RNA–Protein interactions for RNA: ENST00000449575.6

CCDC171-203, Transcript of coiled-coil domain containing 171, humanhuman

TSL 2

Gene CCDC171, Length 2,628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-203ENST00000449575 NISCHQ9Y2I1 1504 aa23.5■■□□□ 1.35
CCDC171-203ENST00000449575 CCDC180Q9P1Z9 1646 aa20.76■□□□□ 0.91
CCDC171-203ENST00000449575 ABCC9O60706 1549 aa20.19■□□□□ 0.82
CCDC171-203ENST00000449575 ZCCHC6Q5VYS8 1495 aaKnown RBP19.62■□□□□ 0.73
CCDC171-203ENST00000449575 DCAF8L2P0C7V8 631 aa19.61■□□□□ 0.73
CCDC171-203ENST00000449575 NACADO15069 1562 aa19.44■□□□□ 0.7
CCDC171-203ENST00000449575 RB1CC1Q8TDY2 1594 aa19.42■□□□□ 0.7
CCDC171-203ENST00000449575 DCAF1Q9Y4B6 1507 aa19.38■□□□□ 0.69
CCDC171-203ENST00000449575 MYO15BQ96JP2 1530 aa19.35■□□□□ 0.69
CCDC171-203ENST00000449575 UNC13AQ9UPW8 1703 aa19.16■□□□□ 0.66
CCDC171-203ENST00000449575 SCRIBQ14160 1630 aa19.06■□□□□ 0.64
CCDC171-203ENST00000449575 BICRAQ9NZM4 1560 aa18.92■□□□□ 0.62
CCDC171-203ENST00000449575 PABPN1Q86U42 306 aaKnown RBP eCLIP18.92■□□□□ 0.62
CCDC171-203ENST00000449575 SHROOM4Q9ULL8 1493 aa18.82■□□□□ 0.6
CCDC171-203ENST00000449575 DNAJC5BQ9UF47 199 aa18.38■□□□□ 0.53
CCDC171-203ENST00000449575 EIF4G1Q04637 1599 aaKnown RBP18.37■□□□□ 0.53
CCDC171-203ENST00000449575 CECR2Q9BXF3 1484 aa18.36■□□□□ 0.53
CCDC171-203ENST00000449575 CC2D2AQ9P2K1 1620 aa18.26■□□□□ 0.51
CCDC171-203ENST00000449575 SMARCA4P51532 1647 aa18.21■□□□□ 0.51
CCDC171-203ENST00000449575 MROH2BQ7Z745 1585 aa18.17■□□□□ 0.5
CCDC171-203ENST00000449575 BAZ1AQ9NRL2 1556 aaPredicted RBP18.17■□□□□ 0.5
CCDC171-203ENST00000449575 ATAD2BQ9ULI0 1458 aa18.03■□□□□ 0.48
CCDC171-203ENST00000449575 WIZO95785 1651 aa18.02■□□□□ 0.48
CCDC171-203ENST00000449575 RSF1Q96T23 1441 aaPredicted RBP18.01■□□□□ 0.47
CCDC171-203ENST00000449575 PEG3Q9GZU2 1588 aa17.98■□□□□ 0.47
CCDC171-203ENST00000449575 SMARCA2P51531 1590 aa17.97■□□□□ 0.47
CCDC171-203ENST00000449575 NCAPD3P42695 1498 aa17.95■□□□□ 0.46
CCDC171-203ENST00000449575 BAZ1BQ9UIG0 1483 aaKnown RBP17.88■□□□□ 0.45
CCDC171-203ENST00000449575 HMGXB3Q12766 1538 aa17.88■□□□□ 0.45
CCDC171-203ENST00000449575 SUPT5HO00267 1087 aaKnown RBP17.78■□□□□ 0.44
CCDC171-203ENST00000449575 TOP2AP11388 1531 aaKnown RBP17.75■□□□□ 0.43
CCDC171-203ENST00000449575 CCDC88BA6NC98 1476 aa17.58■□□□□ 0.4
CCDC171-203ENST00000449575 NESP48681 1621 aa17.57■□□□□ 0.4
CCDC171-203ENST00000449575 LAMC3Q9Y6N6 1575 aa17.45■□□□□ 0.38
CCDC171-203ENST00000449575 CADPSQ9ULU8 1353 aa17.44■□□□□ 0.38
CCDC171-203ENST00000449575 CFTRP13569 1480 aa17.4■□□□□ 0.38
CCDC171-203ENST00000449575 KIF21AQ7Z4S6 1674 aa17.38■□□□□ 0.37
CCDC171-203ENST00000449575 PRDM2Q13029 1718 aa17.35■□□□□ 0.37
CCDC171-203ENST00000449575 ERCC6Q03468 1493 aa17.31■□□□□ 0.36
CCDC171-203ENST00000449575 PDS5BQ9NTI5 1447 aa17.29■□□□□ 0.36
CCDC171-203ENST00000449575 FANCD2Q9BXW9 1451 aa17.27■□□□□ 0.36
CCDC171-203ENST00000449575 THOC2Q8NI27 1593 aaKnown RBP17.21■□□□□ 0.35
CCDC171-203ENST00000449575 CEP164Q9UPV0 1460 aa17.21■□□□□ 0.35
CCDC171-203ENST00000449575 MRC2Q9UBG0 1479 aa17.13■□□□□ 0.33
CCDC171-203ENST00000449575 URB2Q14146 1524 aaKnown RBP17.12■□□□□ 0.33
CCDC171-203ENST00000449575 WDR62O43379 1518 aa17.08■□□□□ 0.33
CCDC171-203ENST00000449575 ABCC8Q09428 1581 aa17.07■□□□□ 0.32
CCDC171-203ENST00000449575 TOPBP1Q92547 1522 aa17.04■□□□□ 0.32
CCDC171-203ENST00000449575 CUX1P39880 1505 aa17.02■□□□□ 0.32
CCDC171-203ENST00000449575 DNMBPQ6XZF7 1577 aa17.01■□□□□ 0.31
CCDC171-203ENST00000449575 CUX2O14529 1486 aa17■□□□□ 0.31
CCDC171-203ENST00000449575 SYNJ1O43426 1573 aa16.97■□□□□ 0.31
CCDC171-203ENST00000449575 WRNQ14191 1432 aaPredicted RBP eCLIP16.95■□□□□ 0.3
CCDC171-203ENST00000449575 POLA1P09884 1462 aaPredicted RBP16.91■□□□□ 0.3
CCDC171-203ENST00000449575 BIVM-ERCC5R4GMW8 1640 aa16.91■□□□□ 0.3
CCDC171-203ENST00000449575 FGD5Q6ZNL6 1462 aa16.91■□□□□ 0.3
CCDC171-203ENST00000449575 TOP2BQ02880 1626 aa16.9■□□□□ 0.3
CCDC171-203ENST00000449575 RAD54L2Q9Y4B4 1467 aa16.88■□□□□ 0.29
CCDC171-203ENST00000449575 TARBP1Q13395 1621 aaKnown RBP16.86■□□□□ 0.29
CCDC171-203ENST00000449575 ZNF608Q9ULD9 1512 aaPredicted RBP16.83■□□□□ 0.28
CCDC171-203ENST00000449575 SOGA1O94964 1423 aa16.82■□□□□ 0.28
CCDC171-203ENST00000449575 IFT140Q96RY7 1462 aa16.82■□□□□ 0.28
CCDC171-203ENST00000449575 WDR97A6NE52 1622 aa16.79■□□□□ 0.28
CCDC171-203ENST00000449575 EIF4G3O43432 1585 aaKnown RBP16.75■□□□□ 0.27
CCDC171-203ENST00000449575 TDRD9Q8NDG6 1382 aaKnown RBP16.75■□□□□ 0.27
CCDC171-203ENST00000449575 AQRO60306 1485 aaKnown RBP eCLIP16.74■□□□□ 0.27
CCDC171-203ENST00000449575 ABCA10Q8WWZ4 1543 aa16.71■□□□□ 0.27
CCDC171-203ENST00000449575 TRIM41Q8WV44 630 aa16.71■□□□□ 0.27
CCDC171-203ENST00000449575 CHIC1Q5VXU3 224 aa16.7■□□□□ 0.26
CCDC171-203ENST00000449575 ABCA5Q8WWZ7 1642 aa16.67■□□□□ 0.26
CCDC171-203ENST00000449575 PBRM1Q86U86 1689 aa16.64■□□□□ 0.26
CCDC171-203ENST00000449575 GAPVD1Q14C86 1478 aa16.63■□□□□ 0.25
CCDC171-203ENST00000449575 RUSC2Q8N2Y8 1516 aa16.61■□□□□ 0.25
CCDC171-203ENST00000449575 GRIN2BQ13224 1484 aa16.57■□□□□ 0.24
CCDC171-203ENST00000449575 SNAPC4Q5SXM2 1469 aa16.57■□□□□ 0.24
CCDC171-203ENST00000449575 KIF27Q86VH2 1401 aa16.54■□□□□ 0.24
CCDC171-203ENST00000449575 CHD1O14646 1710 aa16.54■□□□□ 0.24
CCDC171-203ENST00000449575 ERICH3Q5RHP9 1530 aa16.5■□□□□ 0.23
CCDC171-203ENST00000449575 IGF1RP08069 1367 aa16.49■□□□□ 0.23
CCDC171-203ENST00000449575 MAGI1Q96QZ7 1491 aaPredicted RBP16.49■□□□□ 0.23
CCDC171-203ENST00000449575 ADAMTS12P58397 1594 aa16.49■□□□□ 0.23
CCDC171-203ENST00000449575 FBLN2P98095 1184 aa16.49■□□□□ 0.23
CCDC171-203ENST00000449575 FAM9AQ8IZU1 332 aaPredicted RBP16.46■□□□□ 0.22
CCDC171-203ENST00000449575 SYNJ2O15056 1496 aa16.45■□□□□ 0.22
CCDC171-203ENST00000449575 CHMP7Q8WUX9 453 aaPredicted RBP16.42■□□□□ 0.22
CCDC171-203ENST00000449575 FHAD1B1AJZ9 1412 aa16.41■□□□□ 0.22
CCDC171-203ENST00000449575 CUL7Q14999 1698 aa16.41■□□□□ 0.22
CCDC171-203ENST00000449575 GRIN2AQ12879 1464 aa16.39■□□□□ 0.21
CCDC171-203ENST00000449575 CARMIL1Q5VZK9 1371 aa16.39■□□□□ 0.21
CCDC171-203ENST00000449575 OSCARQ8IYS5 282 aa16.36■□□□□ 0.21
CCDC171-203ENST00000449575 CSRNP3Q8WYN3 585 aa16.35■□□□□ 0.21
CCDC171-203ENST00000449575 CEP170Q5SW79 1584 aa16.35■□□□□ 0.21
CCDC171-203ENST00000449575 EEA1Q15075 1411 aa16.32■□□□□ 0.2
CCDC171-203ENST00000449575 PRXQ9BXM0 1461 aa16.32■□□□□ 0.2
CCDC171-203ENST00000449575 RAPGEF2Q9Y4G8 1499 aa16.3■□□□□ 0.2
CCDC171-203ENST00000449575 NUP160Q12769 1436 aa16.29■□□□□ 0.2
CCDC171-203ENST00000449575 EHMT2Q96KQ7 1210 aa16.29■□□□□ 0.2
CCDC171-203ENST00000449575 CLASP1Q7Z460 1538 aa16.29■□□□□ 0.2
CCDC171-203ENST00000449575 DNAJC5Q9H3Z4 198 aa16.26■□□□□ 0.19
CCDC171-203ENST00000449575 KIF21BO75037 1637 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms