RNA–Protein interactions for RNA: ENST00000420774.1

AC004540.1-205, humanhuman

TSL 2

Gene AC004540.1, Length 496 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-205ENST00000420774 NISCHQ9Y2I1 1504 aa30.54■■■□□ 2.48
AC004540.1-205ENST00000420774 CCDC180Q9P1Z9 1646 aa27.08■■□□□ 1.93
AC004540.1-205ENST00000420774 ABCC9O60706 1549 aa26.33■■□□□ 1.81
AC004540.1-205ENST00000420774 ZCCHC6Q5VYS8 1495 aaKnown RBP25.5■■□□□ 1.67
AC004540.1-205ENST00000420774 DCAF8L2P0C7V8 631 aa25.44■■□□□ 1.66
AC004540.1-205ENST00000420774 NACADO15069 1562 aa25.36■■□□□ 1.65
AC004540.1-205ENST00000420774 RB1CC1Q8TDY2 1594 aa25.36■■□□□ 1.65
AC004540.1-205ENST00000420774 MYO15BQ96JP2 1530 aa25.23■■□□□ 1.63
AC004540.1-205ENST00000420774 DCAF1Q9Y4B6 1507 aa25.23■■□□□ 1.63
AC004540.1-205ENST00000420774 UNC13AQ9UPW8 1703 aa24.95■■□□□ 1.58
AC004540.1-205ENST00000420774 SCRIBQ14160 1630 aa24.8■■□□□ 1.56
AC004540.1-205ENST00000420774 AEBP2Q6ZN18 517 aaPredicted RBP24.75■■□□□ 1.55
AC004540.1-205ENST00000420774 BICRAQ9NZM4 1560 aa24.66■■□□□ 1.54
AC004540.1-205ENST00000420774 PABPN1Q86U42 306 aaKnown RBP eCLIP24.62■■□□□ 1.53
AC004540.1-205ENST00000420774 SHROOM4Q9ULL8 1493 aa24.34■■□□□ 1.49
AC004540.1-205ENST00000420774 EIF4G1Q04637 1599 aaKnown RBP23.96■■□□□ 1.43
AC004540.1-205ENST00000420774 DNAJC5BQ9UF47 199 aa23.96■■□□□ 1.43
AC004540.1-205ENST00000420774 CC2D2AQ9P2K1 1620 aa23.84■■□□□ 1.41
AC004540.1-205ENST00000420774 CECR2Q9BXF3 1484 aa23.82■■□□□ 1.4
AC004540.1-205ENST00000420774 SMARCA4P51532 1647 aa23.7■■□□□ 1.39
AC004540.1-205ENST00000420774 BAZ1AQ9NRL2 1556 aaPredicted RBP23.65■■□□□ 1.38
AC004540.1-205ENST00000420774 MROH2BQ7Z745 1585 aa23.59■■□□□ 1.37
AC004540.1-205ENST00000420774 CHIC1Q5VXU3 224 aa23.51■■□□□ 1.35
AC004540.1-205ENST00000420774 ATAD2BQ9ULI0 1458 aa23.47■■□□□ 1.35
AC004540.1-205ENST00000420774 SMARCA2P51531 1590 aa23.44■■□□□ 1.34
AC004540.1-205ENST00000420774 PEG3Q9GZU2 1588 aa23.42■■□□□ 1.34
AC004540.1-205ENST00000420774 WIZO95785 1651 aa23.4■■□□□ 1.34
AC004540.1-205ENST00000420774 NCAPD3P42695 1498 aa23.38■■□□□ 1.33
AC004540.1-205ENST00000420774 RSF1Q96T23 1441 aaPredicted RBP23.35■■□□□ 1.33
AC004540.1-205ENST00000420774 HMGXB3Q12766 1538 aa23.33■■□□□ 1.32
AC004540.1-205ENST00000420774 BAZ1BQ9UIG0 1483 aaKnown RBP23.3■■□□□ 1.32
AC004540.1-205ENST00000420774 TOP2AP11388 1531 aaKnown RBP23.08■■□□□ 1.29
AC004540.1-205ENST00000420774 SUPT5HO00267 1087 aaKnown RBP22.94■■□□□ 1.26
AC004540.1-205ENST00000420774 NESP48681 1621 aa22.87■■□□□ 1.25
AC004540.1-205ENST00000420774 CCDC88BA6NC98 1476 aa22.81■■□□□ 1.24
AC004540.1-205ENST00000420774 LAMC3Q9Y6N6 1575 aa22.77■■□□□ 1.24
AC004540.1-205ENST00000420774 CADPSQ9ULU8 1353 aa22.72■■□□□ 1.23
AC004540.1-205ENST00000420774 KIF21AQ7Z4S6 1674 aa22.65■■□□□ 1.22
AC004540.1-205ENST00000420774 CFTRP13569 1480 aa22.65■■□□□ 1.22
AC004540.1-205ENST00000420774 ERCC6Q03468 1493 aa22.63■■□□□ 1.21
AC004540.1-205ENST00000420774 PRDM2Q13029 1718 aa22.6■■□□□ 1.21
AC004540.1-205ENST00000420774 PDS5BQ9NTI5 1447 aa22.56■■□□□ 1.2
AC004540.1-205ENST00000420774 FANCD2Q9BXW9 1451 aa22.5■■□□□ 1.19
AC004540.1-205ENST00000420774 THOC2Q8NI27 1593 aaKnown RBP22.48■■□□□ 1.19
AC004540.1-205ENST00000420774 CEP164Q9UPV0 1460 aa22.45■■□□□ 1.18
AC004540.1-205ENST00000420774 MRC2Q9UBG0 1479 aa22.36■■□□□ 1.17
AC004540.1-205ENST00000420774 WDR62O43379 1518 aa22.31■■□□□ 1.16
AC004540.1-205ENST00000420774 URB2Q14146 1524 aaKnown RBP22.3■■□□□ 1.16
AC004540.1-205ENST00000420774 CUX2O14529 1486 aa22.28■■□□□ 1.16
AC004540.1-205ENST00000420774 TOPBP1Q92547 1522 aa22.18■■□□□ 1.14
AC004540.1-205ENST00000420774 DNMBPQ6XZF7 1577 aa22.17■■□□□ 1.14
AC004540.1-205ENST00000420774 ABCC8Q09428 1581 aa22.12■■□□□ 1.13
AC004540.1-205ENST00000420774 CUX1P39880 1505 aa22.12■■□□□ 1.13
AC004540.1-205ENST00000420774 SYNJ1O43426 1573 aa22.02■■□□□ 1.12
AC004540.1-205ENST00000420774 POLA1P09884 1462 aaPredicted RBP22.01■■□□□ 1.11
AC004540.1-205ENST00000420774 WRNQ14191 1432 aaPredicted RBP eCLIP22■■□□□ 1.11
AC004540.1-205ENST00000420774 FGD5Q6ZNL6 1462 aa21.99■■□□□ 1.11
AC004540.1-205ENST00000420774 BIVM-ERCC5R4GMW8 1640 aa21.98■■□□□ 1.11
AC004540.1-205ENST00000420774 TOP2BQ02880 1626 aa21.97■■□□□ 1.11
AC004540.1-205ENST00000420774 TARBP1Q13395 1621 aaKnown RBP21.95■■□□□ 1.1
AC004540.1-205ENST00000420774 IFT140Q96RY7 1462 aa21.94■■□□□ 1.1
AC004540.1-205ENST00000420774 RAD54L2Q9Y4B4 1467 aa21.94■■□□□ 1.1
AC004540.1-205ENST00000420774 ZNF608Q9ULD9 1512 aaPredicted RBP21.9■■□□□ 1.1
AC004540.1-205ENST00000420774 SOGA1O94964 1423 aa21.88■■□□□ 1.09
AC004540.1-205ENST00000420774 WDR97A6NE52 1622 aa21.87■■□□□ 1.09
AC004540.1-205ENST00000420774 EIF4G3O43432 1585 aaKnown RBP21.84■■□□□ 1.09
AC004540.1-205ENST00000420774 AQRO60306 1485 aaKnown RBP eCLIP21.78■■□□□ 1.08
AC004540.1-205ENST00000420774 TDRD9Q8NDG6 1382 aaKnown RBP21.76■■□□□ 1.07
AC004540.1-205ENST00000420774 ABCA10Q8WWZ4 1543 aa21.75■■□□□ 1.07
AC004540.1-205ENST00000420774 ABCA5Q8WWZ7 1642 aa21.71■■□□□ 1.07
AC004540.1-205ENST00000420774 PBRM1Q86U86 1689 aa21.69■■□□□ 1.06
AC004540.1-205ENST00000420774 GAPVD1Q14C86 1478 aa21.65■■□□□ 1.06
AC004540.1-205ENST00000420774 TRIM41Q8WV44 630 aa21.6■■□□□ 1.05
AC004540.1-205ENST00000420774 GRIN2BQ13224 1484 aa21.59■■□□□ 1.05
AC004540.1-205ENST00000420774 SNAPC4Q5SXM2 1469 aa21.59■■□□□ 1.05
AC004540.1-205ENST00000420774 CHD1O14646 1710 aa21.57■■□□□ 1.04
AC004540.1-205ENST00000420774 MAGI1Q96QZ7 1491 aaPredicted RBP21.52■■□□□ 1.03
AC004540.1-205ENST00000420774 KIF27Q86VH2 1401 aa21.5■■□□□ 1.03
AC004540.1-205ENST00000420774 ERICH3Q5RHP9 1530 aa21.5■■□□□ 1.03
AC004540.1-205ENST00000420774 ADAMTS12P58397 1594 aa21.48■■□□□ 1.03
AC004540.1-205ENST00000420774 RUSC2Q8N2Y8 1516 aa21.48■■□□□ 1.03
AC004540.1-205ENST00000420774 FBLN2P98095 1184 aa21.45■■□□□ 1.02
AC004540.1-205ENST00000420774 SYNJ2O15056 1496 aa21.44■■□□□ 1.02
AC004540.1-205ENST00000420774 IGF1RP08069 1367 aa21.39■■□□□ 1.02
AC004540.1-205ENST00000420774 CHMP7Q8WUX9 453 aaPredicted RBP21.38■■□□□ 1.01
AC004540.1-205ENST00000420774 FHAD1B1AJZ9 1412 aa21.38■■□□□ 1.01
AC004540.1-205ENST00000420774 CUL7Q14999 1698 aa21.37■■□□□ 1.01
AC004540.1-205ENST00000420774 OSCARQ8IYS5 282 aa21.36■■□□□ 1.01
AC004540.1-205ENST00000420774 GRIN2AQ12879 1464 aa21.35■■□□□ 1.01
AC004540.1-205ENST00000420774 DNAJC5Q9H3Z4 198 aa21.33■■□□□ 1.01
AC004540.1-205ENST00000420774 CEP170Q5SW79 1584 aa21.28■■□□□ 1
AC004540.1-205ENST00000420774 SENP3Q9H4L4 574 aaPredicted RBP21.28■■□□□ 1
AC004540.1-205ENST00000420774 CARMIL1Q5VZK9 1371 aa21.27■■□□□ 1
AC004540.1-205ENST00000420774 CLASP1Q7Z460 1538 aa21.26■□□□□ 0.99
AC004540.1-205ENST00000420774 FAM9AQ8IZU1 332 aaPredicted RBP21.23■□□□□ 0.99
AC004540.1-205ENST00000420774 NUP160Q12769 1436 aa21.22■□□□□ 0.99
AC004540.1-205ENST00000420774 EEA1Q15075 1411 aa21.19■□□□□ 0.98
AC004540.1-205ENST00000420774 RAPGEF2Q9Y4G8 1499 aa21.18■□□□□ 0.98
AC004540.1-205ENST00000420774 PRXQ9BXM0 1461 aa21.16■□□□□ 0.98
AC004540.1-205ENST00000420774 CSRNP3Q8WYN3 585 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms