RNA–Protein interactions for RNA: ENST00000380707.8

SMN1-202, Transcript of survival of motor neuron 1, telomeric, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMN1, Length 1,536 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN1-202ENST00000380707 NISCHQ9Y2I1 1504 aa30.14■■■□□ 2.42
SMN1-202ENST00000380707 CCDC180Q9P1Z9 1646 aa26.58■■□□□ 1.85
SMN1-202ENST00000380707 ABCC9O60706 1549 aa25.76■■□□□ 1.71
SMN1-202ENST00000380707 ZCCHC6Q5VYS8 1495 aaKnown RBP25.17■■□□□ 1.62
SMN1-202ENST00000380707 DCAF8L2P0C7V8 631 aa25.11■■□□□ 1.61
SMN1-202ENST00000380707 NACADO15069 1562 aa24.93■■□□□ 1.58
SMN1-202ENST00000380707 DCAF1Q9Y4B6 1507 aa24.92■■□□□ 1.58
SMN1-202ENST00000380707 MYO15BQ96JP2 1530 aa24.89■■□□□ 1.58
SMN1-202ENST00000380707 RB1CC1Q8TDY2 1594 aa24.88■■□□□ 1.57
SMN1-202ENST00000380707 SCRIBQ14160 1630 aa24.34■■□□□ 1.49
SMN1-202ENST00000380707 UNC13AQ9UPW8 1703 aa24.33■■□□□ 1.49
SMN1-202ENST00000380707 PABPN1Q86U42 306 aaKnown RBP eCLIP24.17■■□□□ 1.46
SMN1-202ENST00000380707 BICRAQ9NZM4 1560 aa24.16■■□□□ 1.46
SMN1-202ENST00000380707 SHROOM4Q9ULL8 1493 aa24.08■■□□□ 1.45
SMN1-202ENST00000380707 CECR2Q9BXF3 1484 aa23.48■■□□□ 1.35
SMN1-202ENST00000380707 EIF4G1Q04637 1599 aaKnown RBP23.48■■□□□ 1.35
SMN1-202ENST00000380707 DNAJC5BQ9UF47 199 aa23.39■■□□□ 1.34
SMN1-202ENST00000380707 BAZ1AQ9NRL2 1556 aaPredicted RBP23.32■■□□□ 1.32
SMN1-202ENST00000380707 SMARCA4P51532 1647 aa23.3■■□□□ 1.32
SMN1-202ENST00000380707 CC2D2AQ9P2K1 1620 aa23.3■■□□□ 1.32
SMN1-202ENST00000380707 MROH2BQ7Z745 1585 aa23.26■■□□□ 1.31
SMN1-202ENST00000380707 RSF1Q96T23 1441 aaPredicted RBP23.12■■□□□ 1.29
SMN1-202ENST00000380707 ATAD2BQ9ULI0 1458 aa23.1■■□□□ 1.29
SMN1-202ENST00000380707 SMARCA2P51531 1590 aa23.06■■□□□ 1.28
SMN1-202ENST00000380707 PEG3Q9GZU2 1588 aa23.06■■□□□ 1.28
SMN1-202ENST00000380707 NCAPD3P42695 1498 aa23.03■■□□□ 1.28
SMN1-202ENST00000380707 WIZO95785 1651 aa23.01■■□□□ 1.27
SMN1-202ENST00000380707 HMGXB3Q12766 1538 aa22.93■■□□□ 1.26
SMN1-202ENST00000380707 BAZ1BQ9UIG0 1483 aaKnown RBP22.92■■□□□ 1.26
SMN1-202ENST00000380707 SUPT5HO00267 1087 aaKnown RBP22.82■■□□□ 1.24
SMN1-202ENST00000380707 AEBP2Q6ZN18 517 aaPredicted RBP22.82■■□□□ 1.24
SMN1-202ENST00000380707 TOP2AP11388 1531 aaKnown RBP22.76■■□□□ 1.23
SMN1-202ENST00000380707 CCDC88BA6NC98 1476 aa22.53■■□□□ 1.2
SMN1-202ENST00000380707 NESP48681 1621 aa22.41■■□□□ 1.18
SMN1-202ENST00000380707 CADPSQ9ULU8 1353 aa22.39■■□□□ 1.17
SMN1-202ENST00000380707 LAMC3Q9Y6N6 1575 aa22.34■■□□□ 1.17
SMN1-202ENST00000380707 CFTRP13569 1480 aa22.32■■□□□ 1.16
SMN1-202ENST00000380707 CHIC1Q5VXU3 224 aa22.26■■□□□ 1.15
SMN1-202ENST00000380707 PDS5BQ9NTI5 1447 aa22.2■■□□□ 1.14
SMN1-202ENST00000380707 ERCC6Q03468 1493 aa22.16■■□□□ 1.14
SMN1-202ENST00000380707 FANCD2Q9BXW9 1451 aa22.13■■□□□ 1.13
SMN1-202ENST00000380707 PRDM2Q13029 1718 aa22.12■■□□□ 1.13
SMN1-202ENST00000380707 KIF21AQ7Z4S6 1674 aa22.12■■□□□ 1.13
SMN1-202ENST00000380707 CEP164Q9UPV0 1460 aa22.05■■□□□ 1.12
SMN1-202ENST00000380707 THOC2Q8NI27 1593 aaKnown RBP21.95■■□□□ 1.1
SMN1-202ENST00000380707 MRC2Q9UBG0 1479 aa21.95■■□□□ 1.1
SMN1-202ENST00000380707 POTEDQ86YR6 584 aa21.93■■□□□ 1.1
SMN1-202ENST00000380707 URB2Q14146 1524 aaKnown RBP21.9■■□□□ 1.1
SMN1-202ENST00000380707 WDR62O43379 1518 aa21.86■■□□□ 1.09
SMN1-202ENST00000380707 ABCC8Q09428 1581 aa21.82■■□□□ 1.08
SMN1-202ENST00000380707 TOPBP1Q92547 1522 aa21.81■■□□□ 1.08
SMN1-202ENST00000380707 DNMBPQ6XZF7 1577 aa21.8■■□□□ 1.08
SMN1-202ENST00000380707 CUX1P39880 1505 aa21.79■■□□□ 1.08
SMN1-202ENST00000380707 WRNQ14191 1432 aaPredicted RBP eCLIP21.77■■□□□ 1.08
SMN1-202ENST00000380707 CUX2O14529 1486 aa21.77■■□□□ 1.08
SMN1-202ENST00000380707 SYNJ1O43426 1573 aa21.71■■□□□ 1.07
SMN1-202ENST00000380707 TOP2BQ02880 1626 aa21.67■■□□□ 1.06
SMN1-202ENST00000380707 POLA1P09884 1462 aaPredicted RBP21.66■■□□□ 1.06
SMN1-202ENST00000380707 FGD5Q6ZNL6 1462 aa21.65■■□□□ 1.06
SMN1-202ENST00000380707 BIVM-ERCC5R4GMW8 1640 aa21.65■■□□□ 1.06
SMN1-202ENST00000380707 SOGA1O94964 1423 aa21.58■■□□□ 1.05
SMN1-202ENST00000380707 RAD54L2Q9Y4B4 1467 aa21.58■■□□□ 1.05
SMN1-202ENST00000380707 IFT140Q96RY7 1462 aa21.57■■□□□ 1.04
SMN1-202ENST00000380707 TARBP1Q13395 1621 aaKnown RBP21.54■■□□□ 1.04
SMN1-202ENST00000380707 TRIM41Q8WV44 630 aa21.53■■□□□ 1.04
SMN1-202ENST00000380707 ZNF608Q9ULD9 1512 aaPredicted RBP21.49■■□□□ 1.03
SMN1-202ENST00000380707 ABCA10Q8WWZ4 1543 aa21.45■■□□□ 1.02
SMN1-202ENST00000380707 TDRD9Q8NDG6 1382 aaKnown RBP21.44■■□□□ 1.02
SMN1-202ENST00000380707 WDR97A6NE52 1622 aa21.42■■□□□ 1.02
SMN1-202ENST00000380707 AQRO60306 1485 aaKnown RBP eCLIP21.42■■□□□ 1.02
SMN1-202ENST00000380707 EIF4G3O43432 1585 aaKnown RBP21.38■■□□□ 1.01
SMN1-202ENST00000380707 GAPVD1Q14C86 1478 aa21.33■■□□□ 1
SMN1-202ENST00000380707 ABCA5Q8WWZ7 1642 aa21.33■■□□□ 1
SMN1-202ENST00000380707 KIF27Q86VH2 1401 aa21.27■■□□□ 1
SMN1-202ENST00000380707 GRIN2BQ13224 1484 aa21.26■□□□□ 0.99
SMN1-202ENST00000380707 RUSC2Q8N2Y8 1516 aa21.24■□□□□ 0.99
SMN1-202ENST00000380707 PBRM1Q86U86 1689 aa21.22■□□□□ 0.99
SMN1-202ENST00000380707 SNAPC4Q5SXM2 1469 aa21.2■□□□□ 0.98
SMN1-202ENST00000380707 IGF1RP08069 1367 aa21.19■□□□□ 0.98
SMN1-202ENST00000380707 ERICH3Q5RHP9 1530 aa21.19■□□□□ 0.98
SMN1-202ENST00000380707 MAGI1Q96QZ7 1491 aaPredicted RBP21.16■□□□□ 0.98
SMN1-202ENST00000380707 FBLN2P98095 1184 aa21.1■□□□□ 0.97
SMN1-202ENST00000380707 FAM9AQ8IZU1 332 aaPredicted RBP21.1■□□□□ 0.97
SMN1-202ENST00000380707 ADAMTS12P58397 1594 aa21.09■□□□□ 0.97
SMN1-202ENST00000380707 SYNJ2O15056 1496 aa21.09■□□□□ 0.97
SMN1-202ENST00000380707 FHAD1B1AJZ9 1412 aa21.08■□□□□ 0.97
SMN1-202ENST00000380707 CHMP7Q8WUX9 453 aaPredicted RBP21.08■□□□□ 0.96
SMN1-202ENST00000380707 EEA1Q15075 1411 aa21.07■□□□□ 0.96
SMN1-202ENST00000380707 CSRNP3Q8WYN3 585 aa21.05■□□□□ 0.96
SMN1-202ENST00000380707 CARMIL1Q5VZK9 1371 aa21.05■□□□□ 0.96
SMN1-202ENST00000380707 CUL7Q14999 1698 aa21.05■□□□□ 0.96
SMN1-202ENST00000380707 CHD1O14646 1710 aa21.04■□□□□ 0.96
SMN1-202ENST00000380707 GRIN2AQ12879 1464 aa20.99■□□□□ 0.95
SMN1-202ENST00000380707 OSCARQ8IYS5 282 aa20.98■□□□□ 0.95
SMN1-202ENST00000380707 PRXQ9BXM0 1461 aa20.97■□□□□ 0.95
SMN1-202ENST00000380707 RAPGEF2Q9Y4G8 1499 aa20.95■□□□□ 0.94
SMN1-202ENST00000380707 CEP170Q5SW79 1584 aa20.89■□□□□ 0.93
SMN1-202ENST00000380707 NUP160Q12769 1436 aa20.89■□□□□ 0.93
SMN1-202ENST00000380707 KIF21BO75037 1637 aa20.83■□□□□ 0.93
SMN1-202ENST00000380707 EHMT2Q96KQ7 1210 aa20.83■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms