RNA–Protein interactions for RNA: ENST00000400353.6

LINC00649-202, long intergenic non-protein coding RNA 649, humanhuman

TSL 3

Gene LINC00649, Length 2,090 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00649-202ENST00000400353 NISCHQ9Y2I1 1504 aa23.15■■□□□ 1.3
LINC00649-202ENST00000400353 CCDC180Q9P1Z9 1646 aa20■□□□□ 0.79
LINC00649-202ENST00000400353 ZCCHC6Q5VYS8 1495 aaKnown RBP19.55■□□□□ 0.72
LINC00649-202ENST00000400353 DCAF1Q9Y4B6 1507 aa19.19■□□□□ 0.66
LINC00649-202ENST00000400353 SHROOM4Q9ULL8 1493 aa19.16■□□□□ 0.66
LINC00649-202ENST00000400353 ABCC9O60706 1549 aa18.98■□□□□ 0.63
LINC00649-202ENST00000400353 DCAF8L2P0C7V8 631 aa18.91■□□□□ 0.62
LINC00649-202ENST00000400353 MYO15BQ96JP2 1530 aa18.79■□□□□ 0.6
LINC00649-202ENST00000400353 SUPT5HO00267 1087 aaKnown RBP18.69■□□□□ 0.58
LINC00649-202ENST00000400353 NACADO15069 1562 aa18.52■□□□□ 0.56
LINC00649-202ENST00000400353 SCRIBQ14160 1630 aa18.41■□□□□ 0.54
LINC00649-202ENST00000400353 RB1CC1Q8TDY2 1594 aa18.32■□□□□ 0.52
LINC00649-202ENST00000400353 CHIC1Q5VXU3 224 aa18.16■□□□□ 0.5
LINC00649-202ENST00000400353 RSF1Q96T23 1441 aaPredicted RBP18.13■□□□□ 0.49
LINC00649-202ENST00000400353 UNC13AQ9UPW8 1703 aa17.91■□□□□ 0.46
LINC00649-202ENST00000400353 CECR2Q9BXF3 1484 aa17.91■□□□□ 0.46
LINC00649-202ENST00000400353 PABPN1Q86U42 306 aaKnown RBP eCLIP17.91■□□□□ 0.46
LINC00649-202ENST00000400353 MROH2BQ7Z745 1585 aa17.88■□□□□ 0.45
LINC00649-202ENST00000400353 BAZ1AQ9NRL2 1556 aaPredicted RBP17.86■□□□□ 0.45
LINC00649-202ENST00000400353 BICRAQ9NZM4 1560 aa17.79■□□□□ 0.44
LINC00649-202ENST00000400353 WIZO95785 1651 aa17.75■□□□□ 0.43
LINC00649-202ENST00000400353 SMARCA4P51532 1647 aa17.7■□□□□ 0.42
LINC00649-202ENST00000400353 TOP2AP11388 1531 aaKnown RBP17.63■□□□□ 0.41
LINC00649-202ENST00000400353 TRIM41Q8WV44 630 aa17.57■□□□□ 0.4
LINC00649-202ENST00000400353 EIF4G1Q04637 1599 aaKnown RBP17.51■□□□□ 0.39
LINC00649-202ENST00000400353 PEG3Q9GZU2 1588 aa17.48■□□□□ 0.39
LINC00649-202ENST00000400353 SMARCA2P51531 1590 aa17.46■□□□□ 0.39
LINC00649-202ENST00000400353 LOC105371045A0A1W2PR82 267 aa17.43■□□□□ 0.38
LINC00649-202ENST00000400353 CCDC88BA6NC98 1476 aa17.43■□□□□ 0.38
LINC00649-202ENST00000400353 ATAD2BQ9ULI0 1458 aa17.29■□□□□ 0.36
LINC00649-202ENST00000400353 PELP1Q8IZL8 1130 aaKnown RBP17.25■□□□□ 0.35
LINC00649-202ENST00000400353 BAZ1BQ9UIG0 1483 aaKnown RBP17.22■□□□□ 0.35
LINC00649-202ENST00000400353 FAM9AQ8IZU1 332 aaPredicted RBP17.21■□□□□ 0.35
LINC00649-202ENST00000400353 ABCC8Q09428 1581 aa17.19■□□□□ 0.34
LINC00649-202ENST00000400353 PCGF6Q9BYE7 350 aa17.16■□□□□ 0.34
LINC00649-202ENST00000400353 MYT1Q01538 1121 aa17.15■□□□□ 0.34
LINC00649-202ENST00000400353 EEA1Q15075 1411 aa17.14■□□□□ 0.33
LINC00649-202ENST00000400353 CC2D2AQ9P2K1 1620 aa17.11■□□□□ 0.33
LINC00649-202ENST00000400353 HRCP23327 699 aa17.11■□□□□ 0.33
LINC00649-202ENST00000400353 TRIM26Q12899 539 aaPredicted RBP17.11■□□□□ 0.33
LINC00649-202ENST00000400353 HMGXB3Q12766 1538 aa17.1■□□□□ 0.33
LINC00649-202ENST00000400353 NCAPD3P42695 1498 aa17.07■□□□□ 0.32
LINC00649-202ENST00000400353 WRNQ14191 1432 aaPredicted RBP eCLIP17.07■□□□□ 0.32
LINC00649-202ENST00000400353 DNAJC5BQ9UF47 199 aa17.03■□□□□ 0.32
LINC00649-202ENST00000400353 SOGA1O94964 1423 aa16.97■□□□□ 0.31
LINC00649-202ENST00000400353 SYNJ1O43426 1573 aa16.95■□□□□ 0.3
LINC00649-202ENST00000400353 CSRNP3Q8WYN3 585 aa16.93■□□□□ 0.3
LINC00649-202ENST00000400353 TNIKQ9UKE5 1360 aa16.92■□□□□ 0.3
LINC00649-202ENST00000400353 EHMT2Q96KQ7 1210 aa16.91■□□□□ 0.3
LINC00649-202ENST00000400353 GOLGA3Q08378 1498 aa16.89■□□□□ 0.29
LINC00649-202ENST00000400353 TOP2BQ02880 1626 aa16.88■□□□□ 0.29
LINC00649-202ENST00000400353 BIVM-ERCC5R4GMW8 1640 aa16.86■□□□□ 0.29
LINC00649-202ENST00000400353 RUSC2Q8N2Y8 1516 aa16.86■□□□□ 0.29
LINC00649-202ENST00000400353 KIF21BO75037 1637 aa16.85■□□□□ 0.29
LINC00649-202ENST00000400353 CEP162Q5TB80 1403 aa16.84■□□□□ 0.29
LINC00649-202ENST00000400353 CEP164Q9UPV0 1460 aa16.84■□□□□ 0.29
LINC00649-202ENST00000400353 CFTRP13569 1480 aa16.82■□□□□ 0.28
LINC00649-202ENST00000400353 PRDM2Q13029 1718 aa16.78■□□□□ 0.28
LINC00649-202ENST00000400353 UBTFP17480 764 aaKnown RBP16.74■□□□□ 0.27
LINC00649-202ENST00000400353 ZEB1P37275 1124 aaPredicted RBP16.74■□□□□ 0.27
LINC00649-202ENST00000400353 CUX1P39880 1505 aa16.7■□□□□ 0.26
LINC00649-202ENST00000400353 TTBK1Q5TCY1 1321 aaPredicted RBP16.67■□□□□ 0.26
LINC00649-202ENST00000400353 ERICH3Q5RHP9 1530 aa16.66■□□□□ 0.26
LINC00649-202ENST00000400353 CADPSQ9ULU8 1353 aa16.66■□□□□ 0.26
LINC00649-202ENST00000400353 CLIP1P30622 1438 aa16.61■□□□□ 0.25
LINC00649-202ENST00000400353 KIF27Q86VH2 1401 aa16.61■□□□□ 0.25
LINC00649-202ENST00000400353 RAPGEF2Q9Y4G8 1499 aa16.61■□□□□ 0.25
LINC00649-202ENST00000400353 PRXQ9BXM0 1461 aa16.6■□□□□ 0.25
LINC00649-202ENST00000400353 NESP48681 1621 aa16.58■□□□□ 0.25
LINC00649-202ENST00000400353 PPARGC1BQ86YN6 1023 aaKnown RBP16.55■□□□□ 0.24
LINC00649-202ENST00000400353 VPS8Q8N3P4 1428 aa16.54■□□□□ 0.24
LINC00649-202ENST00000400353 FANCD2Q9BXW9 1451 aa16.48■□□□□ 0.23
LINC00649-202ENST00000400353 LAMC3Q9Y6N6 1575 aa16.45■□□□□ 0.22
LINC00649-202ENST00000400353 FGD5Q6ZNL6 1462 aa16.45■□□□□ 0.22
LINC00649-202ENST00000400353 CUX2O14529 1486 aa16.44■□□□□ 0.22
LINC00649-202ENST00000400353 DNMBPQ6XZF7 1577 aa16.43■□□□□ 0.22
LINC00649-202ENST00000400353 APLP2Q06481 763 aa16.41■□□□□ 0.22
LINC00649-202ENST00000400353 PDS5BQ9NTI5 1447 aa16.38■□□□□ 0.21
LINC00649-202ENST00000400353 IGF1RP08069 1367 aa16.38■□□□□ 0.21
LINC00649-202ENST00000400353 ARAP1Q96P48 1450 aa16.38■□□□□ 0.21
LINC00649-202ENST00000400353 TOPBP1Q92547 1522 aa16.35■□□□□ 0.21
LINC00649-202ENST00000400353 CCER1Q8TC90 406 aaPredicted RBP16.34■□□□□ 0.21
LINC00649-202ENST00000400353 ABCA10Q8WWZ4 1543 aa16.34■□□□□ 0.21
LINC00649-202ENST00000400353 CARMIL1Q5VZK9 1371 aa16.32■□□□□ 0.2
LINC00649-202ENST00000400353 KIF21AQ7Z4S6 1674 aa16.3■□□□□ 0.2
LINC00649-202ENST00000400353 POLA1P09884 1462 aaPredicted RBP16.3■□□□□ 0.2
LINC00649-202ENST00000400353 ERCC6Q03468 1493 aa16.29■□□□□ 0.2
LINC00649-202ENST00000400353 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.29■□□□□ 0.2
LINC00649-202ENST00000400353 ARHGAP35Q9NRY4 1499 aa16.28■□□□□ 0.2
LINC00649-202ENST00000400353 RANGAP1P46060 587 aaPredicted RBP16.27■□□□□ 0.2
LINC00649-202ENST00000400353 CUL7Q14999 1698 aa16.26■□□□□ 0.19
LINC00649-202ENST00000400353 URB2Q14146 1524 aaKnown RBP16.23■□□□□ 0.19
LINC00649-202ENST00000400353 WDR97A6NE52 1622 aa16.23■□□□□ 0.19
LINC00649-202ENST00000400353 RAD54L2Q9Y4B4 1467 aa16.23■□□□□ 0.19
LINC00649-202ENST00000400353 MAP3K1Q13233 1512 aa16.21■□□□□ 0.19
LINC00649-202ENST00000400353 SLC24A1O60721 1099 aa16.19■□□□□ 0.18
LINC00649-202ENST00000400353 MRC2Q9UBG0 1479 aa16.18■□□□□ 0.18
LINC00649-202ENST00000400353 EFCAB5A4FU69 1503 aa16.16■□□□□ 0.18
LINC00649-202ENST00000400353 ABCA5Q8WWZ7 1642 aa16.16■□□□□ 0.18
LINC00649-202ENST00000400353 FHAD1B1AJZ9 1412 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms