RNA–Protein interactions for RNA: ENST00000428843.5

PTPN18-205, Transcript of protein tyrosine phosphatase, non-receptor type 18, humanhuman

TSL 3

Gene PTPN18, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN18-205ENST00000428843 NISCHQ9Y2I1 1504 aa53.59■■■■■ 6.17
PTPN18-205ENST00000428843 CCDC180Q9P1Z9 1646 aa47.48■■■■■ 5.19
PTPN18-205ENST00000428843 ABCC9O60706 1549 aa46.11■■■■■ 4.97
PTPN18-205ENST00000428843 ZCCHC6Q5VYS8 1495 aaKnown RBP44.72■■■■■ 4.75
PTPN18-205ENST00000428843 DCAF8L2P0C7V8 631 aa44.62■■■■■ 4.73
PTPN18-205ENST00000428843 NACADO15069 1562 aa44.54■■■■■ 4.72
PTPN18-205ENST00000428843 RB1CC1Q8TDY2 1594 aa44.51■■■■■ 4.72
PTPN18-205ENST00000428843 MYO15BQ96JP2 1530 aa44.38■■■■■ 4.69
PTPN18-205ENST00000428843 DCAF1Q9Y4B6 1507 aa44.34■■■■■ 4.69
PTPN18-205ENST00000428843 UNC13AQ9UPW8 1703 aa43.57■■■■■ 4.57
PTPN18-205ENST00000428843 SCRIBQ14160 1630 aa43.39■■■■■ 4.54
PTPN18-205ENST00000428843 BICRAQ9NZM4 1560 aa43.17■■■■■ 4.5
PTPN18-205ENST00000428843 PABPN1Q86U42 306 aaKnown RBP eCLIP43.15■■■■■ 4.5
PTPN18-205ENST00000428843 SHROOM4Q9ULL8 1493 aa42.68■■■■■ 4.42
PTPN18-205ENST00000428843 EIF4G1Q04637 1599 aaKnown RBP41.98■■■■■ 4.31
PTPN18-205ENST00000428843 DNAJC5BQ9UF47 199 aa41.97■■■■■ 4.31
PTPN18-205ENST00000428843 CC2D2AQ9P2K1 1620 aa41.73■■■■■ 4.27
PTPN18-205ENST00000428843 CECR2Q9BXF3 1484 aa41.72■■■■■ 4.27
PTPN18-205ENST00000428843 SMARCA4P51532 1647 aa41.52■■■■■ 4.24
PTPN18-205ENST00000428843 BAZ1AQ9NRL2 1556 aaPredicted RBP41.5■■■■■ 4.23
PTPN18-205ENST00000428843 MROH2BQ7Z745 1585 aa41.33■■■■■ 4.21
PTPN18-205ENST00000428843 ATAD2BQ9ULI0 1458 aa41.18■■■■■ 4.18
PTPN18-205ENST00000428843 SMARCA2P51531 1590 aa41.14■■■■■ 4.18
PTPN18-205ENST00000428843 PEG3Q9GZU2 1588 aa41.09■■■■■ 4.17
PTPN18-205ENST00000428843 NCAPD3P42695 1498 aa41.08■■■■■ 4.17
PTPN18-205ENST00000428843 RSF1Q96T23 1441 aaPredicted RBP40.98■■■■■ 4.15
PTPN18-205ENST00000428843 WIZO95785 1651 aa40.93■■■■■ 4.14
PTPN18-205ENST00000428843 HMGXB3Q12766 1538 aa40.93■■■■■ 4.14
PTPN18-205ENST00000428843 BAZ1BQ9UIG0 1483 aaKnown RBP40.86■■■■■ 4.13
PTPN18-205ENST00000428843 TOP2AP11388 1531 aaKnown RBP40.48■■■■■ 4.07
PTPN18-205ENST00000428843 SUPT5HO00267 1087 aaKnown RBP40.24■■■■■ 4.03
PTPN18-205ENST00000428843 NESP48681 1621 aa40.02■■■■■ 4
PTPN18-205ENST00000428843 CCDC88BA6NC98 1476 aa40■■■■□ 3.99
PTPN18-205ENST00000428843 LAMC3Q9Y6N6 1575 aa39.96■■■■□ 3.99
PTPN18-205ENST00000428843 CADPSQ9ULU8 1353 aa39.91■■■■□ 3.98
PTPN18-205ENST00000428843 CFTRP13569 1480 aa39.75■■■■□ 3.95
PTPN18-205ENST00000428843 ERCC6Q03468 1493 aa39.69■■■■□ 3.94
PTPN18-205ENST00000428843 PDS5BQ9NTI5 1447 aa39.65■■■■□ 3.94
PTPN18-205ENST00000428843 KIF21AQ7Z4S6 1674 aa39.58■■■■□ 3.93
PTPN18-205ENST00000428843 PRDM2Q13029 1718 aa39.55■■■■□ 3.92
PTPN18-205ENST00000428843 FANCD2Q9BXW9 1451 aa39.47■■■■□ 3.91
PTPN18-205ENST00000428843 CEP164Q9UPV0 1460 aa39.38■■■■□ 3.9
PTPN18-205ENST00000428843 THOC2Q8NI27 1593 aaKnown RBP39.33■■■■□ 3.89
PTPN18-205ENST00000428843 MRC2Q9UBG0 1479 aa39.24■■■■□ 3.87
PTPN18-205ENST00000428843 CUX2O14529 1486 aa39.12■■■■□ 3.85
PTPN18-205ENST00000428843 WDR62O43379 1518 aa39.1■■■■□ 3.85
PTPN18-205ENST00000428843 URB2Q14146 1524 aaKnown RBP39.07■■■■□ 3.84
PTPN18-205ENST00000428843 TOPBP1Q92547 1522 aa38.89■■■■□ 3.82
PTPN18-205ENST00000428843 ABCC8Q09428 1581 aa38.87■■■■□ 3.81
PTPN18-205ENST00000428843 DNMBPQ6XZF7 1577 aa38.87■■■■□ 3.81
PTPN18-205ENST00000428843 CUX1P39880 1505 aa38.75■■■■□ 3.79
PTPN18-205ENST00000428843 WRNQ14191 1432 aaPredicted RBP eCLIP38.62■■■■□ 3.77
PTPN18-205ENST00000428843 POLA1P09884 1462 aaPredicted RBP38.58■■■■□ 3.77
PTPN18-205ENST00000428843 FGD5Q6ZNL6 1462 aa38.55■■■■□ 3.76
PTPN18-205ENST00000428843 SYNJ1O43426 1573 aa38.53■■■■□ 3.76
PTPN18-205ENST00000428843 IFT140Q96RY7 1462 aa38.53■■■■□ 3.76
PTPN18-205ENST00000428843 BIVM-ERCC5R4GMW8 1640 aa38.52■■■■□ 3.76
PTPN18-205ENST00000428843 TOP2BQ02880 1626 aa38.51■■■■□ 3.76
PTPN18-205ENST00000428843 TARBP1Q13395 1621 aaKnown RBP38.45■■■■□ 3.75
PTPN18-205ENST00000428843 SOGA1O94964 1423 aa38.43■■■■□ 3.74
PTPN18-205ENST00000428843 RAD54L2Q9Y4B4 1467 aa38.42■■■■□ 3.74
PTPN18-205ENST00000428843 ZNF608Q9ULD9 1512 aaPredicted RBP38.35■■■■□ 3.73
PTPN18-205ENST00000428843 WDR97A6NE52 1622 aa38.23■■■■□ 3.71
PTPN18-205ENST00000428843 EIF4G3O43432 1585 aaKnown RBP38.23■■■■□ 3.71
PTPN18-205ENST00000428843 ABCA10Q8WWZ4 1543 aa38.18■■■■□ 3.7
PTPN18-205ENST00000428843 AQRO60306 1485 aaKnown RBP eCLIP38.17■■■■□ 3.72e-12■■■■■ 52
PTPN18-205ENST00000428843 TDRD9Q8NDG6 1382 aaKnown RBP38.17■■■■□ 3.7
PTPN18-205ENST00000428843 ABCA5Q8WWZ7 1642 aa38.02■■■■□ 3.68
PTPN18-205ENST00000428843 GAPVD1Q14C86 1478 aa37.98■■■■□ 3.67
PTPN18-205ENST00000428843 TRIM41Q8WV44 630 aa37.96■■■■□ 3.67
PTPN18-205ENST00000428843 PBRM1Q86U86 1689 aa37.93■■■■□ 3.66
PTPN18-205ENST00000428843 GRIN2BQ13224 1484 aa37.93■■■■□ 3.66
PTPN18-205ENST00000428843 SNAPC4Q5SXM2 1469 aa37.84■■■■□ 3.65
PTPN18-205ENST00000428843 MAGI1Q96QZ7 1491 aaPredicted RBP37.78■■■■□ 3.64
PTPN18-205ENST00000428843 CHIC1Q5VXU3 224 aa37.77■■■■□ 3.64
PTPN18-205ENST00000428843 KIF27Q86VH2 1401 aa37.77■■■■□ 3.64
PTPN18-205ENST00000428843 ERICH3Q5RHP9 1530 aa37.73■■■■□ 3.63
PTPN18-205ENST00000428843 CHD1O14646 1710 aa37.7■■■■□ 3.63
PTPN18-205ENST00000428843 SYNJ2O15056 1496 aa37.64■■■■□ 3.62
PTPN18-205ENST00000428843 FBLN2P98095 1184 aa37.63■■■■□ 3.61
PTPN18-205ENST00000428843 ADAMTS12P58397 1594 aa37.63■■■■□ 3.61
PTPN18-205ENST00000428843 RUSC2Q8N2Y8 1516 aa37.6■■■■□ 3.61
PTPN18-205ENST00000428843 IGF1RP08069 1367 aa37.58■■■■□ 3.61
PTPN18-205ENST00000428843 CHMP7Q8WUX9 453 aaPredicted RBP37.58■■■■□ 3.61
PTPN18-205ENST00000428843 OSCARQ8IYS5 282 aa37.57■■■■□ 3.6
PTPN18-205ENST00000428843 FHAD1B1AJZ9 1412 aa37.55■■■■□ 3.6
PTPN18-205ENST00000428843 CUL7Q14999 1698 aa37.48■■■■□ 3.59
PTPN18-205ENST00000428843 DNAJC5Q9H3Z4 198 aa37.47■■■■□ 3.59
PTPN18-205ENST00000428843 GRIN2AQ12879 1464 aa37.45■■■■□ 3.59
PTPN18-205ENST00000428843 CARMIL1Q5VZK9 1371 aa37.37■■■■□ 3.57
PTPN18-205ENST00000428843 EEA1Q15075 1411 aa37.3■■■■□ 3.56
PTPN18-205ENST00000428843 CEP170Q5SW79 1584 aa37.27■■■■□ 3.56
PTPN18-205ENST00000428843 CLASP1Q7Z460 1538 aa37.26■■■■□ 3.56
PTPN18-205ENST00000428843 NUP160Q12769 1436 aa37.26■■■■□ 3.55
PTPN18-205ENST00000428843 CSRNP3Q8WYN3 585 aa37.21■■■■□ 3.55
PTPN18-205ENST00000428843 FAM9AQ8IZU1 332 aaPredicted RBP37.2■■■■□ 3.55
PTPN18-205ENST00000428843 RAPGEF2Q9Y4G8 1499 aa37.2■■■■□ 3.54
PTPN18-205ENST00000428843 PRXQ9BXM0 1461 aa37.15■■■■□ 3.54
PTPN18-205ENST00000428843 ARHGEF11O15085 1522 aa36.99■■■■□ 3.51
PTPN18-205ENST00000428843 KIAA0586Q9BVV6 1533 aa36.99■■■■□ 3.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms