RNA–Protein interactions for RNA: ENST00000395388.6

HLA-DRA-202, Transcript of major histocompatibility complex, class II, DR alpha, humanhuman

APPRIS P1 BASIC

Gene HLA-DRA, Length 1,280 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRA-202ENST00000395388 NISCHQ9Y2I1 1504 aa29.55■■■□□ 2.32
HLA-DRA-202ENST00000395388 CCDC180Q9P1Z9 1646 aa26.09■■□□□ 1.77
HLA-DRA-202ENST00000395388 ABCC9O60706 1549 aa25.25■■□□□ 1.63
HLA-DRA-202ENST00000395388 DCAF8L2P0C7V8 631 aa24.74■■□□□ 1.55
HLA-DRA-202ENST00000395388 ZCCHC6Q5VYS8 1495 aaKnown RBP24.65■■□□□ 1.54
HLA-DRA-202ENST00000395388 NACADO15069 1562 aa24.5■■□□□ 1.51
HLA-DRA-202ENST00000395388 DCAF1Q9Y4B6 1507 aa24.45■■□□□ 1.51
HLA-DRA-202ENST00000395388 RB1CC1Q8TDY2 1594 aa24.45■■□□□ 1.5
HLA-DRA-202ENST00000395388 MYO15BQ96JP2 1530 aa24.42■■□□□ 1.5
HLA-DRA-202ENST00000395388 SCRIBQ14160 1630 aa23.85■■□□□ 1.41
HLA-DRA-202ENST00000395388 UNC13AQ9UPW8 1703 aa23.81■■□□□ 1.4
HLA-DRA-202ENST00000395388 PABPN1Q86U42 306 aaKnown RBP eCLIP23.7■■□□□ 1.38
HLA-DRA-202ENST00000395388 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
HLA-DRA-202ENST00000395388 BICRAQ9NZM4 1560 aa23.6■■□□□ 1.37
HLA-DRA-202ENST00000395388 AEBP2Q6ZN18 517 aaPredicted RBP23.31■■□□□ 1.32
HLA-DRA-202ENST00000395388 CHIC1Q5VXU3 224 aa23.12■■□□□ 1.29
HLA-DRA-202ENST00000395388 EIF4G1Q04637 1599 aaKnown RBP23■■□□□ 1.27
HLA-DRA-202ENST00000395388 CECR2Q9BXF3 1484 aa22.96■■□□□ 1.27
HLA-DRA-202ENST00000395388 BAZ1AQ9NRL2 1556 aaPredicted RBP22.9■■□□□ 1.26
HLA-DRA-202ENST00000395388 SMARCA4P51532 1647 aa22.83■■□□□ 1.25
HLA-DRA-202ENST00000395388 DNAJC5BQ9UF47 199 aa22.83■■□□□ 1.25
HLA-DRA-202ENST00000395388 CC2D2AQ9P2K1 1620 aa22.82■■□□□ 1.24
HLA-DRA-202ENST00000395388 MROH2BQ7Z745 1585 aa22.76■■□□□ 1.23
HLA-DRA-202ENST00000395388 SMARCA2P51531 1590 aa22.66■■□□□ 1.22
HLA-DRA-202ENST00000395388 ATAD2BQ9ULI0 1458 aa22.65■■□□□ 1.22
HLA-DRA-202ENST00000395388 RSF1Q96T23 1441 aaPredicted RBP22.65■■□□□ 1.22
HLA-DRA-202ENST00000395388 NCAPD3P42695 1498 aa22.59■■□□□ 1.21
HLA-DRA-202ENST00000395388 PEG3Q9GZU2 1588 aa22.59■■□□□ 1.21
HLA-DRA-202ENST00000395388 WIZO95785 1651 aa22.55■■□□□ 1.2
HLA-DRA-202ENST00000395388 BAZ1BQ9UIG0 1483 aaKnown RBP22.51■■□□□ 1.19
HLA-DRA-202ENST00000395388 HMGXB3Q12766 1538 aa22.47■■□□□ 1.19
HLA-DRA-202ENST00000395388 SUPT5HO00267 1087 aaKnown RBP22.47■■□□□ 1.19
HLA-DRA-202ENST00000395388 TOP2AP11388 1531 aaKnown RBP22.32■■□□□ 1.16
HLA-DRA-202ENST00000395388 CCDC88BA6NC98 1476 aa22.09■■□□□ 1.13
HLA-DRA-202ENST00000395388 CADPSQ9ULU8 1353 aa21.99■■□□□ 1.11
HLA-DRA-202ENST00000395388 LAMC3Q9Y6N6 1575 aa21.94■■□□□ 1.1
HLA-DRA-202ENST00000395388 NESP48681 1621 aa21.91■■□□□ 1.1
HLA-DRA-202ENST00000395388 CFTRP13569 1480 aa21.89■■□□□ 1.09
HLA-DRA-202ENST00000395388 PDS5BQ9NTI5 1447 aa21.84■■□□□ 1.09
HLA-DRA-202ENST00000395388 ERCC6Q03468 1493 aa21.78■■□□□ 1.08
HLA-DRA-202ENST00000395388 PRDM2Q13029 1718 aa21.72■■□□□ 1.07
HLA-DRA-202ENST00000395388 FANCD2Q9BXW9 1451 aa21.71■■□□□ 1.07
HLA-DRA-202ENST00000395388 CEP164Q9UPV0 1460 aa21.66■■□□□ 1.06
HLA-DRA-202ENST00000395388 KIF21AQ7Z4S6 1674 aa21.65■■□□□ 1.06
HLA-DRA-202ENST00000395388 MRC2Q9UBG0 1479 aa21.54■■□□□ 1.04
HLA-DRA-202ENST00000395388 ABCC8Q09428 1581 aa21.48■■□□□ 1.03
HLA-DRA-202ENST00000395388 THOC2Q8NI27 1593 aaKnown RBP21.46■■□□□ 1.03
HLA-DRA-202ENST00000395388 URB2Q14146 1524 aaKnown RBP21.43■■□□□ 1.02
HLA-DRA-202ENST00000395388 WDR62O43379 1518 aa21.42■■□□□ 1.02
HLA-DRA-202ENST00000395388 DNMBPQ6XZF7 1577 aa21.39■■□□□ 1.01
HLA-DRA-202ENST00000395388 TOPBP1Q92547 1522 aa21.39■■□□□ 1.01
HLA-DRA-202ENST00000395388 WRNQ14191 1432 aaPredicted RBP eCLIP21.38■■□□□ 1.01
HLA-DRA-202ENST00000395388 CUX2O14529 1486 aa21.38■■□□□ 1.01
HLA-DRA-202ENST00000395388 CUX1P39880 1505 aa21.33■■□□□ 1
HLA-DRA-202ENST00000395388 TOP2BQ02880 1626 aa21.26■□□□□ 0.99
HLA-DRA-202ENST00000395388 SYNJ1O43426 1573 aa21.24■□□□□ 0.99
HLA-DRA-202ENST00000395388 BIVM-ERCC5R4GMW8 1640 aa21.23■□□□□ 0.99
HLA-DRA-202ENST00000395388 TRIM41Q8WV44 630 aa21.23■□□□□ 0.99
HLA-DRA-202ENST00000395388 FGD5Q6ZNL6 1462 aa21.23■□□□□ 0.99
HLA-DRA-202ENST00000395388 POLA1P09884 1462 aaPredicted RBP21.21■□□□□ 0.99
HLA-DRA-202ENST00000395388 SOGA1O94964 1423 aa21.21■□□□□ 0.99
HLA-DRA-202ENST00000395388 IFT140Q96RY7 1462 aa21.2■□□□□ 0.98
HLA-DRA-202ENST00000395388 RAD54L2Q9Y4B4 1467 aa21.14■□□□□ 0.98
HLA-DRA-202ENST00000395388 TARBP1Q13395 1621 aaKnown RBP21.08■□□□□ 0.97
HLA-DRA-202ENST00000395388 ABCA10Q8WWZ4 1543 aa21.04■□□□□ 0.96
HLA-DRA-202ENST00000395388 TDRD9Q8NDG6 1382 aaKnown RBP21.03■□□□□ 0.96
HLA-DRA-202ENST00000395388 ZNF608Q9ULD9 1512 aaPredicted RBP21.02■□□□□ 0.96
HLA-DRA-202ENST00000395388 AQRO60306 1485 aaKnown RBP eCLIP20.99■□□□□ 0.95
HLA-DRA-202ENST00000395388 WDR97A6NE52 1622 aa20.98■□□□□ 0.95
HLA-DRA-202ENST00000395388 KIF27Q86VH2 1401 aa20.95■□□□□ 0.94
HLA-DRA-202ENST00000395388 GAPVD1Q14C86 1478 aa20.94■□□□□ 0.94
HLA-DRA-202ENST00000395388 EIF4G3O43432 1585 aaKnown RBP20.94■□□□□ 0.94
HLA-DRA-202ENST00000395388 GRIN2BQ13224 1484 aa20.89■□□□□ 0.94
HLA-DRA-202ENST00000395388 ABCA5Q8WWZ7 1642 aa20.88■□□□□ 0.93
HLA-DRA-202ENST00000395388 PBRM1Q86U86 1689 aa20.83■□□□□ 0.92
HLA-DRA-202ENST00000395388 ERICH3Q5RHP9 1530 aa20.81■□□□□ 0.92
HLA-DRA-202ENST00000395388 FBLN2P98095 1184 aa20.79■□□□□ 0.92
HLA-DRA-202ENST00000395388 SNAPC4Q5SXM2 1469 aa20.79■□□□□ 0.92
HLA-DRA-202ENST00000395388 EEA1Q15075 1411 aa20.78■□□□□ 0.92
HLA-DRA-202ENST00000395388 RUSC2Q8N2Y8 1516 aa20.78■□□□□ 0.92
HLA-DRA-202ENST00000395388 MAGI1Q96QZ7 1491 aaPredicted RBP20.78■□□□□ 0.92
HLA-DRA-202ENST00000395388 IGF1RP08069 1367 aa20.78■□□□□ 0.92
HLA-DRA-202ENST00000395388 FAM9AQ8IZU1 332 aaPredicted RBP20.77■□□□□ 0.92
HLA-DRA-202ENST00000395388 CHMP7Q8WUX9 453 aaPredicted RBP20.77■□□□□ 0.92
HLA-DRA-202ENST00000395388 CSRNP3Q8WYN3 585 aa20.74■□□□□ 0.91
HLA-DRA-202ENST00000395388 FHAD1B1AJZ9 1412 aa20.72■□□□□ 0.91
HLA-DRA-202ENST00000395388 SYNJ2O15056 1496 aa20.7■□□□□ 0.9
HLA-DRA-202ENST00000395388 CARMIL1Q5VZK9 1371 aa20.7■□□□□ 0.9
HLA-DRA-202ENST00000395388 CUL7Q14999 1698 aa20.68■□□□□ 0.9
HLA-DRA-202ENST00000395388 ADAMTS12P58397 1594 aa20.67■□□□□ 0.9
HLA-DRA-202ENST00000395388 OSCARQ8IYS5 282 aa20.66■□□□□ 0.9
HLA-DRA-202ENST00000395388 CHD1O14646 1710 aa20.62■□□□□ 0.89
HLA-DRA-202ENST00000395388 GRIN2AQ12879 1464 aa20.6■□□□□ 0.89
HLA-DRA-202ENST00000395388 RAPGEF2Q9Y4G8 1499 aa20.6■□□□□ 0.89
HLA-DRA-202ENST00000395388 PRXQ9BXM0 1461 aa20.56■□□□□ 0.88
HLA-DRA-202ENST00000395388 EHMT2Q96KQ7 1210 aa20.48■□□□□ 0.87
HLA-DRA-202ENST00000395388 NUP160Q12769 1436 aa20.47■□□□□ 0.87
HLA-DRA-202ENST00000395388 KIF21BO75037 1637 aa20.47■□□□□ 0.87
HLA-DRA-202ENST00000395388 UBTFP17480 764 aaKnown RBP20.45■□□□□ 0.86
HLA-DRA-202ENST00000395388 CEP170Q5SW79 1584 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms