RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 NISCHQ9Y2I1 1504 aa70.18■■■■■ 8.83
USP42-202ENST00000404008 CCDC180Q9P1Z9 1646 aa62.17■■■■■ 7.54
USP42-202ENST00000404008 ABCC9O60706 1549 aa60.03■■■■■ 7.2
USP42-202ENST00000404008 ZCCHC6Q5VYS8 1495 aaKnown RBP58.63■■■■■ 6.98
USP42-202ENST00000404008 DCAF8L2P0C7V8 631 aa58.21■■■■■ 6.91
USP42-202ENST00000404008 NACADO15069 1562 aa58.21■■■■■ 6.91
USP42-202ENST00000404008 DCAF1Q9Y4B6 1507 aa58.12■■■■■ 6.89
USP42-202ENST00000404008 RB1CC1Q8TDY2 1594 aa58.11■■■■■ 6.89
USP42-202ENST00000404008 MYO15BQ96JP2 1530 aa58.1■■■■■ 6.89
USP42-202ENST00000404008 UNC13AQ9UPW8 1703 aa56.93■■■■■ 6.7
USP42-202ENST00000404008 SCRIBQ14160 1630 aa56.73■■■■■ 6.67
USP42-202ENST00000404008 BICRAQ9NZM4 1560 aa56.37■■■■■ 6.61
USP42-202ENST00000404008 PABPN1Q86U42 306 aaKnown RBP eCLIP56.16■■■■■ 6.58
USP42-202ENST00000404008 SHROOM4Q9ULL8 1493 aa55.8■■■■■ 6.52
USP42-202ENST00000404008 EIF4G1Q04637 1599 aaKnown RBP54.79■■■■■ 6.36
USP42-202ENST00000404008 CECR2Q9BXF3 1484 aa54.58■■■■■ 6.33
USP42-202ENST00000404008 DNAJC5BQ9UF47 199 aa54.41■■■■■ 6.3
USP42-202ENST00000404008 CC2D2AQ9P2K1 1620 aa54.39■■■■■ 6.3
USP42-202ENST00000404008 BAZ1AQ9NRL2 1556 aaPredicted RBP54.35■■■■■ 6.29
USP42-202ENST00000404008 SMARCA4P51532 1647 aa54.35■■■■■ 6.29
USP42-202ENST00000404008 MROH2BQ7Z745 1585 aa54.11■■■■■ 6.25
USP42-202ENST00000404008 PEG3Q9GZU2 1588 aa53.81■■■■■ 6.21
USP42-202ENST00000404008 ATAD2BQ9ULI0 1458 aa53.81■■■■■ 6.2
USP42-202ENST00000404008 SMARCA2P51531 1590 aa53.81■■■■■ 6.2
USP42-202ENST00000404008 RSF1Q96T23 1441 aaPredicted RBP53.71■■■■■ 6.19
USP42-202ENST00000404008 NCAPD3P42695 1498 aa53.67■■■■■ 6.18
USP42-202ENST00000404008 WIZO95785 1651 aa53.61■■■■■ 6.17
USP42-202ENST00000404008 HMGXB3Q12766 1538 aa53.52■■■■■ 6.16
USP42-202ENST00000404008 BAZ1BQ9UIG0 1483 aaKnown RBP53.41■■■■■ 6.14
USP42-202ENST00000404008 TOP2AP11388 1531 aaKnown RBP53.05■■■■■ 6.08
USP42-202ENST00000404008 SUPT5HO00267 1087 aaKnown RBP52.82■■■■■ 6.05
USP42-202ENST00000404008 CCDC88BA6NC98 1476 aa52.39■■■■■ 5.98
USP42-202ENST00000404008 NESP48681 1621 aa52.19■■■■■ 5.94
USP42-202ENST00000404008 LAMC3Q9Y6N6 1575 aa52.19■■■■■ 5.94
USP42-202ENST00000404008 CADPSQ9ULU8 1353 aa52.12■■■■■ 5.93
USP42-202ENST00000404008 CFTRP13569 1480 aa52■■■■■ 5.92
USP42-202ENST00000404008 PRDM2Q13029 1718 aa51.82■■■■■ 5.89
USP42-202ENST00000404008 PDS5BQ9NTI5 1447 aa51.74■■■■■ 5.87
USP42-202ENST00000404008 KIF21AQ7Z4S6 1674 aa51.68■■■■■ 5.86
USP42-202ENST00000404008 ERCC6Q03468 1493 aa51.68■■■■■ 5.86
USP42-202ENST00000404008 FANCD2Q9BXW9 1451 aa51.55■■■■■ 5.84
USP42-202ENST00000404008 CEP164Q9UPV0 1460 aa51.43■■■■■ 5.82
USP42-202ENST00000404008 THOC2Q8NI27 1593 aaKnown RBP51.31■■■■■ 5.8
USP42-202ENST00000404008 MRC2Q9UBG0 1479 aa51.2■■■■■ 5.79
USP42-202ENST00000404008 WDR62O43379 1518 aa51.05■■■■■ 5.76
USP42-202ENST00000404008 URB2Q14146 1524 aaKnown RBP51.01■■■■■ 5.76
USP42-202ENST00000404008 CUX2O14529 1486 aa50.9■■■■■ 5.74
USP42-202ENST00000404008 DNMBPQ6XZF7 1577 aa50.86■■■■■ 5.73
USP42-202ENST00000404008 ABCC8Q09428 1581 aa50.84■■■■■ 5.73
USP42-202ENST00000404008 TOPBP1Q92547 1522 aa50.83■■■■■ 5.73
USP42-202ENST00000404008 CUX1P39880 1505 aa50.73■■■■■ 5.71
USP42-202ENST00000404008 WRNQ14191 1432 aaPredicted RBP eCLIP50.62■■■■■ 5.69
USP42-202ENST00000404008 SYNJ1O43426 1573 aa50.53■■■■■ 5.68
USP42-202ENST00000404008 BIVM-ERCC5R4GMW8 1640 aa50.52■■■■■ 5.68
USP42-202ENST00000404008 TOP2BQ02880 1626 aa50.51■■■■■ 5.68
USP42-202ENST00000404008 POLA1P09884 1462 aaPredicted RBP50.44■■■■■ 5.67
USP42-202ENST00000404008 FGD5Q6ZNL6 1462 aa50.42■■■■■ 5.66
USP42-202ENST00000404008 IFT140Q96RY7 1462 aa50.3■■■■■ 5.64
USP42-202ENST00000404008 TARBP1Q13395 1621 aaKnown RBP50.27■■■■■ 5.64
USP42-202ENST00000404008 SOGA1O94964 1423 aa50.2■■■■■ 5.63
USP42-202ENST00000404008 RAD54L2Q9Y4B4 1467 aa50.19■■■■■ 5.63
USP42-202ENST00000404008 WDR97A6NE52 1622 aa50.08■■■■■ 5.61
USP42-202ENST00000404008 ZNF608Q9ULD9 1512 aaPredicted RBP50.04■■■■■ 5.6
USP42-202ENST00000404008 ABCA10Q8WWZ4 1543 aa49.97■■■■■ 5.59
USP42-202ENST00000404008 EIF4G3O43432 1585 aaKnown RBP49.93■■■■■ 5.58
USP42-202ENST00000404008 TRIM41Q8WV44 630 aa49.86■■■■■ 5.57
USP42-202ENST00000404008 TDRD9Q8NDG6 1382 aaKnown RBP49.82■■■■■ 5.57
USP42-202ENST00000404008 AQRO60306 1485 aaKnown RBP eCLIP49.82■■■■■ 5.574e-6■■■□□ 18.9
USP42-202ENST00000404008 ABCA5Q8WWZ7 1642 aa49.77■■■■■ 5.56
USP42-202ENST00000404008 CHIC1Q5VXU3 224 aa49.73■■■■■ 5.55
USP42-202ENST00000404008 GAPVD1Q14C86 1478 aa49.66■■■■■ 5.54
USP42-202ENST00000404008 PBRM1Q86U86 1689 aa49.63■■■■■ 5.54
USP42-202ENST00000404008 GRIN2BQ13224 1484 aa49.55■■■■■ 5.52
USP42-202ENST00000404008 KIF27Q86VH2 1401 aa49.5■■■■■ 5.51
USP42-202ENST00000404008 SNAPC4Q5SXM2 1469 aa49.41■■■■■ 5.5
USP42-202ENST00000404008 ERICH3Q5RHP9 1530 aa49.4■■■■■ 5.5
USP42-202ENST00000404008 MAGI1Q96QZ7 1491 aaPredicted RBP49.37■■■■■ 5.49
USP42-202ENST00000404008 RUSC2Q8N2Y8 1516 aa49.3■■■■■ 5.48
USP42-202ENST00000404008 ADAMTS12P58397 1594 aa49.23■■■■■ 5.47
USP42-202ENST00000404008 CHD1O14646 1710 aa49.2■■■■■ 5.47
USP42-202ENST00000404008 IGF1RP08069 1367 aa49.2■■■■■ 5.47
USP42-202ENST00000404008 SYNJ2O15056 1496 aa49.17■■■■■ 5.46
USP42-202ENST00000404008 CUL7Q14999 1698 aa49.13■■■■■ 5.46
USP42-202ENST00000404008 FHAD1B1AJZ9 1412 aa49.1■■■■■ 5.45
USP42-202ENST00000404008 EEA1Q15075 1411 aa49.02■■■■■ 5.44
USP42-202ENST00000404008 FBLN2P98095 1184 aa49.02■■■■■ 5.44
USP42-202ENST00000404008 CHMP7Q8WUX9 453 aaPredicted RBP49.01■■■■■ 5.44
USP42-202ENST00000404008 GRIN2AQ12879 1464 aa48.93■■■■■ 5.42
USP42-202ENST00000404008 CARMIL1Q5VZK9 1371 aa48.91■■■■■ 5.42
USP42-202ENST00000404008 OSCARQ8IYS5 282 aa48.84■■■■■ 5.41
USP42-202ENST00000404008 CSRNP3Q8WYN3 585 aa48.81■■■■■ 5.4
USP42-202ENST00000404008 FAM9AQ8IZU1 332 aaPredicted RBP48.79■■■■■ 5.4
USP42-202ENST00000404008 PRXQ9BXM0 1461 aa48.76■■■■■ 5.4
USP42-202ENST00000404008 RAPGEF2Q9Y4G8 1499 aa48.73■■■■■ 5.39
USP42-202ENST00000404008 CEP170Q5SW79 1584 aa48.7■■■■■ 5.39
USP42-202ENST00000404008 NUP160Q12769 1436 aa48.68■■■■■ 5.38
USP42-202ENST00000404008 CLASP1Q7Z460 1538 aa48.63■■■■■ 5.38
USP42-202ENST00000404008 KIF21BO75037 1637 aa48.54■■■■■ 5.36
USP42-202ENST00000404008 DNAJC5Q9H3Z4 198 aa48.43■■■■■ 5.34
USP42-202ENST00000404008 KIAA0586Q9BVV6 1533 aa48.38■■■■■ 5.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms