RNA–Protein interactions for RNA: ENST00000414411.3

DDB1-202, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 1,904 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-202ENST00000414411 NISCHQ9Y2I1 1504 aa23.32■■□□□ 1.32
DDB1-202ENST00000414411 AEBP2Q6ZN18 517 aaPredicted RBP21.07■□□□□ 0.96
DDB1-202ENST00000414411 CHIC1Q5VXU3 224 aa20.97■□□□□ 0.95
DDB1-202ENST00000414411 CCDC180Q9P1Z9 1646 aa20.54■□□□□ 0.88
DDB1-202ENST00000414411 ABCC9O60706 1549 aa19.75■□□□□ 0.75
DDB1-202ENST00000414411 ZCCHC6Q5VYS8 1495 aaKnown RBP19.5■□□□□ 0.71
DDB1-202ENST00000414411 DCAF1Q9Y4B6 1507 aa19.32■□□□□ 0.68
DDB1-202ENST00000414411 DCAF8L2P0C7V8 631 aa19.32■□□□□ 0.68
DDB1-202ENST00000414411 MYO15BQ96JP2 1530 aa19.28■□□□□ 0.68
DDB1-202ENST00000414411 NACADO15069 1562 aa19.24■□□□□ 0.67
DDB1-202ENST00000414411 RB1CC1Q8TDY2 1594 aa19.15■□□□□ 0.66
DDB1-202ENST00000414411 SCRIBQ14160 1630 aa18.76■□□□□ 0.59
DDB1-202ENST00000414411 UNC13AQ9UPW8 1703 aa18.75■□□□□ 0.59
DDB1-202ENST00000414411 SHROOM4Q9ULL8 1493 aa18.63■□□□□ 0.57
DDB1-202ENST00000414411 PHF23Q9BUL5 403 aaPredicted RBP18.61■□□□□ 0.57
DDB1-202ENST00000414411 BICRAQ9NZM4 1560 aa18.61■□□□□ 0.57
DDB1-202ENST00000414411 PABPN1Q86U42 306 aaKnown RBP eCLIP18.55■□□□□ 0.56
DDB1-202ENST00000414411 CECR2Q9BXF3 1484 aa18.14■□□□□ 0.5
DDB1-202ENST00000414411 EIF4G1Q04637 1599 aaKnown RBP18.06■□□□□ 0.48
DDB1-202ENST00000414411 BAZ1AQ9NRL2 1556 aaPredicted RBP18.03■□□□□ 0.48
DDB1-202ENST00000414411 SMARCA4P51532 1647 aa18■□□□□ 0.47
DDB1-202ENST00000414411 MROH2BQ7Z745 1585 aa17.99■□□□□ 0.47
DDB1-202ENST00000414411 RSF1Q96T23 1441 aaPredicted RBP17.93■□□□□ 0.46
DDB1-202ENST00000414411 CC2D2AQ9P2K1 1620 aa17.89■□□□□ 0.45
DDB1-202ENST00000414411 DNAJC5BQ9UF47 199 aa17.87■□□□□ 0.45
DDB1-202ENST00000414411 PEG3Q9GZU2 1588 aa17.84■□□□□ 0.45
DDB1-202ENST00000414411 ATAD2BQ9ULI0 1458 aa17.83■□□□□ 0.44
DDB1-202ENST00000414411 SMARCA2P51531 1590 aa17.8■□□□□ 0.44
DDB1-202ENST00000414411 WIZO95785 1651 aa17.8■□□□□ 0.44
DDB1-202ENST00000414411 NCAPD3P42695 1498 aa17.78■□□□□ 0.44
DDB1-202ENST00000414411 SUPT5HO00267 1087 aaKnown RBP17.74■□□□□ 0.43
DDB1-202ENST00000414411 HMGXB3Q12766 1538 aa17.69■□□□□ 0.42
DDB1-202ENST00000414411 BAZ1BQ9UIG0 1483 aaKnown RBP17.67■□□□□ 0.42
DDB1-202ENST00000414411 TOP2AP11388 1531 aaKnown RBP17.62■□□□□ 0.41
DDB1-202ENST00000414411 SENP3Q9H4L4 574 aaPredicted RBP17.6■□□□□ 0.41
DDB1-202ENST00000414411 CCDC88BA6NC98 1476 aa17.44■□□□□ 0.38
DDB1-202ENST00000414411 CADPSQ9ULU8 1353 aa17.28■□□□□ 0.36
DDB1-202ENST00000414411 CFTRP13569 1480 aa17.25■□□□□ 0.35
DDB1-202ENST00000414411 NESP48681 1621 aa17.22■□□□□ 0.35
DDB1-202ENST00000414411 LAMC3Q9Y6N6 1575 aa17.21■□□□□ 0.35
DDB1-202ENST00000414411 PLPPR3Q6T4P5 718 aa17.2■□□□□ 0.34
DDB1-202ENST00000414411 PRDM2Q13029 1718 aa17.1■□□□□ 0.33
DDB1-202ENST00000414411 PDS5BQ9NTI5 1447 aa17.09■□□□□ 0.33
DDB1-202ENST00000414411 FANCD2Q9BXW9 1451 aa17.05■□□□□ 0.32
DDB1-202ENST00000414411 KIF21AQ7Z4S6 1674 aa17■□□□□ 0.31
DDB1-202ENST00000414411 CEP164Q9UPV0 1460 aa16.98■□□□□ 0.31
DDB1-202ENST00000414411 ERCC6Q03468 1493 aa16.96■□□□□ 0.31
DDB1-202ENST00000414411 ABCC8Q09428 1581 aa16.9■□□□□ 0.3
DDB1-202ENST00000414411 MRC2Q9UBG0 1479 aa16.88■□□□□ 0.29
DDB1-202ENST00000414411 URB2Q14146 1524 aaKnown RBP16.87■□□□□ 0.29
DDB1-202ENST00000414411 WRNQ14191 1432 aaPredicted RBP eCLIP16.87■□□□□ 0.29
DDB1-202ENST00000414411 THOC2Q8NI27 1593 aaKnown RBP16.85■□□□□ 0.29
DDB1-202ENST00000414411 CUX1P39880 1505 aa16.85■□□□□ 0.29
DDB1-202ENST00000414411 TOPBP1Q92547 1522 aa16.83■□□□□ 0.28
DDB1-202ENST00000414411 DNMBPQ6XZF7 1577 aa16.83■□□□□ 0.28
DDB1-202ENST00000414411 WDR62O43379 1518 aa16.82■□□□□ 0.28
DDB1-202ENST00000414411 SYNJ1O43426 1573 aa16.8■□□□□ 0.28
DDB1-202ENST00000414411 TOP2BQ02880 1626 aa16.79■□□□□ 0.28
DDB1-202ENST00000414411 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
DDB1-202ENST00000414411 TRIM41Q8WV44 630 aa16.74■□□□□ 0.27
DDB1-202ENST00000414411 POLA1P09884 1462 aaPredicted RBP16.71■□□□□ 0.27
DDB1-202ENST00000414411 FGD5Q6ZNL6 1462 aa16.71■□□□□ 0.27
DDB1-202ENST00000414411 CUX2O14529 1486 aa16.69■□□□□ 0.26
DDB1-202ENST00000414411 SOGA1O94964 1423 aa16.65■□□□□ 0.26
DDB1-202ENST00000414411 RAD54L2Q9Y4B4 1467 aa16.64■□□□□ 0.25
DDB1-202ENST00000414411 TARBP1Q13395 1621 aaKnown RBP16.62■□□□□ 0.25
DDB1-202ENST00000414411 IFT140Q96RY7 1462 aa16.61■□□□□ 0.25
DDB1-202ENST00000414411 ABCA10Q8WWZ4 1543 aa16.59■□□□□ 0.25
DDB1-202ENST00000414411 WDR97A6NE52 1622 aa16.55■□□□□ 0.24
DDB1-202ENST00000414411 ZNF608Q9ULD9 1512 aaPredicted RBP16.54■□□□□ 0.24
DDB1-202ENST00000414411 TDRD9Q8NDG6 1382 aaKnown RBP16.52■□□□□ 0.24
DDB1-202ENST00000414411 AQRO60306 1485 aaKnown RBP eCLIP16.49■□□□□ 0.235e-8■■■□□ 17.4
DDB1-202ENST00000414411 KIF27Q86VH2 1401 aa16.48■□□□□ 0.23
DDB1-202ENST00000414411 RUSC2Q8N2Y8 1516 aa16.48■□□□□ 0.23
DDB1-202ENST00000414411 ABCA5Q8WWZ7 1642 aa16.47■□□□□ 0.23
DDB1-202ENST00000414411 GAPVD1Q14C86 1478 aa16.46■□□□□ 0.23
DDB1-202ENST00000414411 EIF4G3O43432 1585 aaKnown RBP16.45■□□□□ 0.22
DDB1-202ENST00000414411 IGF1RP08069 1367 aa16.42■□□□□ 0.22
DDB1-202ENST00000414411 EEA1Q15075 1411 aa16.41■□□□□ 0.22
DDB1-202ENST00000414411 FOXD1Q16676 465 aa16.4■□□□□ 0.22
DDB1-202ENST00000414411 GRIN2BQ13224 1484 aa16.4■□□□□ 0.22
DDB1-202ENST00000414411 ERICH3Q5RHP9 1530 aa16.39■□□□□ 0.21
DDB1-202ENST00000414411 CSRNP3Q8WYN3 585 aa16.37■□□□□ 0.21
DDB1-202ENST00000414411 FAM9AQ8IZU1 332 aaPredicted RBP16.37■□□□□ 0.21
DDB1-202ENST00000414411 PBRM1Q86U86 1689 aa16.37■□□□□ 0.21
DDB1-202ENST00000414411 SNAPC4Q5SXM2 1469 aa16.32■□□□□ 0.2
DDB1-202ENST00000414411 MAGI1Q96QZ7 1491 aaPredicted RBP16.32■□□□□ 0.2
DDB1-202ENST00000414411 ADRA2BP18089 450 aa16.3■□□□□ 0.2
DDB1-202ENST00000414411 CARMIL1Q5VZK9 1371 aa16.3■□□□□ 0.2
DDB1-202ENST00000414411 PRXQ9BXM0 1461 aa16.29■□□□□ 0.2
DDB1-202ENST00000414411 FHAD1B1AJZ9 1412 aa16.29■□□□□ 0.2
DDB1-202ENST00000414411 PPP6R1Q9UPN7 881 aa16.28■□□□□ 0.2
DDB1-202ENST00000414411 CUL7Q14999 1698 aa16.28■□□□□ 0.2
DDB1-202ENST00000414411 ADAMTS12P58397 1594 aa16.27■□□□□ 0.2
DDB1-202ENST00000414411 SYNJ2O15056 1496 aa16.25■□□□□ 0.19
DDB1-202ENST00000414411 RAPGEF2Q9Y4G8 1499 aa16.23■□□□□ 0.19
DDB1-202ENST00000414411 CHMP7Q8WUX9 453 aaPredicted RBP16.22■□□□□ 0.19
DDB1-202ENST00000414411 KIF21BO75037 1637 aa16.21■□□□□ 0.19
DDB1-202ENST00000414411 FBLN2P98095 1184 aa16.19■□□□□ 0.18
DDB1-202ENST00000414411 GRIN2AQ12879 1464 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 194.5 ms