RNA–Protein interactions for RNA: ENST00000439445.5

CCDC66-207, Transcript of coiled-coil domain containing 66, humanhuman

TSL 3

Gene CCDC66, Length 709 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66-207ENST00000439445 AEBP2Q6ZN18 517 aaPredicted RBP27.12■■□□□ 1.93
CCDC66-207ENST00000439445 CHIC1Q5VXU3 224 aa26.1■■□□□ 1.77
CCDC66-207ENST00000439445 NISCHQ9Y2I1 1504 aa24.63■■□□□ 1.53
CCDC66-207ENST00000439445 SENP3Q9H4L4 574 aaPredicted RBP23.16■■□□□ 1.3
CCDC66-207ENST00000439445 PHF23Q9BUL5 403 aaPredicted RBP22.86■■□□□ 1.25
CCDC66-207ENST00000439445 ABCC9O60706 1549 aa22.27■■□□□ 1.16
CCDC66-207ENST00000439445 CCDC180Q9P1Z9 1646 aa22.11■■□□□ 1.13
CCDC66-207ENST00000439445 FOXD1Q16676 465 aa21.49■■□□□ 1.03
CCDC66-207ENST00000439445 RB1CC1Q8TDY2 1594 aa21.13■□□□□ 0.97
CCDC66-207ENST00000439445 PLPPR3Q6T4P5 718 aa21.02■□□□□ 0.96
CCDC66-207ENST00000439445 DNAJC5BQ9UF47 199 aa21.01■□□□□ 0.95
CCDC66-207ENST00000439445 DCAF8L2P0C7V8 631 aa20.98■□□□□ 0.95
CCDC66-207ENST00000439445 NACADO15069 1562 aa20.95■□□□□ 0.94
CCDC66-207ENST00000439445 PABPN1Q86U42 306 aaKnown RBP eCLIP20.76■□□□□ 0.91
CCDC66-207ENST00000439445 UNC13AQ9UPW8 1703 aa20.64■□□□□ 0.89
CCDC66-207ENST00000439445 MYO15BQ96JP2 1530 aa20.6■□□□□ 0.89
CCDC66-207ENST00000439445 BICRAQ9NZM4 1560 aa20.5■□□□□ 0.87
CCDC66-207ENST00000439445 ZCCHC6Q5VYS8 1495 aaKnown RBP20.37■□□□□ 0.85
CCDC66-207ENST00000439445 PPP6R1Q9UPN7 881 aa20.31■□□□□ 0.84
CCDC66-207ENST00000439445 DCAF1Q9Y4B6 1507 aa20.31■□□□□ 0.84
CCDC66-207ENST00000439445 ADRA2BP18089 450 aa20.28■□□□□ 0.84
CCDC66-207ENST00000439445 PIAS4Q8N2W9 510 aaPredicted RBP20.21■□□□□ 0.83
CCDC66-207ENST00000439445 SHROOM4Q9ULL8 1493 aa20.18■□□□□ 0.82
CCDC66-207ENST00000439445 SCRIBQ14160 1630 aa20.18■□□□□ 0.82
CCDC66-207ENST00000439445 CC2D2AQ9P2K1 1620 aa20.09■□□□□ 0.81
CCDC66-207ENST00000439445 CECR2Q9BXF3 1484 aa20.06■□□□□ 0.8
CCDC66-207ENST00000439445 MSH5O43196 834 aa20.06■□□□□ 0.8
CCDC66-207ENST00000439445 EIF4G1Q04637 1599 aaKnown RBP20.01■□□□□ 0.79
CCDC66-207ENST00000439445 DNAJC5Q9H3Z4 198 aa19.36■□□□□ 0.69
CCDC66-207ENST00000439445 NCAPD3P42695 1498 aa19.35■□□□□ 0.69
CCDC66-207ENST00000439445 ATAD2BQ9ULI0 1458 aa19.28■□□□□ 0.68
CCDC66-207ENST00000439445 ERCC6Q03468 1493 aa19.24■□□□□ 0.67
CCDC66-207ENST00000439445 SMARCA2P51531 1590 aa19.23■□□□□ 0.67
CCDC66-207ENST00000439445 SMARCA4P51532 1647 aa19.22■□□□□ 0.67
CCDC66-207ENST00000439445 CUX2O14529 1486 aa19.2■□□□□ 0.66
CCDC66-207ENST00000439445 HMGXB3Q12766 1538 aa19.17■□□□□ 0.66
CCDC66-207ENST00000439445 BAZ1AQ9NRL2 1556 aaPredicted RBP19.12■□□□□ 0.65
CCDC66-207ENST00000439445 BAZ1BQ9UIG0 1483 aaKnown RBP19.1■□□□□ 0.65
CCDC66-207ENST00000439445 NESP48681 1621 aa19.1■□□□□ 0.65
CCDC66-207ENST00000439445 PEG3Q9GZU2 1588 aa19.02■□□□□ 0.63
CCDC66-207ENST00000439445 POTEDQ86YR6 584 aa19■□□□□ 0.63
CCDC66-207ENST00000439445 MROH2BQ7Z745 1585 aa18.99■□□□□ 0.63
CCDC66-207ENST00000439445 LAMC3Q9Y6N6 1575 aa18.93■□□□□ 0.62
CCDC66-207ENST00000439445 THOC2Q8NI27 1593 aaKnown RBP18.87■□□□□ 0.61
CCDC66-207ENST00000439445 PDS5BQ9NTI5 1447 aa18.85■□□□□ 0.61
CCDC66-207ENST00000439445 KIF21AQ7Z4S6 1674 aa18.82■□□□□ 0.6
CCDC66-207ENST00000439445 CADPSQ9ULU8 1353 aa18.78■□□□□ 0.6
CCDC66-207ENST00000439445 WIZO95785 1651 aa18.76■□□□□ 0.59
CCDC66-207ENST00000439445 MRC2Q9UBG0 1479 aa18.67■□□□□ 0.58
CCDC66-207ENST00000439445 SCAF1Q9H7N4 1312 aaKnown RBP18.63■□□□□ 0.57
CCDC66-207ENST00000439445 WDR62O43379 1518 aa18.6■□□□□ 0.57
CCDC66-207ENST00000439445 CEP164Q9UPV0 1460 aa18.58■□□□□ 0.57
CCDC66-207ENST00000439445 RSF1Q96T23 1441 aaPredicted RBP18.57■□□□□ 0.56
CCDC66-207ENST00000439445 FANCD2Q9BXW9 1451 aa18.56■□□□□ 0.56
CCDC66-207ENST00000439445 CFTRP13569 1480 aa18.52■□□□□ 0.56
CCDC66-207ENST00000439445 MAPK8IP2Q13387 824 aaPredicted RBP18.51■□□□□ 0.55
CCDC66-207ENST00000439445 TRIM41Q8WV44 630 aa18.51■□□□□ 0.55
CCDC66-207ENST00000439445 TOP2AP11388 1531 aaKnown RBP18.49■□□□□ 0.55
CCDC66-207ENST00000439445 PPP4R3CPQ6ZMV5 832 aa18.44■□□□□ 0.54
CCDC66-207ENST00000439445 URB2Q14146 1524 aaKnown RBP18.4■□□□□ 0.54
CCDC66-207ENST00000439445 DMRT2Q9Y5R5 561 aa18.4■□□□□ 0.54
CCDC66-207ENST00000439445 OSCARQ8IYS5 282 aa18.39■□□□□ 0.53
CCDC66-207ENST00000439445 CCDC88BA6NC98 1476 aa18.32■□□□□ 0.52
CCDC66-207ENST00000439445 PRDM2Q13029 1718 aa18.3■□□□□ 0.52
CCDC66-207ENST00000439445 IFT140Q96RY7 1462 aa18.21■□□□□ 0.51
CCDC66-207ENST00000439445 ZNF608Q9ULD9 1512 aaPredicted RBP18.2■□□□□ 0.5
CCDC66-207ENST00000439445 TOPBP1Q92547 1522 aa18.19■□□□□ 0.5
CCDC66-207ENST00000439445 ABCC8Q09428 1581 aa18.16■□□□□ 0.5
CCDC66-207ENST00000439445 DNMBPQ6XZF7 1577 aa18.1■□□□□ 0.49
CCDC66-207ENST00000439445 RIMBP3CA6NJZ7 1639 aa18.09■□□□□ 0.49
CCDC66-207ENST00000439445 RIMBP3BA6NNM3 1639 aa18.09■□□□□ 0.49
CCDC66-207ENST00000439445 RIMBP3Q9UFD9 1639 aa18.09■□□□□ 0.49
CCDC66-207ENST00000439445 EIF4G3O43432 1585 aaKnown RBP18.07■□□□□ 0.48
CCDC66-207ENST00000439445 AQRO60306 1485 aaKnown RBP eCLIP18.06■□□□□ 0.48
CCDC66-207ENST00000439445 CNKSR2Q8WXI2 1034 aa18.05■□□□□ 0.48
CCDC66-207ENST00000439445 TARBP1Q13395 1621 aaKnown RBP18.02■□□□□ 0.48
CCDC66-207ENST00000439445 FBLN2P98095 1184 aa18.02■□□□□ 0.48
CCDC66-207ENST00000439445 ARHGEF11O15085 1522 aa18.02■□□□□ 0.47
CCDC66-207ENST00000439445 POLA1P09884 1462 aaPredicted RBP18■□□□□ 0.47
CCDC66-207ENST00000439445 CYB5RLQ6IPT4 315 aa17.98■□□□□ 0.47
CCDC66-207ENST00000439445 CHD1O14646 1710 aa17.97■□□□□ 0.47
CCDC66-207ENST00000439445 SOGA1O94964 1423 aa17.96■□□□□ 0.47
CCDC66-207ENST00000439445 RAD54L2Q9Y4B4 1467 aa17.95■□□□□ 0.46
CCDC66-207ENST00000439445 TDRD9Q8NDG6 1382 aaKnown RBP17.93■□□□□ 0.46
CCDC66-207ENST00000439445 NCBP3Q53F19 620 aaKnown RBP17.88■□□□□ 0.45
CCDC66-207ENST00000439445 FGD5Q6ZNL6 1462 aa17.88■□□□□ 0.45
CCDC66-207ENST00000439445 CHMP7Q8WUX9 453 aaPredicted RBP17.85■□□□□ 0.45
CCDC66-207ENST00000439445 HOXD11P31277 338 aaPredicted RBP17.84■□□□□ 0.45
CCDC66-207ENST00000439445 CUX1P39880 1505 aa17.83■□□□□ 0.45
CCDC66-207ENST00000439445 SNAPC4Q5SXM2 1469 aa17.83■□□□□ 0.45
CCDC66-207ENST00000439445 ARAP1Q96P48 1450 aa17.83■□□□□ 0.45
CCDC66-207ENST00000439445 TRHP20396 242 aaPredicted RBP17.83■□□□□ 0.44
CCDC66-207ENST00000439445 WDR97A6NE52 1622 aa17.8■□□□□ 0.44
CCDC66-207ENST00000439445 RNF216Q9NWF9 866 aaPredicted RBP17.8■□□□□ 0.44
CCDC66-207ENST00000439445 GRIN2BQ13224 1484 aa17.78■□□□□ 0.44
CCDC66-207ENST00000439445 MAGI1Q96QZ7 1491 aaPredicted RBP17.78■□□□□ 0.44
CCDC66-207ENST00000439445 SUPT5HO00267 1087 aaKnown RBP17.77■□□□□ 0.44
CCDC66-207ENST00000439445 SYNJ1O43426 1573 aa17.74■□□□□ 0.43
CCDC66-207ENST00000439445 CLASP1Q7Z460 1538 aa17.74■□□□□ 0.43
CCDC66-207ENST00000439445 SYNJ2O15056 1496 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms