RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 NISCHQ9Y2I1 1504 aa15.45■□□□□ 0.06
VPS41-204ENST00000413141 AEBP2Q6ZN18 517 aaPredicted RBP13.87□□□□□ -0.19
VPS41-204ENST00000413141 CCDC180Q9P1Z9 1646 aa13.59□□□□□ -0.23
VPS41-204ENST00000413141 CHIC1Q5VXU3 224 aa13.15□□□□□ -0.3
VPS41-204ENST00000413141 ZCCHC6Q5VYS8 1495 aaKnown RBP12.99□□□□□ -0.33
VPS41-204ENST00000413141 ABCC9O60706 1549 aa12.85□□□□□ -0.35
VPS41-204ENST00000413141 DCAF1Q9Y4B6 1507 aa12.81□□□□□ -0.36
VPS41-204ENST00000413141 MYO15BQ96JP2 1530 aa12.7□□□□□ -0.38
VPS41-204ENST00000413141 DCAF8L2P0C7V8 631 aa12.64□□□□□ -0.39
VPS41-204ENST00000413141 NACADO15069 1562 aa12.64□□□□□ -0.39
VPS41-204ENST00000413141 RB1CC1Q8TDY2 1594 aa12.56□□□□□ -0.4
VPS41-204ENST00000413141 SHROOM4Q9ULL8 1493 aa12.45□□□□□ -0.42
VPS41-204ENST00000413141 SCRIBQ14160 1630 aa12.44□□□□□ -0.42
VPS41-204ENST00000413141 UNC13AQ9UPW8 1703 aa12.31□□□□□ -0.44
VPS41-204ENST00000413141 BICRAQ9NZM4 1560 aa12.18□□□□□ -0.46
VPS41-204ENST00000413141 SENP3Q9H4L4 574 aaPredicted RBP12.05□□□□□ -0.48
VPS41-204ENST00000413141 PABPN1Q86U42 306 aaKnown RBP eCLIP12.03□□□□□ -0.48
VPS41-204ENST00000413141 CECR2Q9BXF3 1484 aa11.99□□□□□ -0.49
VPS41-204ENST00000413141 BAZ1AQ9NRL2 1556 aaPredicted RBP11.96□□□□□ -0.5
VPS41-204ENST00000413141 SMARCA4P51532 1647 aa11.93□□□□□ -0.5
VPS41-204ENST00000413141 MROH2BQ7Z745 1585 aa11.92□□□□□ -0.5
VPS41-204ENST00000413141 RSF1Q96T23 1441 aaPredicted RBP11.92□□□□□ -0.5
VPS41-204ENST00000413141 SUPT5HO00267 1087 aaKnown RBP11.88□□□□□ -0.51
VPS41-204ENST00000413141 WIZO95785 1651 aa11.83□□□□□ -0.52
VPS41-204ENST00000413141 EIF4G1Q04637 1599 aaKnown RBP11.82□□□□□ -0.52
VPS41-204ENST00000413141 PEG3Q9GZU2 1588 aa11.8□□□□□ -0.52
VPS41-204ENST00000413141 PHF23Q9BUL5 403 aaPredicted RBP11.77□□□□□ -0.53
VPS41-204ENST00000413141 SMARCA2P51531 1590 aa11.74□□□□□ -0.53
VPS41-204ENST00000413141 TOP2AP11388 1531 aaKnown RBP11.73□□□□□ -0.53
VPS41-204ENST00000413141 ATAD2BQ9ULI0 1458 aa11.72□□□□□ -0.53
VPS41-204ENST00000413141 HMGXB3Q12766 1538 aa11.66□□□□□ -0.54
VPS41-204ENST00000413141 BAZ1BQ9UIG0 1483 aaKnown RBP11.66□□□□□ -0.54
VPS41-204ENST00000413141 CC2D2AQ9P2K1 1620 aa11.66□□□□□ -0.54
VPS41-204ENST00000413141 NCAPD3P42695 1498 aa11.63□□□□□ -0.55
VPS41-204ENST00000413141 CCDC88BA6NC98 1476 aa11.56□□□□□ -0.56
VPS41-204ENST00000413141 PRDM2Q13029 1718 aa11.36□□□□□ -0.59
VPS41-204ENST00000413141 DNAJC5BQ9UF47 199 aa11.36□□□□□ -0.59
VPS41-204ENST00000413141 CFTRP13569 1480 aa11.36□□□□□ -0.59
VPS41-204ENST00000413141 CADPSQ9ULU8 1353 aa11.31□□□□□ -0.6
VPS41-204ENST00000413141 ABCC8Q09428 1581 aa11.29□□□□□ -0.6
VPS41-204ENST00000413141 LAMC3Q9Y6N6 1575 aa11.28□□□□□ -0.6
VPS41-204ENST00000413141 NESP48681 1621 aa11.26□□□□□ -0.61
VPS41-204ENST00000413141 WRNQ14191 1432 aaPredicted RBP eCLIP11.23□□□□□ -0.61
VPS41-204ENST00000413141 SYNJ1O43426 1573 aa11.22□□□□□ -0.61
VPS41-204ENST00000413141 FANCD2Q9BXW9 1451 aa11.2□□□□□ -0.62
VPS41-204ENST00000413141 BIVM-ERCC5R4GMW8 1640 aa11.2□□□□□ -0.62
VPS41-204ENST00000413141 TRIM41Q8WV44 630 aa11.19□□□□□ -0.62
VPS41-204ENST00000413141 TOP2BQ02880 1626 aa11.19□□□□□ -0.62
VPS41-204ENST00000413141 FOXD1Q16676 465 aa11.17□□□□□ -0.62
VPS41-204ENST00000413141 CUX1P39880 1505 aa11.17□□□□□ -0.62
VPS41-204ENST00000413141 KIF21AQ7Z4S6 1674 aa11.17□□□□□ -0.62
VPS41-204ENST00000413141 CEP164Q9UPV0 1460 aa11.16□□□□□ -0.62
VPS41-204ENST00000413141 PDS5BQ9NTI5 1447 aa11.16□□□□□ -0.62
VPS41-204ENST00000413141 DNMBPQ6XZF7 1577 aa11.12□□□□□ -0.63
VPS41-204ENST00000413141 URB2Q14146 1524 aaKnown RBP11.09□□□□□ -0.63
VPS41-204ENST00000413141 TOPBP1Q92547 1522 aa11.09□□□□□ -0.63
VPS41-204ENST00000413141 FGD5Q6ZNL6 1462 aa11.06□□□□□ -0.64
VPS41-204ENST00000413141 MRC2Q9UBG0 1479 aa11.06□□□□□ -0.64
VPS41-204ENST00000413141 ERCC6Q03468 1493 aa11.04□□□□□ -0.64
VPS41-204ENST00000413141 THOC2Q8NI27 1593 aaKnown RBP11.03□□□□□ -0.64
VPS41-204ENST00000413141 SOGA1O94964 1423 aa11.03□□□□□ -0.64
VPS41-204ENST00000413141 WDR62O43379 1518 aa11.03□□□□□ -0.64
VPS41-204ENST00000413141 EEA1Q15075 1411 aa11.02□□□□□ -0.64
VPS41-204ENST00000413141 POLA1P09884 1462 aaPredicted RBP11.02□□□□□ -0.65
VPS41-204ENST00000413141 WDR97A6NE52 1622 aa11□□□□□ -0.65
VPS41-204ENST00000413141 RUSC2Q8N2Y8 1516 aa10.99□□□□□ -0.65
VPS41-204ENST00000413141 POTEDQ86YR6 584 aa10.97□□□□□ -0.65
VPS41-204ENST00000413141 ABCA10Q8WWZ4 1543 aa10.96□□□□□ -0.65
VPS41-204ENST00000413141 FAM9AQ8IZU1 332 aaPredicted RBP10.96□□□□□ -0.65
VPS41-204ENST00000413141 CUX2O14529 1486 aa10.95□□□□□ -0.66
VPS41-204ENST00000413141 RAD54L2Q9Y4B4 1467 aa10.95□□□□□ -0.66
VPS41-204ENST00000413141 TARBP1Q13395 1621 aaKnown RBP10.95□□□□□ -0.66
VPS41-204ENST00000413141 KIF27Q86VH2 1401 aa10.94□□□□□ -0.66
VPS41-204ENST00000413141 KIF21BO75037 1637 aa10.92□□□□□ -0.66
VPS41-204ENST00000413141 ABCA5Q8WWZ7 1642 aa10.92□□□□□ -0.66
VPS41-204ENST00000413141 IFT140Q96RY7 1462 aa10.9□□□□□ -0.66
VPS41-204ENST00000413141 CSRNP3Q8WYN3 585 aa10.89□□□□□ -0.67
VPS41-204ENST00000413141 GOLGA3Q08378 1498 aa10.87□□□□□ -0.67
VPS41-204ENST00000413141 PRXQ9BXM0 1461 aa10.87□□□□□ -0.67
VPS41-204ENST00000413141 ERICH3Q5RHP9 1530 aa10.86□□□□□ -0.67
VPS41-204ENST00000413141 LOC105371045A0A1W2PR82 267 aa10.86□□□□□ -0.67
VPS41-204ENST00000413141 EIF4G3O43432 1585 aaKnown RBP10.85□□□□□ -0.67
VPS41-204ENST00000413141 CUL7Q14999 1698 aa10.85□□□□□ -0.67
VPS41-204ENST00000413141 PBRM1Q86U86 1689 aa10.85□□□□□ -0.67
VPS41-204ENST00000413141 GAPVD1Q14C86 1478 aa10.84□□□□□ -0.67
VPS41-204ENST00000413141 RAPGEF2Q9Y4G8 1499 aa10.83□□□□□ -0.68
VPS41-204ENST00000413141 IGF1RP08069 1367 aa10.83□□□□□ -0.68
VPS41-204ENST00000413141 TDRD9Q8NDG6 1382 aaKnown RBP10.83□□□□□ -0.68
VPS41-204ENST00000413141 ZNF608Q9ULD9 1512 aaPredicted RBP10.83□□□□□ -0.68
VPS41-204ENST00000413141 EHMT2Q96KQ7 1210 aa10.8□□□□□ -0.68
VPS41-204ENST00000413141 ADAMTS12P58397 1594 aa10.79□□□□□ -0.68
VPS41-204ENST00000413141 AQRO60306 1485 aaKnown RBP eCLIP10.79□□□□□ -0.68
VPS41-204ENST00000413141 GRIN2BQ13224 1484 aa10.79□□□□□ -0.68
VPS41-204ENST00000413141 CARMIL1Q5VZK9 1371 aa10.77□□□□□ -0.68
VPS41-204ENST00000413141 TNIKQ9UKE5 1360 aa10.77□□□□□ -0.68
VPS41-204ENST00000413141 CEP162Q5TB80 1403 aa10.74□□□□□ -0.69
VPS41-204ENST00000413141 SNAPC4Q5SXM2 1469 aa10.74□□□□□ -0.69
VPS41-204ENST00000413141 MSH5O43196 834 aa10.73□□□□□ -0.69
VPS41-204ENST00000413141 FHAD1B1AJZ9 1412 aa10.73□□□□□ -0.69
VPS41-204ENST00000413141 MAGI1Q96QZ7 1491 aaPredicted RBP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 150.8 ms