RNA–Protein interactions for RNA: ENST00000421234.5

LINC00475-204, long intergenic non-protein coding RNA 475, humanhuman

TSL 3

Gene LINC00475, Length 467 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00475-204ENST00000421234 AEBP2Q6ZN18 517 aaPredicted RBP36.6■■■■□ 3.45
LINC00475-204ENST00000421234 CHIC1Q5VXU3 224 aa34.23■■■■□ 3.07
LINC00475-204ENST00000421234 NISCHQ9Y2I1 1504 aa31.66■■■□□ 2.66
LINC00475-204ENST00000421234 SENP3Q9H4L4 574 aaPredicted RBP31.36■■■□□ 2.61
LINC00475-204ENST00000421234 PHF23Q9BUL5 403 aaPredicted RBP30.84■■■□□ 2.53
LINC00475-204ENST00000421234 FOXD1Q16676 465 aa29.3■■■□□ 2.28
LINC00475-204ENST00000421234 CCDC180Q9P1Z9 1646 aa28.34■■■□□ 2.13
LINC00475-204ENST00000421234 POTEDQ86YR6 584 aa28.28■■■□□ 2.12
LINC00475-204ENST00000421234 ABCC9O60706 1549 aa27.87■■■□□ 2.05
LINC00475-204ENST00000421234 MSH5O43196 834 aa27.72■■■□□ 2.03
LINC00475-204ENST00000421234 PIAS4Q8N2W9 510 aaPredicted RBP27.23■■□□□ 1.95
LINC00475-204ENST00000421234 PLPPR3Q6T4P5 718 aa26.91■■□□□ 1.9
LINC00475-204ENST00000421234 PPP6R1Q9UPN7 881 aa26.83■■□□□ 1.89
LINC00475-204ENST00000421234 RB1CC1Q8TDY2 1594 aa26.76■■□□□ 1.87
LINC00475-204ENST00000421234 ADRA2BP18089 450 aa26.72■■□□□ 1.87
LINC00475-204ENST00000421234 NACADO15069 1562 aa26.64■■□□□ 1.86
LINC00475-204ENST00000421234 DCAF8L2P0C7V8 631 aa26.56■■□□□ 1.84
LINC00475-204ENST00000421234 MYO15BQ96JP2 1530 aa26.37■■□□□ 1.81
LINC00475-204ENST00000421234 ZCCHC6Q5VYS8 1495 aaKnown RBP26.34■■□□□ 1.81
LINC00475-204ENST00000421234 UNC13AQ9UPW8 1703 aa26.22■■□□□ 1.79
LINC00475-204ENST00000421234 DCAF1Q9Y4B6 1507 aa26.19■■□□□ 1.78
LINC00475-204ENST00000421234 PABPN1Q86U42 306 aaKnown RBP eCLIP25.96■■□□□ 1.75
LINC00475-204ENST00000421234 BICRAQ9NZM4 1560 aa25.9■■□□□ 1.74
LINC00475-204ENST00000421234 SCRIBQ14160 1630 aa25.84■■□□□ 1.73
LINC00475-204ENST00000421234 DNAJC5BQ9UF47 199 aa25.66■■□□□ 1.7
LINC00475-204ENST00000421234 SHROOM4Q9ULL8 1493 aa25.63■■□□□ 1.69
LINC00475-204ENST00000421234 EIF4G1Q04637 1599 aaKnown RBP25.27■■□□□ 1.64
LINC00475-204ENST00000421234 CC2D2AQ9P2K1 1620 aa25.23■■□□□ 1.63
LINC00475-204ENST00000421234 CECR2Q9BXF3 1484 aa25.06■■□□□ 1.6
LINC00475-204ENST00000421234 MAPK8IP2Q13387 824 aaPredicted RBP24.76■■□□□ 1.55
LINC00475-204ENST00000421234 DMRT2Q9Y5R5 561 aa24.74■■□□□ 1.55
LINC00475-204ENST00000421234 SMARCA4P51532 1647 aa24.67■■□□□ 1.54
LINC00475-204ENST00000421234 BAZ1AQ9NRL2 1556 aaPredicted RBP24.6■■□□□ 1.53
LINC00475-204ENST00000421234 SMARCA2P51531 1590 aa24.54■■□□□ 1.52
LINC00475-204ENST00000421234 NCAPD3P42695 1498 aa24.52■■□□□ 1.52
LINC00475-204ENST00000421234 ATAD2BQ9ULI0 1458 aa24.52■■□□□ 1.52
LINC00475-204ENST00000421234 SCAF1Q9H7N4 1312 aaKnown RBP24.47■■□□□ 1.51
LINC00475-204ENST00000421234 HMGXB3Q12766 1538 aa24.45■■□□□ 1.51
LINC00475-204ENST00000421234 MROH2BQ7Z745 1585 aa24.4■■□□□ 1.5
LINC00475-204ENST00000421234 PEG3Q9GZU2 1588 aa24.39■■□□□ 1.5
LINC00475-204ENST00000421234 BAZ1BQ9UIG0 1483 aaKnown RBP24.37■■□□□ 1.49
LINC00475-204ENST00000421234 CACNB1Q02641 598 aaPredicted RBP24.25■■□□□ 1.47
LINC00475-204ENST00000421234 WIZO95785 1651 aa24.18■■□□□ 1.46
LINC00475-204ENST00000421234 ERCC6Q03468 1493 aa24.09■■□□□ 1.45
LINC00475-204ENST00000421234 NESP48681 1621 aa24.04■■□□□ 1.44
LINC00475-204ENST00000421234 RSF1Q96T23 1441 aaPredicted RBP24.01■■□□□ 1.43
LINC00475-204ENST00000421234 LAMC3Q9Y6N6 1575 aa23.99■■□□□ 1.43
LINC00475-204ENST00000421234 TOP2AP11388 1531 aaKnown RBP23.89■■□□□ 1.42
LINC00475-204ENST00000421234 CUX2O14529 1486 aa23.87■■□□□ 1.41
LINC00475-204ENST00000421234 KIF21AQ7Z4S6 1674 aa23.85■■□□□ 1.41
LINC00475-204ENST00000421234 DCAF8L1A6NGE4 600 aa23.82■■□□□ 1.4
LINC00475-204ENST00000421234 PDS5BQ9NTI5 1447 aa23.81■■□□□ 1.4
LINC00475-204ENST00000421234 CADPSQ9ULU8 1353 aa23.8■■□□□ 1.4
LINC00475-204ENST00000421234 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
LINC00475-204ENST00000421234 CFTRP13569 1480 aa23.62■■□□□ 1.37
LINC00475-204ENST00000421234 PRDM2Q13029 1718 aa23.61■■□□□ 1.37
LINC00475-204ENST00000421234 CEP164Q9UPV0 1460 aa23.6■■□□□ 1.37
LINC00475-204ENST00000421234 MRC2Q9UBG0 1479 aa23.59■■□□□ 1.37
LINC00475-204ENST00000421234 FANCD2Q9BXW9 1451 aa23.58■■□□□ 1.37
LINC00475-204ENST00000421234 RNF39Q9H2S5 420 aa23.57■■□□□ 1.36
LINC00475-204ENST00000421234 CCDC88BA6NC98 1476 aa23.56■■□□□ 1.36
LINC00475-204ENST00000421234 HOXD11P31277 338 aaPredicted RBP23.54■■□□□ 1.36
LINC00475-204ENST00000421234 WDR62O43379 1518 aa23.52■■□□□ 1.36
LINC00475-204ENST00000421234 PPP4R3CPQ6ZMV5 832 aa23.49■■□□□ 1.35
LINC00475-204ENST00000421234 URB2Q14146 1524 aaKnown RBP23.34■■□□□ 1.33
LINC00475-204ENST00000421234 DNAJC5Q9H3Z4 198 aa23.31■■□□□ 1.32
LINC00475-204ENST00000421234 SUPT5HO00267 1087 aaKnown RBP23.28■■□□□ 1.32
LINC00475-204ENST00000421234 CNKSR2Q8WXI2 1034 aa23.22■■□□□ 1.31
LINC00475-204ENST00000421234 C1QBPQ07021 282 aaKnown RBP23.19■■□□□ 1.3
LINC00475-204ENST00000421234 RNF216Q9NWF9 866 aaPredicted RBP23.18■■□□□ 1.3
LINC00475-204ENST00000421234 TOPBP1Q92547 1522 aa23.18■■□□□ 1.3
LINC00475-204ENST00000421234 ABCC8Q09428 1581 aa23.17■■□□□ 1.3
LINC00475-204ENST00000421234 DNMBPQ6XZF7 1577 aa23.16■■□□□ 1.3
LINC00475-204ENST00000421234 IFT140Q96RY7 1462 aa23.09■■□□□ 1.29
LINC00475-204ENST00000421234 ZNF608Q9ULD9 1512 aaPredicted RBP22.98■■□□□ 1.27
LINC00475-204ENST00000421234 EIF4G3O43432 1585 aaKnown RBP22.96■■□□□ 1.27
LINC00475-204ENST00000421234 POLA1P09884 1462 aaPredicted RBP22.95■■□□□ 1.26
LINC00475-204ENST00000421234 TARBP1Q13395 1621 aaKnown RBP22.95■■□□□ 1.26
LINC00475-204ENST00000421234 CUX1P39880 1505 aa22.91■■□□□ 1.26
LINC00475-204ENST00000421234 FGD5Q6ZNL6 1462 aa22.88■■□□□ 1.25
LINC00475-204ENST00000421234 RAD54L2Q9Y4B4 1467 aa22.85■■□□□ 1.25
LINC00475-204ENST00000421234 SOGA1O94964 1423 aa22.84■■□□□ 1.25
LINC00475-204ENST00000421234 AQRO60306 1485 aaKnown RBP eCLIP22.81■■□□□ 1.24
LINC00475-204ENST00000421234 OSCARQ8IYS5 282 aa22.8■■□□□ 1.24
LINC00475-204ENST00000421234 WDR97A6NE52 1622 aa22.79■■□□□ 1.24
LINC00475-204ENST00000421234 CHD1O14646 1710 aa22.75■■□□□ 1.23
LINC00475-204ENST00000421234 TDRD9Q8NDG6 1382 aaKnown RBP22.73■■□□□ 1.23
LINC00475-204ENST00000421234 BIVM-ERCC5R4GMW8 1640 aa22.71■■□□□ 1.23
LINC00475-204ENST00000421234 TOP2BQ02880 1626 aa22.69■■□□□ 1.22
LINC00475-204ENST00000421234 WRNQ14191 1432 aaPredicted RBP eCLIP22.69■■□□□ 1.22
LINC00475-204ENST00000421234 PBRM1Q86U86 1689 aa22.68■■□□□ 1.22
LINC00475-204ENST00000421234 SYNJ1O43426 1573 aa22.67■■□□□ 1.22
LINC00475-204ENST00000421234 ABCA10Q8WWZ4 1543 aa22.64■■□□□ 1.21
LINC00475-204ENST00000421234 SNAPC4Q5SXM2 1469 aa22.64■■□□□ 1.21
LINC00475-204ENST00000421234 GRIN2BQ13224 1484 aa22.63■■□□□ 1.21
LINC00475-204ENST00000421234 FBLN2P98095 1184 aa22.62■■□□□ 1.21
LINC00475-204ENST00000421234 ABCA5Q8WWZ7 1642 aa22.6■■□□□ 1.21
LINC00475-204ENST00000421234 GAPVD1Q14C86 1478 aa22.6■■□□□ 1.21
LINC00475-204ENST00000421234 MAGI1Q96QZ7 1491 aaPredicted RBP22.6■■□□□ 1.21
LINC00475-204ENST00000421234 RIMBP3CA6NJZ7 1639 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms