RNA–Protein interactions for RNA: ENST00000395185.7

HERC4-203, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 4

Gene HERC4, Length 625 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-203ENST00000395185 AEBP2Q6ZN18 517 aaPredicted RBP20.71■□□□□ 0.91
HERC4-203ENST00000395185 CHIC1Q5VXU3 224 aa20.12■□□□□ 0.81
HERC4-203ENST00000395185 NISCHQ9Y2I1 1504 aa19.86■□□□□ 0.77
HERC4-203ENST00000395185 SENP3Q9H4L4 574 aaPredicted RBP17.69■□□□□ 0.42
HERC4-203ENST00000395185 PHF23Q9BUL5 403 aaPredicted RBP17.64■□□□□ 0.41
HERC4-203ENST00000395185 CCDC180Q9P1Z9 1646 aa17.52■□□□□ 0.4
HERC4-203ENST00000395185 ABCC9O60706 1549 aa17.4■□□□□ 0.38
HERC4-203ENST00000395185 DCAF8L2P0C7V8 631 aa16.94■□□□□ 0.3
HERC4-203ENST00000395185 RB1CC1Q8TDY2 1594 aa16.66■□□□□ 0.26
HERC4-203ENST00000395185 NACADO15069 1562 aa16.64■□□□□ 0.25
HERC4-203ENST00000395185 MYO15BQ96JP2 1530 aa16.52■□□□□ 0.24
HERC4-203ENST00000395185 ZCCHC6Q5VYS8 1495 aaKnown RBP16.48■□□□□ 0.23
HERC4-203ENST00000395185 DCAF1Q9Y4B6 1507 aa16.41■□□□□ 0.22
HERC4-203ENST00000395185 FOXD1Q16676 465 aa16.4■□□□□ 0.22
HERC4-203ENST00000395185 PABPN1Q86U42 306 aaKnown RBP eCLIP16.38■□□□□ 0.21
HERC4-203ENST00000395185 PLPPR3Q6T4P5 718 aa16.3■□□□□ 0.2
HERC4-203ENST00000395185 DNAJC5BQ9UF47 199 aa16.08■□□□□ 0.16
HERC4-203ENST00000395185 SCRIBQ14160 1630 aa16.05■□□□□ 0.16
HERC4-203ENST00000395185 BICRAQ9NZM4 1560 aa16.04■□□□□ 0.16
HERC4-203ENST00000395185 SHROOM4Q9ULL8 1493 aa15.98■□□□□ 0.15
HERC4-203ENST00000395185 UNC13AQ9UPW8 1703 aa15.98■□□□□ 0.15
HERC4-203ENST00000395185 EIF4G1Q04637 1599 aaKnown RBP15.7■□□□□ 0.1
HERC4-203ENST00000395185 CECR2Q9BXF3 1484 aa15.66■□□□□ 0.1
HERC4-203ENST00000395185 CC2D2AQ9P2K1 1620 aa15.64■□□□□ 0.09
HERC4-203ENST00000395185 PPP6R1Q9UPN7 881 aa15.63■□□□□ 0.09
HERC4-203ENST00000395185 ADRA2BP18089 450 aa15.62■□□□□ 0.09
HERC4-203ENST00000395185 PIAS4Q8N2W9 510 aaPredicted RBP15.43■□□□□ 0.06
HERC4-203ENST00000395185 NCAPD3P42695 1498 aa15.42■□□□□ 0.06
HERC4-203ENST00000395185 BAZ1AQ9NRL2 1556 aaPredicted RBP15.4■□□□□ 0.06
HERC4-203ENST00000395185 ATAD2BQ9ULI0 1458 aa15.4■□□□□ 0.06
HERC4-203ENST00000395185 SMARCA2P51531 1590 aa15.35■□□□□ 0.05
HERC4-203ENST00000395185 SMARCA4P51532 1647 aa15.33■□□□□ 0.04
HERC4-203ENST00000395185 MROH2BQ7Z745 1585 aa15.28■□□□□ 0.04
HERC4-203ENST00000395185 BAZ1BQ9UIG0 1483 aaKnown RBP15.27■□□□□ 0.04
HERC4-203ENST00000395185 DNAJC5Q9H3Z4 198 aa15.26■□□□□ 0.03
HERC4-203ENST00000395185 MSH5O43196 834 aa15.24■□□□□ 0.03
HERC4-203ENST00000395185 RSF1Q96T23 1441 aaPredicted RBP15.22■□□□□ 0.03
HERC4-203ENST00000395185 HMGXB3Q12766 1538 aa15.22■□□□□ 0.03
HERC4-203ENST00000395185 PEG3Q9GZU2 1588 aa15.19■□□□□ 0.02
HERC4-203ENST00000395185 SUPT5HO00267 1087 aaKnown RBP15.08■□□□□ 0
HERC4-203ENST00000395185 ERCC6Q03468 1493 aa15.07■□□□□ 0
HERC4-203ENST00000395185 CADPSQ9ULU8 1353 aa15.03■□□□□ -0
HERC4-203ENST00000395185 WIZO95785 1651 aa15.03■□□□□ -0
HERC4-203ENST00000395185 PDS5BQ9NTI5 1447 aa15□□□□□ -0.01
HERC4-203ENST00000395185 NESP48681 1621 aa14.98□□□□□ -0.01
HERC4-203ENST00000395185 TOP2AP11388 1531 aaKnown RBP14.93□□□□□ -0.02
HERC4-203ENST00000395185 LAMC3Q9Y6N6 1575 aa14.93□□□□□ -0.02
HERC4-203ENST00000395185 CUX2O14529 1486 aa14.87□□□□□ -0.03
HERC4-203ENST00000395185 CCDC88BA6NC98 1476 aa14.84□□□□□ -0.03
HERC4-203ENST00000395185 CFTRP13569 1480 aa14.84□□□□□ -0.03
HERC4-203ENST00000395185 FANCD2Q9BXW9 1451 aa14.78□□□□□ -0.04
HERC4-203ENST00000395185 CEP164Q9UPV0 1460 aa14.76□□□□□ -0.05
HERC4-203ENST00000395185 MRC2Q9UBG0 1479 aa14.74□□□□□ -0.05
HERC4-203ENST00000395185 THOC2Q8NI27 1593 aaKnown RBP14.64□□□□□ -0.07
HERC4-203ENST00000395185 KIF21AQ7Z4S6 1674 aa14.63□□□□□ -0.07
HERC4-203ENST00000395185 WDR62O43379 1518 aa14.61□□□□□ -0.07
HERC4-203ENST00000395185 ABCC8Q09428 1581 aa14.6□□□□□ -0.07
HERC4-203ENST00000395185 URB2Q14146 1524 aaKnown RBP14.56□□□□□ -0.08
HERC4-203ENST00000395185 TOPBP1Q92547 1522 aa14.49□□□□□ -0.09
HERC4-203ENST00000395185 IFT140Q96RY7 1462 aa14.48□□□□□ -0.09
HERC4-203ENST00000395185 OSCARQ8IYS5 282 aa14.45□□□□□ -0.1
HERC4-203ENST00000395185 SOGA1O94964 1423 aa14.44□□□□□ -0.1
HERC4-203ENST00000395185 DNMBPQ6XZF7 1577 aa14.43□□□□□ -0.1
HERC4-203ENST00000395185 PRDM2Q13029 1718 aa14.41□□□□□ -0.1
HERC4-203ENST00000395185 SCAF1Q9H7N4 1312 aaKnown RBP14.41□□□□□ -0.1
HERC4-203ENST00000395185 POLA1P09884 1462 aaPredicted RBP14.37□□□□□ -0.11
HERC4-203ENST00000395185 TDRD9Q8NDG6 1382 aaKnown RBP14.35□□□□□ -0.11
HERC4-203ENST00000395185 FBLN2P98095 1184 aa14.35□□□□□ -0.11
HERC4-203ENST00000395185 ZNF608Q9ULD9 1512 aaPredicted RBP14.35□□□□□ -0.11
HERC4-203ENST00000395185 AQRO60306 1485 aaKnown RBP eCLIP14.34□□□□□ -0.111e-10■□□□□ 10.5
HERC4-203ENST00000395185 RAD54L2Q9Y4B4 1467 aa14.34□□□□□ -0.11
HERC4-203ENST00000395185 CUX1P39880 1505 aa14.33□□□□□ -0.12
HERC4-203ENST00000395185 WRNQ14191 1432 aaPredicted RBP eCLIP14.32□□□□□ -0.12
HERC4-203ENST00000395185 FGD5Q6ZNL6 1462 aa14.32□□□□□ -0.12
HERC4-203ENST00000395185 PPP4R3CPQ6ZMV5 832 aa14.32□□□□□ -0.12
HERC4-203ENST00000395185 CHMP7Q8WUX9 453 aaPredicted RBP14.3□□□□□ -0.12
HERC4-203ENST00000395185 TRIM41Q8WV44 630 aa14.24□□□□□ -0.13
HERC4-203ENST00000395185 TARBP1Q13395 1621 aaKnown RBP14.23□□□□□ -0.13
HERC4-203ENST00000395185 GRIN2BQ13224 1484 aa14.22□□□□□ -0.13
HERC4-203ENST00000395185 GAPVD1Q14C86 1478 aa14.21□□□□□ -0.13
HERC4-203ENST00000395185 MAPK8IP2Q13387 824 aaPredicted RBP14.21□□□□□ -0.13
HERC4-203ENST00000395185 ABCA10Q8WWZ4 1543 aa14.2□□□□□ -0.14
HERC4-203ENST00000395185 EIF4G3O43432 1585 aaKnown RBP14.17□□□□□ -0.14
HERC4-203ENST00000395185 WDR97A6NE52 1622 aa14.17□□□□□ -0.14
HERC4-203ENST00000395185 TOP2BQ02880 1626 aa14.16□□□□□ -0.14
HERC4-203ENST00000395185 SYNJ1O43426 1573 aa14.16□□□□□ -0.14
HERC4-203ENST00000395185 SNAPC4Q5SXM2 1469 aa14.15□□□□□ -0.14
HERC4-203ENST00000395185 MAGI1Q96QZ7 1491 aaPredicted RBP14.15□□□□□ -0.14
HERC4-203ENST00000395185 POTEDQ86YR6 584 aa14.12□□□□□ -0.15
HERC4-203ENST00000395185 BIVM-ERCC5R4GMW8 1640 aa14.12□□□□□ -0.15
HERC4-203ENST00000395185 SYNJ2O15056 1496 aa14.11□□□□□ -0.15
HERC4-203ENST00000395185 KIF27Q86VH2 1401 aa14.08□□□□□ -0.15
HERC4-203ENST00000395185 CYB5RLQ6IPT4 315 aa14.07□□□□□ -0.16
HERC4-203ENST00000395185 DMRT2Q9Y5R5 561 aa14.07□□□□□ -0.16
HERC4-203ENST00000395185 FHAD1B1AJZ9 1412 aa14.07□□□□□ -0.16
HERC4-203ENST00000395185 IGF1RP08069 1367 aa14.04□□□□□ -0.16
HERC4-203ENST00000395185 ERICH3Q5RHP9 1530 aa14.02□□□□□ -0.16
HERC4-203ENST00000395185 ABCA5Q8WWZ7 1642 aa14.01□□□□□ -0.17
HERC4-203ENST00000395185 EEA1Q15075 1411 aa13.98□□□□□ -0.17
HERC4-203ENST00000395185 CNKSR2Q8WXI2 1034 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms