RNA–Protein interactions for RNA: ENST00000399196.1

LINC00243-201, long intergenic non-protein coding RNA 243, humanhuman

TSL 2 BASIC

Gene LINC00243, Length 2,052 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00243-201ENST00000399196 NISCHQ9Y2I1 1504 aa21.19■□□□□ 0.98
LINC00243-201ENST00000399196 CCDC180Q9P1Z9 1646 aa18.61■□□□□ 0.57
LINC00243-201ENST00000399196 ABCC9O60706 1549 aa17.9■□□□□ 0.46
LINC00243-201ENST00000399196 ZCCHC6Q5VYS8 1495 aaKnown RBP17.76■□□□□ 0.43
LINC00243-201ENST00000399196 DCAF8L2P0C7V8 631 aa17.54■□□□□ 0.4
LINC00243-201ENST00000399196 DCAF1Q9Y4B6 1507 aa17.5■□□□□ 0.39
LINC00243-201ENST00000399196 NACADO15069 1562 aa17.39■□□□□ 0.37
LINC00243-201ENST00000399196 MYO15BQ96JP2 1530 aa17.39■□□□□ 0.37
LINC00243-201ENST00000399196 SHROOM4Q9ULL8 1493 aa17.34■□□□□ 0.37
LINC00243-201ENST00000399196 RB1CC1Q8TDY2 1594 aa17.32■□□□□ 0.36
LINC00243-201ENST00000399196 SCRIBQ14160 1630 aa17.11■□□□□ 0.33
LINC00243-201ENST00000399196 UNC13AQ9UPW8 1703 aa17.04■□□□□ 0.32
LINC00243-201ENST00000399196 BICRAQ9NZM4 1560 aa16.87■□□□□ 0.29
LINC00243-201ENST00000399196 PABPN1Q86U42 306 aaKnown RBP eCLIP16.81■□□□□ 0.28
LINC00243-201ENST00000399196 SUPT5HO00267 1087 aaKnown RBP16.75■□□□□ 0.27
LINC00243-201ENST00000399196 CECR2Q9BXF3 1484 aa16.52■□□□□ 0.24
LINC00243-201ENST00000399196 MROH2BQ7Z745 1585 aa16.39■□□□□ 0.21
LINC00243-201ENST00000399196 SMARCA4P51532 1647 aa16.37■□□□□ 0.21
LINC00243-201ENST00000399196 BAZ1AQ9NRL2 1556 aaPredicted RBP16.36■□□□□ 0.21
LINC00243-201ENST00000399196 EIF4G1Q04637 1599 aaKnown RBP16.36■□□□□ 0.21
LINC00243-201ENST00000399196 RSF1Q96T23 1441 aaPredicted RBP16.35■□□□□ 0.21
LINC00243-201ENST00000399196 WIZO95785 1651 aa16.24■□□□□ 0.19
LINC00243-201ENST00000399196 CC2D2AQ9P2K1 1620 aa16.2■□□□□ 0.18
LINC00243-201ENST00000399196 PEG3Q9GZU2 1588 aa16.17■□□□□ 0.18
LINC00243-201ENST00000399196 ATAD2BQ9ULI0 1458 aa16.16■□□□□ 0.18
LINC00243-201ENST00000399196 CHIC1Q5VXU3 224 aa16.14■□□□□ 0.17
LINC00243-201ENST00000399196 SMARCA2P51531 1590 aa16.12■□□□□ 0.17
LINC00243-201ENST00000399196 DNAJC5BQ9UF47 199 aa16.1■□□□□ 0.17
LINC00243-201ENST00000399196 NCAPD3P42695 1498 aa16.06■□□□□ 0.16
LINC00243-201ENST00000399196 BAZ1BQ9UIG0 1483 aaKnown RBP16.04■□□□□ 0.16
LINC00243-201ENST00000399196 TOP2AP11388 1531 aaKnown RBP16.03■□□□□ 0.16
LINC00243-201ENST00000399196 HMGXB3Q12766 1538 aa16.02■□□□□ 0.16
LINC00243-201ENST00000399196 CCDC88BA6NC98 1476 aa15.87■□□□□ 0.13
LINC00243-201ENST00000399196 SLC24A1O60721 1099 aa15.75■□□□□ 0.11
LINC00243-201ENST00000399196 TRIM41Q8WV44 630 aa15.65■□□□□ 0.1
LINC00243-201ENST00000399196 NESP48681 1621 aa15.64■□□□□ 0.09
LINC00243-201ENST00000399196 CFTRP13569 1480 aa15.63■□□□□ 0.09
LINC00243-201ENST00000399196 CADPSQ9ULU8 1353 aa15.62■□□□□ 0.09
LINC00243-201ENST00000399196 LOC105371045A0A1W2PR82 267 aa15.6■□□□□ 0.09
LINC00243-201ENST00000399196 ABCC8Q09428 1581 aa15.56■□□□□ 0.08
LINC00243-201ENST00000399196 LAMC3Q9Y6N6 1575 aa15.56■□□□□ 0.08
LINC00243-201ENST00000399196 PRDM2Q13029 1718 aa15.54■□□□□ 0.08
LINC00243-201ENST00000399196 FAM9AQ8IZU1 332 aaPredicted RBP15.48■□□□□ 0.07
LINC00243-201ENST00000399196 FANCD2Q9BXW9 1451 aa15.46■□□□□ 0.07
LINC00243-201ENST00000399196 KIF21AQ7Z4S6 1674 aa15.45■□□□□ 0.06
LINC00243-201ENST00000399196 PDS5BQ9NTI5 1447 aa15.42■□□□□ 0.06
LINC00243-201ENST00000399196 WRNQ14191 1432 aaPredicted RBP eCLIP15.41■□□□□ 0.06
LINC00243-201ENST00000399196 CEP164Q9UPV0 1460 aa15.38■□□□□ 0.05
LINC00243-201ENST00000399196 SYNJ1O43426 1573 aa15.36■□□□□ 0.05
LINC00243-201ENST00000399196 CUX1P39880 1505 aa15.35■□□□□ 0.05
LINC00243-201ENST00000399196 ERCC6Q03468 1493 aa15.33■□□□□ 0.05
LINC00243-201ENST00000399196 URB2Q14146 1524 aaKnown RBP15.32■□□□□ 0.04
LINC00243-201ENST00000399196 EHMT2Q96KQ7 1210 aa15.31■□□□□ 0.04
LINC00243-201ENST00000399196 SOGA1O94964 1423 aa15.3■□□□□ 0.04
LINC00243-201ENST00000399196 THOC2Q8NI27 1593 aaKnown RBP15.29■□□□□ 0.04
LINC00243-201ENST00000399196 TOP2BQ02880 1626 aa15.28■□□□□ 0.04
LINC00243-201ENST00000399196 BIVM-ERCC5R4GMW8 1640 aa15.28■□□□□ 0.04
LINC00243-201ENST00000399196 RUSC2Q8N2Y8 1516 aa15.28■□□□□ 0.04
LINC00243-201ENST00000399196 MRC2Q9UBG0 1479 aa15.28■□□□□ 0.04
LINC00243-201ENST00000399196 TOPBP1Q92547 1522 aa15.27■□□□□ 0.04
LINC00243-201ENST00000399196 DNMBPQ6XZF7 1577 aa15.27■□□□□ 0.04
LINC00243-201ENST00000399196 WDR62O43379 1518 aa15.23■□□□□ 0.03
LINC00243-201ENST00000399196 FGD5Q6ZNL6 1462 aa15.2■□□□□ 0.02
LINC00243-201ENST00000399196 EEA1Q15075 1411 aa15.19■□□□□ 0.02
LINC00243-201ENST00000399196 POLA1P09884 1462 aaPredicted RBP15.18■□□□□ 0.02
LINC00243-201ENST00000399196 RAD54L2Q9Y4B4 1467 aa15.14■□□□□ 0.01
LINC00243-201ENST00000399196 CSRNP3Q8WYN3 585 aa15.13■□□□□ 0.01
LINC00243-201ENST00000399196 CUX2O14529 1486 aa15.13■□□□□ 0.01
LINC00243-201ENST00000399196 TARBP1Q13395 1621 aaKnown RBP15.09■□□□□ 0.01
LINC00243-201ENST00000399196 WDR97A6NE52 1622 aa15.08■□□□□ 0
LINC00243-201ENST00000399196 ABCA10Q8WWZ4 1543 aa15.05■□□□□ -0
LINC00243-201ENST00000399196 PCGF6Q9BYE7 350 aa15.04■□□□□ -0
LINC00243-201ENST00000399196 KIF27Q86VH2 1401 aa15.03■□□□□ -0
LINC00243-201ENST00000399196 IFT140Q96RY7 1462 aa15.03■□□□□ -0
LINC00243-201ENST00000399196 ZNF608Q9ULD9 1512 aaPredicted RBP15.02□□□□□ -0.01
LINC00243-201ENST00000399196 TNIKQ9UKE5 1360 aa15.01□□□□□ -0.01
LINC00243-201ENST00000399196 GOLGA3Q08378 1498 aa15□□□□□ -0.01
LINC00243-201ENST00000399196 UBTFP17480 764 aaKnown RBP15□□□□□ -0.01
LINC00243-201ENST00000399196 KIF21BO75037 1637 aa15□□□□□ -0.01
LINC00243-201ENST00000399196 TDRD9Q8NDG6 1382 aaKnown RBP14.99□□□□□ -0.01
LINC00243-201ENST00000399196 ABCA5Q8WWZ7 1642 aa14.98□□□□□ -0.01
LINC00243-201ENST00000399196 CEP162Q5TB80 1403 aa14.98□□□□□ -0.01
LINC00243-201ENST00000399196 AQRO60306 1485 aaKnown RBP eCLIP14.96□□□□□ -0.01
LINC00243-201ENST00000399196 RAPGEF2Q9Y4G8 1499 aa14.96□□□□□ -0.02
LINC00243-201ENST00000399196 EIF4G3O43432 1585 aaKnown RBP14.95□□□□□ -0.02
LINC00243-201ENST00000399196 GAPVD1Q14C86 1478 aa14.93□□□□□ -0.02
LINC00243-201ENST00000399196 PRXQ9BXM0 1461 aa14.9□□□□□ -0.02
LINC00243-201ENST00000399196 PBRM1Q86U86 1689 aa14.9□□□□□ -0.02
LINC00243-201ENST00000399196 TRIM26Q12899 539 aaPredicted RBP14.9□□□□□ -0.02
LINC00243-201ENST00000399196 IGF1RP08069 1367 aa14.89□□□□□ -0.03
LINC00243-201ENST00000399196 PPARGC1BQ86YN6 1023 aaKnown RBP14.88□□□□□ -0.03
LINC00243-201ENST00000399196 ERICH3Q5RHP9 1530 aa14.87□□□□□ -0.03
LINC00243-201ENST00000399196 GRIN2BQ13224 1484 aa14.85□□□□□ -0.03
LINC00243-201ENST00000399196 CARMIL1Q5VZK9 1371 aa14.82□□□□□ -0.04
LINC00243-201ENST00000399196 SNAPC4Q5SXM2 1469 aa14.82□□□□□ -0.04
LINC00243-201ENST00000399196 ADAMTS12P58397 1594 aa14.8□□□□□ -0.04
LINC00243-201ENST00000399196 CUL7Q14999 1698 aa14.8□□□□□ -0.04
LINC00243-201ENST00000399196 CLIP1P30622 1438 aa14.79□□□□□ -0.04
LINC00243-201ENST00000399196 RANGAP1P46060 587 aaPredicted RBP14.78□□□□□ -0.04
LINC00243-201ENST00000399196 MAGI1Q96QZ7 1491 aaPredicted RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms