■□□□ 1.11
VPS33A-202ENST00000451053 SNAPC4Q5SXM2 1469 aa21.95■■□□□ 1.1
VPS33A-202ENST00000451053 RUSC2Q8N2Y8 1516 aa21.91■■□□□ 1.1
VPS33A-202ENST00000451053 ERICH3Q5RHP9 1530 aa21.9■■□□□ 1.1
VPS33A-202ENST00000451053 MAGI1Q96QZ7 1491 aaPredicted RBP21.9■■□□□ 1.1
VPS33A-202ENST00000451053 IGF1RP08069 1367 aa21.85■■□□□ 1.09
VPS33A-202ENST00000451053 ADAMTS12P58397 1594 aa21.84■■□□□ 1.09
VPS33A-202ENST00000451053 SYNJ2O15056 1496 aa21.82■■□□□ 1.08
VPS33A-202ENST00000451053 CHD1O14646 1710 aa21.81■■□□□ 1.08
VPS33A-202ENST00000451053 FHAD1B1AJZ9 1412 aa21.8■■□□□ 1.08
VPS33A-202ENST00000451053 FBLN2P98095 1184 aa21.79■■□□□ 1.08
VPS33A-202ENST00000451053 CUL7Q14999 1698 aa21.77■■□□□ 1.08
VPS33A-202ENST00000451053 CHMP7Q8WUX9 453 aaPredicted RBP21.76■■□□□ 1.07
VPS33A-202ENST00000451053 EEA1Q15075 1411 aa21.74■■□□□ 1.07
VPS33A-202ENST00000451053 CARMIL1Q5VZK9 1371 aa21.73■■□□□ 1.07
VPS33A-202ENST00000451053 FAM9AQ8IZU1 332 aaPredicted RBP21.72■■□□□ 1.07
VPS33A-202ENST00000451053 GRIN2AQ12879 1464 aa21.71■■□□□ 1.07
VPS33A-202ENST00000451053 OSCARQ8IYS5 282 aa21.68■■□□□ 1.06
VPS33A-202ENST00000451053 CSRNP3Q8WYN3 585 aa21.68■■□□□ 1.06
VPS33A-202ENST00000451053 PRXQ9BXM0 1461 aa21.64■■□□□ 1.06
VPS33A-202ENST00000451053 RAPGEF2Q9Y4G8 1499 aa21.63■■□□□ 1.05
VPS33A-202ENST00000451053 CEP170Q5SW79 1584 aa21.62■■□□□ 1.05
VPS33A-202ENST00000451053 NUP160Q12769 1436 aa21.61■■□□□ 1.05
VPS33A-202ENST00000451053 CLASP1Q7Z460 1538 aa21.58■■□□□ 1.04
VPS33A-202ENST00000451053 KIF21BO75037 1637 aa21.52■■□□□ 1.04
VPS33A-202ENST00000451053 DNAJC5Q9H3Z4 198 aa21.5■■□□□ 1.03
VPS33A-202ENST00000451053 KIAA0586Q9BVV6 1533 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms