RNA–Protein interactions for RNA: ENST00000381118.7

ERCC8-202, Transcript of ERCC excision repair 8, CSA ubiquitin ligase complex subunit, humanhuman

TSL 2

Gene ERCC8, Length 2,236 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC8-202ENST00000381118 NISCHQ9Y2I1 1504 aa18.24■□□□□ 0.51
ERCC8-202ENST00000381118 CCDC180Q9P1Z9 1646 aa15.93■□□□□ 0.14
ERCC8-202ENST00000381118 ZCCHC6Q5VYS8 1495 aaKnown RBP15.3■□□□□ 0.04
ERCC8-202ENST00000381118 DCAF8L2P0C7V8 631 aa15.21■□□□□ 0.03
ERCC8-202ENST00000381118 ABCC9O60706 1549 aa15.2■□□□□ 0.02
ERCC8-202ENST00000381118 DCAF1Q9Y4B6 1507 aa15.01□□□□□ -0.01
ERCC8-202ENST00000381118 SHROOM4Q9ULL8 1493 aa14.95□□□□□ -0.02
ERCC8-202ENST00000381118 MYO15BQ96JP2 1530 aa14.85□□□□□ -0.03
ERCC8-202ENST00000381118 NACADO15069 1562 aa14.84□□□□□ -0.03
ERCC8-202ENST00000381118 RB1CC1Q8TDY2 1594 aa14.75□□□□□ -0.05
ERCC8-202ENST00000381118 SCRIBQ14160 1630 aa14.72□□□□□ -0.05
ERCC8-202ENST00000381118 UNC13AQ9UPW8 1703 aa14.54□□□□□ -0.08
ERCC8-202ENST00000381118 SUPT5HO00267 1087 aaKnown RBP14.34□□□□□ -0.11
ERCC8-202ENST00000381118 PABPN1Q86U42 306 aaKnown RBP eCLIP14.33□□□□□ -0.12
ERCC8-202ENST00000381118 BICRAQ9NZM4 1560 aa14.32□□□□□ -0.12
ERCC8-202ENST00000381118 CECR2Q9BXF3 1484 aa14.22□□□□□ -0.13
ERCC8-202ENST00000381118 RSF1Q96T23 1441 aaPredicted RBP14.13□□□□□ -0.15
ERCC8-202ENST00000381118 MROH2BQ7Z745 1585 aa14.12□□□□□ -0.15
ERCC8-202ENST00000381118 BAZ1AQ9NRL2 1556 aaPredicted RBP14.09□□□□□ -0.15
ERCC8-202ENST00000381118 SMARCA4P51532 1647 aa14.06□□□□□ -0.16
ERCC8-202ENST00000381118 WIZO95785 1651 aa14.04□□□□□ -0.16
ERCC8-202ENST00000381118 AEBP2Q6ZN18 517 aaPredicted RBP14□□□□□ -0.17
ERCC8-202ENST00000381118 CHIC1Q5VXU3 224 aa13.99□□□□□ -0.17
ERCC8-202ENST00000381118 EIF4G1Q04637 1599 aaKnown RBP13.91□□□□□ -0.18
ERCC8-202ENST00000381118 PEG3Q9GZU2 1588 aa13.84□□□□□ -0.19
ERCC8-202ENST00000381118 TOP2AP11388 1531 aaKnown RBP13.83□□□□□ -0.2
ERCC8-202ENST00000381118 ATAD2BQ9ULI0 1458 aa13.82□□□□□ -0.2
ERCC8-202ENST00000381118 SMARCA2P51531 1590 aa13.81□□□□□ -0.2
ERCC8-202ENST00000381118 BAZ1BQ9UIG0 1483 aaKnown RBP13.77□□□□□ -0.21
ERCC8-202ENST00000381118 CC2D2AQ9P2K1 1620 aa13.74□□□□□ -0.21
ERCC8-202ENST00000381118 CCDC88BA6NC98 1476 aa13.7□□□□□ -0.22
ERCC8-202ENST00000381118 NCAPD3P42695 1498 aa13.68□□□□□ -0.22
ERCC8-202ENST00000381118 HMGXB3Q12766 1538 aa13.67□□□□□ -0.22
ERCC8-202ENST00000381118 DNAJC5BQ9UF47 199 aa13.45□□□□□ -0.26
ERCC8-202ENST00000381118 ABCC8Q09428 1581 aa13.45□□□□□ -0.26
ERCC8-202ENST00000381118 TRIM41Q8WV44 630 aa13.44□□□□□ -0.26
ERCC8-202ENST00000381118 CFTRP13569 1480 aa13.38□□□□□ -0.27
ERCC8-202ENST00000381118 PRDM2Q13029 1718 aa13.37□□□□□ -0.27
ERCC8-202ENST00000381118 CADPSQ9ULU8 1353 aa13.35□□□□□ -0.27
ERCC8-202ENST00000381118 NESP48681 1621 aa13.33□□□□□ -0.28
ERCC8-202ENST00000381118 WRNQ14191 1432 aaPredicted RBP eCLIP13.32□□□□□ -0.28
ERCC8-202ENST00000381118 SYNJ1O43426 1573 aa13.29□□□□□ -0.28
ERCC8-202ENST00000381118 LAMC3Q9Y6N6 1575 aa13.26□□□□□ -0.29
ERCC8-202ENST00000381118 FAM9AQ8IZU1 332 aaPredicted RBP13.25□□□□□ -0.29
ERCC8-202ENST00000381118 FANCD2Q9BXW9 1451 aa13.23□□□□□ -0.29
ERCC8-202ENST00000381118 TOP2BQ02880 1626 aa13.21□□□□□ -0.29
ERCC8-202ENST00000381118 BIVM-ERCC5R4GMW8 1640 aa13.2□□□□□ -0.3
ERCC8-202ENST00000381118 CUX1P39880 1505 aa13.2□□□□□ -0.3
ERCC8-202ENST00000381118 KIF21AQ7Z4S6 1674 aa13.19□□□□□ -0.3
ERCC8-202ENST00000381118 SOGA1O94964 1423 aa13.16□□□□□ -0.3
ERCC8-202ENST00000381118 PDS5BQ9NTI5 1447 aa13.16□□□□□ -0.3
ERCC8-202ENST00000381118 CEP164Q9UPV0 1460 aa13.16□□□□□ -0.3
ERCC8-202ENST00000381118 LOC105371045A0A1W2PR82 267 aa13.15□□□□□ -0.3
ERCC8-202ENST00000381118 EHMT2Q96KQ7 1210 aa13.14□□□□□ -0.31
ERCC8-202ENST00000381118 RUSC2Q8N2Y8 1516 aa13.12□□□□□ -0.31
ERCC8-202ENST00000381118 DNMBPQ6XZF7 1577 aa13.09□□□□□ -0.31
ERCC8-202ENST00000381118 TOPBP1Q92547 1522 aa13.08□□□□□ -0.32
ERCC8-202ENST00000381118 FGD5Q6ZNL6 1462 aa13.07□□□□□ -0.32
ERCC8-202ENST00000381118 URB2Q14146 1524 aaKnown RBP13.07□□□□□ -0.32
ERCC8-202ENST00000381118 ERCC6Q03468 1493 aa13.04□□□□□ -0.32
ERCC8-202ENST00000381118 EEA1Q15075 1411 aa13.03□□□□□ -0.32
ERCC8-202ENST00000381118 POLA1P09884 1462 aaPredicted RBP13.02□□□□□ -0.33
ERCC8-202ENST00000381118 CSRNP3Q8WYN3 585 aa13.01□□□□□ -0.33
ERCC8-202ENST00000381118 MRC2Q9UBG0 1479 aa13□□□□□ -0.33
ERCC8-202ENST00000381118 RAD54L2Q9Y4B4 1467 aa13□□□□□ -0.33
ERCC8-202ENST00000381118 CUX2O14529 1486 aa12.98□□□□□ -0.33
ERCC8-202ENST00000381118 KIF27Q86VH2 1401 aa12.97□□□□□ -0.33
ERCC8-202ENST00000381118 THOC2Q8NI27 1593 aaKnown RBP12.94□□□□□ -0.34
ERCC8-202ENST00000381118 WDR62O43379 1518 aa12.93□□□□□ -0.34
ERCC8-202ENST00000381118 WDR97A6NE52 1622 aa12.93□□□□□ -0.34
ERCC8-202ENST00000381118 ABCA10Q8WWZ4 1543 aa12.92□□□□□ -0.34
ERCC8-202ENST00000381118 KIF21BO75037 1637 aa12.91□□□□□ -0.34
ERCC8-202ENST00000381118 UBTFP17480 764 aaKnown RBP12.9□□□□□ -0.34
ERCC8-202ENST00000381118 GOLGA3Q08378 1498 aa12.9□□□□□ -0.34
ERCC8-202ENST00000381118 TARBP1Q13395 1621 aaKnown RBP12.89□□□□□ -0.35
ERCC8-202ENST00000381118 RAPGEF2Q9Y4G8 1499 aa12.88□□□□□ -0.35
ERCC8-202ENST00000381118 TDRD9Q8NDG6 1382 aaKnown RBP12.87□□□□□ -0.35
ERCC8-202ENST00000381118 IGF1RP08069 1367 aa12.85□□□□□ -0.35
ERCC8-202ENST00000381118 PRXQ9BXM0 1461 aa12.85□□□□□ -0.35
ERCC8-202ENST00000381118 ABCA5Q8WWZ7 1642 aa12.85□□□□□ -0.35
ERCC8-202ENST00000381118 GAPVD1Q14C86 1478 aa12.82□□□□□ -0.36
ERCC8-202ENST00000381118 ERICH3Q5RHP9 1530 aa12.82□□□□□ -0.36
ERCC8-202ENST00000381118 TNIKQ9UKE5 1360 aa12.82□□□□□ -0.36
ERCC8-202ENST00000381118 IFT140Q96RY7 1462 aa12.81□□□□□ -0.36
ERCC8-202ENST00000381118 PBRM1Q86U86 1689 aa12.81□□□□□ -0.36
ERCC8-202ENST00000381118 AQRO60306 1485 aaKnown RBP eCLIP12.8□□□□□ -0.36
ERCC8-202ENST00000381118 ZNF608Q9ULD9 1512 aaPredicted RBP12.8□□□□□ -0.36
ERCC8-202ENST00000381118 CARMIL1Q5VZK9 1371 aa12.8□□□□□ -0.36
ERCC8-202ENST00000381118 RANGAP1P46060 587 aaPredicted RBP12.79□□□□□ -0.36
ERCC8-202ENST00000381118 CEP162Q5TB80 1403 aa12.79□□□□□ -0.36
ERCC8-202ENST00000381118 CUL7Q14999 1698 aa12.78□□□□□ -0.36
ERCC8-202ENST00000381118 EIF4G3O43432 1585 aaKnown RBP12.76□□□□□ -0.37
ERCC8-202ENST00000381118 GRIN2BQ13224 1484 aa12.72□□□□□ -0.37
ERCC8-202ENST00000381118 CLIP1P30622 1438 aa12.7□□□□□ -0.38
ERCC8-202ENST00000381118 ADAMTS12P58397 1594 aa12.69□□□□□ -0.38
ERCC8-202ENST00000381118 CTTNBP2Q8WZ74 1663 aa12.68□□□□□ -0.38
ERCC8-202ENST00000381118 SNAPC4Q5SXM2 1469 aa12.68□□□□□ -0.38
ERCC8-202ENST00000381118 FHAD1B1AJZ9 1412 aa12.66□□□□□ -0.38
ERCC8-202ENST00000381118 FBLN2P98095 1184 aa12.61□□□□□ -0.39
ERCC8-202ENST00000381118 MAGI1Q96QZ7 1491 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms