RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 NISCHQ9Y2I1 1504 aa50.38■■■■■ 5.66
VPS16-201ENST00000380443 CCDC180Q9P1Z9 1646 aa43.82■■■■■ 4.61
VPS16-201ENST00000380443 ABCC9O60706 1549 aa42.6■■■■■ 4.41
VPS16-201ENST00000380443 ZCCHC6Q5VYS8 1495 aaKnown RBP42.47■■■■■ 4.39
VPS16-201ENST00000380443 DCAF1Q9Y4B6 1507 aa41.76■■■■■ 4.28
VPS16-201ENST00000380443 SHROOM4Q9ULL8 1493 aa41.5■■■■■ 4.23
VPS16-201ENST00000380443 DCAF8L2P0C7V8 631 aa41.27■■■■■ 4.2
VPS16-201ENST00000380443 NACADO15069 1562 aa41.16■■■■■ 4.18
VPS16-201ENST00000380443 RB1CC1Q8TDY2 1594 aa41.15■■■■■ 4.18
VPS16-201ENST00000380443 MYO15BQ96JP2 1530 aa40.99■■■■■ 4.15
VPS16-201ENST00000380443 SUPT5HO00267 1087 aaKnown RBP40.39■■■■■ 4.06
VPS16-201ENST00000380443 UNC13AQ9UPW8 1703 aa40.13■■■■■ 4.02
VPS16-201ENST00000380443 SCRIBQ14160 1630 aa40.08■■■■■ 4.01
VPS16-201ENST00000380443 PABPN1Q86U42 306 aaKnown RBP eCLIP39.84■■■■□ 3.976e-7■■■■□ 25.5
VPS16-201ENST00000380443 BICRAQ9NZM4 1560 aa39.81■■■■□ 3.96
VPS16-201ENST00000380443 RSF1Q96T23 1441 aaPredicted RBP39.38■■■■□ 3.89
VPS16-201ENST00000380443 CHIC1Q5VXU3 224 aa39.17■■■■□ 3.86
VPS16-201ENST00000380443 CECR2Q9BXF3 1484 aa39■■■■□ 3.83
VPS16-201ENST00000380443 MROH2BQ7Z745 1585 aa38.89■■■■□ 3.82
VPS16-201ENST00000380443 BAZ1AQ9NRL2 1556 aaPredicted RBP38.86■■■■□ 3.81
VPS16-201ENST00000380443 DNAJC5BQ9UF47 199 aa38.82■■■■□ 3.81
VPS16-201ENST00000380443 EIF4G1Q04637 1599 aaKnown RBP38.79■■■■□ 3.8
VPS16-201ENST00000380443 WIZO95785 1651 aa38.59■■■■□ 3.77
VPS16-201ENST00000380443 CC2D2AQ9P2K1 1620 aa38.56■■■■□ 3.76
VPS16-201ENST00000380443 SMARCA4P51532 1647 aa38.54■■■■□ 3.76
VPS16-201ENST00000380443 TOP2AP11388 1531 aaKnown RBP38.3■■■■□ 3.72
VPS16-201ENST00000380443 PEG3Q9GZU2 1588 aa38.1■■■■□ 3.69
VPS16-201ENST00000380443 TRIM41Q8WV44 630 aa38.01■■■■□ 3.68
VPS16-201ENST00000380443 SMARCA2P51531 1590 aa38.01■■■■□ 3.67
VPS16-201ENST00000380443 ATAD2BQ9ULI0 1458 aa37.99■■■■□ 3.67
VPS16-201ENST00000380443 NCAPD3P42695 1498 aa37.95■■■■□ 3.67
VPS16-201ENST00000380443 CCDC88BA6NC98 1476 aa37.9■■■■□ 3.66
VPS16-201ENST00000380443 HMGXB3Q12766 1538 aa37.8■■■■□ 3.64
VPS16-201ENST00000380443 BAZ1BQ9UIG0 1483 aaKnown RBP37.73■■■■□ 3.63
VPS16-201ENST00000380443 LOC105371045A0A1W2PR82 267 aa37.61■■■■□ 3.61
VPS16-201ENST00000380443 ABCC8Q09428 1581 aa37.27■■■■□ 3.56
VPS16-201ENST00000380443 FAM9AQ8IZU1 332 aaPredicted RBP37.22■■■■□ 3.55
VPS16-201ENST00000380443 EEA1Q15075 1411 aa37.06■■■■□ 3.52
VPS16-201ENST00000380443 WRNQ14191 1432 aaPredicted RBP eCLIP37.06■■■■□ 3.52
VPS16-201ENST00000380443 LAMC3Q9Y6N6 1575 aa36.94■■■■□ 3.5
VPS16-201ENST00000380443 NESP48681 1621 aa36.91■■■■□ 3.5
VPS16-201ENST00000380443 CADPSQ9ULU8 1353 aa36.87■■■■□ 3.49
VPS16-201ENST00000380443 SYNJ1O43426 1573 aa36.8■■■■□ 3.48
VPS16-201ENST00000380443 SOGA1O94964 1423 aa36.79■■■■□ 3.48
VPS16-201ENST00000380443 ERCC6Q03468 1493 aa36.77■■■■□ 3.48
VPS16-201ENST00000380443 PCGF6Q9BYE7 350 aa36.77■■■■□ 3.48
VPS16-201ENST00000380443 CSRNP3Q8WYN3 585 aa36.71■■■■□ 3.47
VPS16-201ENST00000380443 PDS5BQ9NTI5 1447 aa36.71■■■■□ 3.47
VPS16-201ENST00000380443 TRIM26Q12899 539 aaPredicted RBP36.69■■■■□ 3.46
VPS16-201ENST00000380443 CFTRP13569 1480 aa36.69■■■■□ 3.46
VPS16-201ENST00000380443 TOP2BQ02880 1626 aa36.66■■■■□ 3.46
VPS16-201ENST00000380443 BIVM-ERCC5R4GMW8 1640 aa36.6■■■■□ 3.45
VPS16-201ENST00000380443 TNIKQ9UKE5 1360 aa36.57■■■■□ 3.44
VPS16-201ENST00000380443 EHMT2Q96KQ7 1210 aa36.56■■■■□ 3.44
VPS16-201ENST00000380443 RUSC2Q8N2Y8 1516 aa36.55■■■■□ 3.44
VPS16-201ENST00000380443 PRDM2Q13029 1718 aa36.52■■■■□ 3.44
VPS16-201ENST00000380443 KIF21AQ7Z4S6 1674 aa36.5■■■■□ 3.43
VPS16-201ENST00000380443 GOLGA3Q08378 1498 aa36.5■■■■□ 3.43
VPS16-201ENST00000380443 KIF21BO75037 1637 aa36.44■■■■□ 3.42
VPS16-201ENST00000380443 HRCP23327 699 aa36.44■■■■□ 3.42
VPS16-201ENST00000380443 FANCD2Q9BXW9 1451 aa36.44■■■■□ 3.42
VPS16-201ENST00000380443 CEP164Q9UPV0 1460 aa36.43■■■■□ 3.42
VPS16-201ENST00000380443 CEP162Q5TB80 1403 aa36.36■■■■□ 3.41
VPS16-201ENST00000380443 THOC2Q8NI27 1593 aaKnown RBP36.33■■■■□ 3.41
VPS16-201ENST00000380443 CUX1P39880 1505 aa36.33■■■■□ 3.41
VPS16-201ENST00000380443 CUX2O14529 1486 aa36.29■■■■□ 3.4
VPS16-201ENST00000380443 MRC2Q9UBG0 1479 aa36.27■■■■□ 3.4
VPS16-201ENST00000380443 UBTFP17480 764 aaKnown RBP36.27■■■■□ 3.4
VPS16-201ENST00000380443 WDR62O43379 1518 aa36.13■■■■□ 3.37
VPS16-201ENST00000380443 KIF27Q86VH2 1401 aa36.09■■■■□ 3.37
VPS16-201ENST00000380443 ERICH3Q5RHP9 1530 aa36.08■■■■□ 3.37
VPS16-201ENST00000380443 PRXQ9BXM0 1461 aa36.02■■■■□ 3.36
VPS16-201ENST00000380443 URB2Q14146 1524 aaKnown RBP36.02■■■■□ 3.36
VPS16-201ENST00000380443 RAPGEF2Q9Y4G8 1499 aa36.02■■■■□ 3.36
VPS16-201ENST00000380443 CLIP1P30622 1438 aa35.92■■■■□ 3.34
VPS16-201ENST00000380443 TOPBP1Q92547 1522 aa35.87■■■■□ 3.33
VPS16-201ENST00000380443 DNMBPQ6XZF7 1577 aa35.86■■■■□ 3.33
VPS16-201ENST00000380443 FGD5Q6ZNL6 1462 aa35.81■■■■□ 3.32
VPS16-201ENST00000380443 ZEB1P37275 1124 aaPredicted RBP35.76■■■■□ 3.32
VPS16-201ENST00000380443 VPS8Q8N3P4 1428 aa35.74■■■■□ 3.31
VPS16-201ENST00000380443 PPARGC1BQ86YN6 1023 aaKnown RBP35.69■■■■□ 3.3
VPS16-201ENST00000380443 IGF1RP08069 1367 aa35.66■■■■□ 3.3
VPS16-201ENST00000380443 IFT140Q96RY7 1462 aa35.62■■■■□ 3.29
VPS16-201ENST00000380443 ABCA10Q8WWZ4 1543 aa35.58■■■■□ 3.29
VPS16-201ENST00000380443 POLA1P09884 1462 aaPredicted RBP35.58■■■■□ 3.29
VPS16-201ENST00000380443 CARMIL1Q5VZK9 1371 aa35.51■■■■□ 3.27
VPS16-201ENST00000380443 APLP2Q06481 763 aa35.46■■■■□ 3.27
VPS16-201ENST00000380443 TARBP1Q13395 1621 aaKnown RBP35.44■■■■□ 3.26
VPS16-201ENST00000380443 ARAP1Q96P48 1450 aa35.42■■■■□ 3.26
VPS16-201ENST00000380443 RAD54L2Q9Y4B4 1467 aa35.39■■■■□ 3.26
VPS16-201ENST00000380443 ZNF608Q9ULD9 1512 aaPredicted RBP35.37■■■■□ 3.25
VPS16-201ENST00000380443 CUL7Q14999 1698 aa35.33■■■■□ 3.25
VPS16-201ENST00000380443 WDR97A6NE52 1622 aa35.32■■■■□ 3.24
VPS16-201ENST00000380443 RANGAP1P46060 587 aaPredicted RBP35.29■■■■□ 3.24
VPS16-201ENST00000380443 ARHGAP35Q9NRY4 1499 aa35.29■■■■□ 3.24
VPS16-201ENST00000380443 EIF4G3O43432 1585 aaKnown RBP35.27■■■■□ 3.24
VPS16-201ENST00000380443 TTBK1Q5TCY1 1321 aaPredicted RBP35.23■■■■□ 3.23
VPS16-201ENST00000380443 AQRO60306 1485 aaKnown RBP eCLIP35.23■■■■□ 3.231e-9■■■■■ 26.8
VPS16-201ENST00000380443 TDRD9Q8NDG6 1382 aaKnown RBP35.2■■■■□ 3.23
VPS16-201ENST00000380443 ABCA5Q8WWZ7 1642 aa35.17■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms